TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137546.13 - phase: 0 
         (363 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209196                                                              398  e-111
TC214348 UP|Q39832 (Q39832) Ribulose-1,5-bisphosphate carboxylas...    31  1.0
TC228003 similar to UP|Q94F26 (Q94F26) Lipase-like protein, part...    30  1.3
BE331328 similar to GP|3928140|emb chlorophyll a/b binding prote...    28  5.0
TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding prot...    28  5.0
BM731818                                                               28  5.0
BI786289                                                               28  6.5
TC223584 weakly similar to UP|RB87_DROME (P48810) Heterogeneous ...    28  6.5
TC230879 similar to GB|AAT41775.1|48310209|BT014792 At2g39000 {A...    28  6.5
TC231229                                                               28  8.5
TC223069 similar to UP|Q71LW1 (Q71LW1) Lecithin cholesterol acyl...    28  8.5

>TC209196 
          Length = 1098

 Score =  398 bits (1023), Expect = e-111
 Identities = 199/293 (67%), Positives = 244/293 (82%), Gaps = 1/293 (0%)
 Frame = +1

Query: 65  GLFSNHGPLYFVATKRFFSKMGLACHIAKVHSEASVEHNAMEIKQYIEEIYWGSGKPVML 124
           GLFSNHGPLYFV+TK  FSKMGLACHIAK+HSEASVE NA E+K+YIEEIYWGS K VML
Sbjct: 7   GLFSNHGPLYFVSTKVSFSKMGLACHIAKIHSEASVEKNAKELKEYIEEIYWGSNKRVML 186

Query: 125 LGHSKGGIDAAAALSLYWSDLKGKVAGLALVQSPYGGTPIASDILREGQIGD-KETRRIL 183
           LGHSKGG+DAAAALSLYWSDLK KVAGLAL QSPYGGTPIASD+LREGQ+GD    R++ 
Sbjct: 187 LGHSKGGVDAAAALSLYWSDLKDKVAGLALAQSPYGGTPIASDLLREGQLGDYVNLRKLT 366

Query: 184 ELIICKIIKGDIRALEDLTYEKRKDFIMKHKLPLDIPLISFRSEASITPSVLATMTQIAH 243
           E++ICK+IKGD+RALEDLTYE+R++F+ +H LP ++P++SFR+EA I+P+VLAT++ +AH
Sbjct: 367 EILICKVIKGDMRALEDLTYERRREFLKEHHLPKEVPIVSFRTEAGISPAVLATLSHVAH 546

Query: 244 AELPRLILPKFGSKVSDQFVESGRQVPVMVPVSAAMAAFALHLQLRYGEKSDGVVTCRDA 303
           AELP L+ P   S          R++P+++P+ AAMAA A  LQ+RYGEKSDG+VTCRDA
Sbjct: 547 AELP-LVAPGGES----------RKLPLVMPLGAAMAACAQLLQVRYGEKSDGLVTCRDA 693

Query: 304 EVPGSVVVRPNMKLDHAWMVYSSNSKKKKSSEPDAREMCQAIFTLLVELGKTE 356
           EVPGS+VVRP  KLDHAWMVYS  S     SE DA ++C+A+ TLLVE+G+T+
Sbjct: 694 EVPGSIVVRPKRKLDHAWMVYS--SLNDDPSEGDASQVCEALLTLLVEIGQTK 846


>TC214348 UP|Q39832 (Q39832) Ribulose-1,5-bisphosphate carboxylase small
           subunit precursor (Ribulose-1,5-bisphosphate carboxylase
           small subunit rbcS1), partial (21%)
          Length = 768

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/76 (27%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
 Frame = +3

Query: 90  HIAKVHSEASVEHNAMEIKQYIEEIY-----WGSGKPVMLLGHSKGGIDAAAALSLYWSD 144
           H+A + S  ++E N+  I +Y E +          + V+L+GHS GG+  + A+ L+   
Sbjct: 405 HLASIKSRRAIELNS--ITEYFEPLMEFLLSLAEEEQVILVGHSFGGLCISVAMELF--- 569

Query: 145 LKGKVAGLALVQSPYG 160
              K+A     ++P G
Sbjct: 570 -PTKIAAAVFDKTPRG 614


>TC228003 similar to UP|Q94F26 (Q94F26) Lipase-like protein, partial (92%)
          Length = 1444

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 97  EASVEHNAMEIKQYIEEIYWGSGKPVMLLGHSKGG---IDAAAALSLYWSDLKGKVAGLA 153
           + SVE    ++   I+E+Y  S   ++L+GHS GG   +  AA  SL        +AGL 
Sbjct: 445 DLSVETMCNDVLAVIKELYSDSPPAIILVGHSMGGSIAVHVAARRSL------SALAGLV 606

Query: 154 LVQSPYGGTPIAS 166
           +V     GT +AS
Sbjct: 607 VV-DVVEGTAMAS 642


>BE331328 similar to GP|3928140|emb chlorophyll a/b binding protein {Cicer
           arietinum}, partial (52%)
          Length = 421

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
 Frame = +2

Query: 35  DGSSRFLEL-LSDIRNGKDSIPSSFVYLLIPGLFSNHGPLY 74
           D    F EL +++++NG+ ++ S FVY L+  + +  GPLY
Sbjct: 281 DNPYAFAELNVNELKNGRLAMSSMFVY-LVKAIVTEKGPLY 400


>TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding protein, partial
            (70%)
          Length = 1724

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/32 (46%), Positives = 19/32 (58%)
 Frame = -1

Query: 219  IPLISFRSEASITPSVLATMTQIAHAELPRLI 250
            IP+IS RS   +TP+ L  MT     ELP+ I
Sbjct: 1658 IPIISLRSSLVMTPTGLNKMTN*IPTELPQAI 1563


>BM731818 
          Length = 333

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/32 (46%), Positives = 19/32 (58%)
 Frame = -3

Query: 219 IPLISFRSEASITPSVLATMTQIAHAELPRLI 250
           IP+IS RS   +TP+ L  MT     ELP+ I
Sbjct: 244 IPIISLRSSLVMTPTGLNKMTN*IPTELPQAI 149


>BI786289 
          Length = 421

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = +2

Query: 32  PVHDGSSRFLELLSDIRNGKDSIPSSFVYLL 62
           P H+   + + L SD   GKD IPSS + +L
Sbjct: 302 PFHNSLDKEMSLYSDHHCGKDQIPSSTLQIL 394


>TC223584 weakly similar to UP|RB87_DROME (P48810) Heterogeneous nuclear
           ribonucleoprotein 87F (HRP36.1 protein) (P11 protein),
           partial (8%)
          Length = 432

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 4/48 (8%)
 Frame = -3

Query: 28  PGMPPVHDGSSRFL----ELLSDIRNGKDSIPSSFVYLLIPGLFSNHG 71
           PG+P +HD   R+L    ++L ++RN + S  + + YL   G  +  G
Sbjct: 322 PGLPVLHDNGIRYLTVFTKVLDELRNRRFSR*TPYEYLSGTGAVAGEG 179


>TC230879 similar to GB|AAT41775.1|48310209|BT014792 At2g39000 {Arabidopsis
           thaliana;} , partial (74%)
          Length = 832

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 64  PGLFSNHGPLYFVATKRFFS--KMGLACHIAKVHSEASVEHNAMEIKQYIEEIYWGS 118
           PG FS  G    + +K   S  K+GL+CH   +  E S  HN ++  +   +IY GS
Sbjct: 432 PGKFSEKGDS*EIDSKGRVSCQKLGLSCHCIAL*LEQSCGHNVIQRTRL--QIYHGS 596


>TC231229 
          Length = 509

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 23/96 (23%), Positives = 43/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 122 VMLLGHSKGGIDAAAALSLYWSDLKGKVAGLALVQSPYGGTPIASDILREGQIGD---KE 178
           V+L G +K    A+    +Y   ++ K A  AL+       PI  D+L    I +   K 
Sbjct: 186 VILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKR 365

Query: 179 TRRILELIICKIIKGDIRALEDLTYEKRKDFIMKHK 214
            R ++ +I+  I+ G   +L        + ++M+H+
Sbjct: 366 QRELIYIIVYDILLGQAVSL----VGDAEKYLMRHQ 461


>TC223069 similar to UP|Q71LW1 (Q71LW1) Lecithin cholesterol
           acyltransferase-like protein, partial (44%)
          Length = 659

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 107 IKQYIEEIYWGSG-KPVMLLGHSKGGIDAAAALSLYWSDLKGKVAGLALVQSPYGGTP 163
           +K  +E  +  SG + V L+ HS GGI  +  +SLY       V     +  P+ G P
Sbjct: 467 LKSKLETAHKASGGRKVNLISHSMGGIMISCFMSLYRDVFTKYVNKWICLACPFQGAP 640


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,639,149
Number of Sequences: 63676
Number of extensions: 193038
Number of successful extensions: 901
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of query: 363
length of database: 12,639,632
effective HSP length: 98
effective length of query: 265
effective length of database: 6,399,384
effective search space: 1695836760
effective search space used: 1695836760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)