BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137510.8 - phase: 0 /pseudo
(254 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210686 similar to UP|Q941C3 (Q941C3) AT4g11980/F16J13_50, part... 226 1e-59
BU550414 similar to GP|15450341|gb AT4g11980/F16J13_50 {Arabidop... 134 4e-36
TC230849 weakly similar to UP|Q94B74 (Q94B74) MutT domain protei... 33 0.16
TC222893 similar to UP|Q40543 (Q40543) Protein-serine/threonine ... 31 0.48
TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protei... 30 0.81
AW755554 30 1.4
TC214041 UP|Q9M5Z9 (Q9M5Z9) 40s ribosomal protein S23, complete 29 1.8
TC218989 weakly similar to UP|Q7XIW7 (Q7XIW7) Myosin heavy chain... 29 2.4
TC203973 28 3.1
TC204660 homologue to UP|TPIC_ARATH (Q9SKP6) Triosephosphate iso... 28 5.3
TC215013 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 28 5.3
TC225490 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 28 5.3
TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partia... 28 5.3
TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P3... 27 6.9
TC210384 weakly similar to UP|Q8VZF9 (Q8VZF9) AT5g12890/T24H18_6... 27 9.0
>TC210686 similar to UP|Q941C3 (Q941C3) AT4g11980/F16J13_50, partial (40%)
Length = 442
Score = 226 bits (575), Expect = 1e-59
Identities = 115/148 (77%), Positives = 128/148 (85%)
Frame = +2
Query: 11 ALKNLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSS 70
ALK P H+ N + KK K GFF KMS TESPSLTH+ITLP+K +EPVHI+AAPGVS+S
Sbjct: 8 ALKRFTPLHSSNWVSKKNK-GFFCKMS--TESPSLTHTITLPNKHNEPVHIVAAPGVSNS 178
Query: 71 DFWSAIDSSLFKQWLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKE 130
DFW A++SSLFKQWLHNLQTENGILA+ TMTLRQV IQGVDMFGKRIGFLKF A+I DKE
Sbjct: 179 DFWCAVESSLFKQWLHNLQTENGILADGTMTLRQVRIQGVDMFGKRIGFLKFKADIFDKE 358
Query: 131 TGNKVPGIVFARGPAVAMLILLESEGET 158
TG +PGIVFARGPAVA+LILLESEGET
Sbjct: 359 TGKMIPGIVFARGPAVAVLILLESEGET 442
>BU550414 similar to GP|15450341|gb AT4g11980/F16J13_50 {Arabidopsis
thaliana}, partial (47%)
Length = 608
Score = 134 bits (338), Expect(2) = 4e-36
Identities = 68/75 (90%), Positives = 70/75 (92%)
Frame = -1
Query: 154 SEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDL 213
SEGETYAVLTEQARVPVGR I ELPAGMLDDDKGD VGTAVREVEEETG+KLNVEDMVDL
Sbjct: 608 SEGETYAVLTEQARVPVGRNIXELPAGMLDDDKGDFVGTAVREVEEETGLKLNVEDMVDL 429
Query: 214 TAFLDSSTGSTVFPS 228
TAFLDS+TG VFPS
Sbjct: 428 TAFLDSTTGCRVFPS 384
Score = 34.3 bits (77), Expect(2) = 4e-36
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2
Query: 232 ESVLIKRSSHISKVKRLAFVNMG 254
E VLIKR SH KVKR AFVNMG
Sbjct: 343 EGVLIKR*SHNYKVKRPAFVNMG 275
>TC230849 weakly similar to UP|Q94B74 (Q94B74) MutT domain protein-like,
partial (46%)
Length = 871
Score = 32.7 bits (73), Expect = 0.16
Identities = 18/41 (43%), Positives = 27/41 (64%)
Frame = +2
Query: 171 GRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMV 211
G+ I +LP G +D+ + DI AVREV+EETGI +++
Sbjct: 95 GQGIWKLPTGGVDEGE-DICTAAVREVKEETGIDTQFVEVI 214
>TC222893 similar to UP|Q40543 (Q40543) Protein-serine/threonine kinase ,
partial (46%)
Length = 779
Score = 31.2 bits (69), Expect = 0.48
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 68 SSSDFWSAIDSSLFKQWLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEII 127
+SSDF +++DSS+ W NL+ + + Q D F G LK++ + I
Sbjct: 339 TSSDFSASLDSSIASSWSENLKRNSHFSWWNH--------QNKDRFASASGILKYLYKEI 494
Query: 128 DKETGN 133
K T N
Sbjct: 495 QKATQN 512
>TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protein-like,
partial (53%)
Length = 655
Score = 30.4 bits (67), Expect = 0.81
Identities = 23/67 (34%), Positives = 37/67 (54%)
Frame = +1
Query: 150 ILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVED 209
I+L E VL ++ G + ++P G++D + +I A+REV+EETGI +
Sbjct: 28 IVLNDNKEVLVVLEKKGGFH-GIGVWKIPTGVVDAGE-EIFEPAIREVKEETGID---TE 192
Query: 210 MVDLTAF 216
V+L AF
Sbjct: 193 FVELLAF 213
>AW755554
Length = 436
Score = 29.6 bits (65), Expect = 1.4
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +1
Query: 7 TISAALKNLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHIL 62
+ SA KNL FH+P I K +SP HS+ PS + E +H+L
Sbjct: 97 SFSALSKNLLHFHSPTQINSNKG-----------KSPR*NHSLCNPSNEFELLHLL 231
>TC214041 UP|Q9M5Z9 (Q9M5Z9) 40s ribosomal protein S23, complete
Length = 738
Score = 29.3 bits (64), Expect = 1.8
Identities = 14/43 (32%), Positives = 26/43 (59%)
Frame = -3
Query: 14 NLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQS 56
NL+P+ L+ K +K Y + +++ +++HS+TL SK S
Sbjct: 505 NLRPWFLLLLLEKSQKRDTRYLHNLKSDTRNISHSMTLSSKSS 377
>TC218989 weakly similar to UP|Q7XIW7 (Q7XIW7) Myosin heavy chain-like, partial
(27%)
Length = 1047
Score = 28.9 bits (63), Expect = 2.4
Identities = 23/81 (28%), Positives = 39/81 (47%)
Frame = -2
Query: 8 ISAALKNLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGV 67
IS +L+ H P+ + ++ + F ++S E+PS++ S L + S +H L A
Sbjct: 1007 ISFSLQKTASDHFPSQLACQRMDPLFVCLASGQETPSVSLSFFLYA--SRWLHTLPASST 834
Query: 68 SSSDFWSAIDSSLFKQWLHNL 88
S S F +L W H+L
Sbjct: 833 SCSIFVLWTVPALELAWPHHL 771
>TC203973
Length = 935
Score = 28.5 bits (62), Expect = 3.1
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 5/66 (7%)
Frame = +2
Query: 168 VPVGRIILELPAGMLDDDKGDIVGT-----AVREVEEETGIKLNVEDMVDLTAFLDSSTG 222
+P+G +L+ A D +K ++ +RE+ TG+ L+V + + FL ST
Sbjct: 161 IPLGENVLQKHAAFFDLNKDGVIYPWETFKGLREIG--TGVLLSVGGAIFINVFLSQSTR 334
Query: 223 STVFPS 228
FPS
Sbjct: 335 PGKFPS 352
>TC204660 homologue to UP|TPIC_ARATH (Q9SKP6) Triosephosphate isomerase,
chloroplast precursor (TIM) , partial (83%)
Length = 1334
Score = 27.7 bits (60), Expect = 5.3
Identities = 28/120 (23%), Positives = 47/120 (38%), Gaps = 10/120 (8%)
Frame = -1
Query: 4 TVRTISAALK-NLKPFHAPNLIPKKKKNGFFYKMSSS--------TESPSLTHSITLPSK 54
T + A+L N P HA P K F+ ++SS +E P +TH
Sbjct: 665 TSKVFPASLSCNSSPIHAITPRPSLKA*TAFFPINSSFSPITCLRSECPRITHLQPRSFS 486
Query: 55 QSEPVHILAAPGVSSSDFWSAID-SSLFKQWLHNLQTENGILANDTMTLRQVLIQGVDMF 113
S + + AP + +FW+ I S+ + + ++ T+ G T L + F
Sbjct: 485 CSTLISPVKAPPFPTQEFWAEISILSVIEFFT*SMYTKGGATTTSTSDSNVALFKSETSF 306
>TC215013 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
complete
Length = 1999
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 23 LIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQS 56
L+ ++ GFF+ SSS+ S S T SI+ S S
Sbjct: 496 LLERENPKGFFFNSSSSSSSSSSTSSISESSLNS 395
>TC225490 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
partial (64%)
Length = 865
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 23 LIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQS 56
L+ ++ GFF+ SSS+ S S T SI+ S S
Sbjct: 364 LLERENPKGFFFNSSSSSSSSSSTSSISESSLNS 263
>TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partial (25%)
Length = 660
Score = 27.7 bits (60), Expect = 5.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 21 PNLIPKKKKNGFFYKMSSSTESPSLTHSI--TLPSKQSEPVHILAAP 65
PNL+ F + SSST SP T ++ + S S+P +LA+P
Sbjct: 363 PNLLSPLLSPSFSFSFSSSTCSPPFTGNLNSSTSSPASKPPLLLASP 223
>TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P39, complete
Length = 1196
Score = 27.3 bits (59), Expect = 6.9
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -2
Query: 39 STESPSLTHSITLPSKQSEPVHILAAPGVSSSDFWSAIDSSLF 81
S+ SPSL+ S+ L S S + ++P SSSD S SS F
Sbjct: 658 SSSSPSLSSSLLLSSSISWELPDSSSPARSSSDSSSESSSSSF 530
>TC210384 weakly similar to UP|Q8VZF9 (Q8VZF9) AT5g12890/T24H18_60, partial
(11%)
Length = 860
Score = 26.9 bits (58), Expect = 9.0
Identities = 23/95 (24%), Positives = 41/95 (42%)
Frame = +2
Query: 24 IPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFWSAIDSSLFKQ 83
+P ++ N + + E+ + H LP+ SE SD WS S Q
Sbjct: 623 LPHRRVNSDEFSLPDFPEA-RVIHRTQLPNNISE---------ADGSDPWSVFQKSNLSQ 772
Query: 84 WLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIG 118
W+++ +GIL N T+ + G+ F +++G
Sbjct: 773 WVNS----DGILFN---TVEEFDSVGLGYFKRKLG 856
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,082,478
Number of Sequences: 63676
Number of extensions: 114720
Number of successful extensions: 772
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of query: 254
length of database: 12,639,632
effective HSP length: 95
effective length of query: 159
effective length of database: 6,590,412
effective search space: 1047875508
effective search space used: 1047875508
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC137510.8