BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136954.7 - phase: 0
(396 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ273711 96 2e-20
CF922015 84 1e-16
TC234828 71 7e-13
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno... 57 2e-08
TC233976 55 7e-08
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 53 2e-07
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 50 1e-06
TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L1... 50 1e-06
CO980191 46 2e-06
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot... 50 2e-06
TC227589 50 2e-06
TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen... 49 3e-06
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa... 49 4e-06
TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), ... 47 2e-05
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G... 41 0.001
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p... 37 0.016
NP595172 polyprotein [Glycine max] 35 0.045
CO984873 35 0.077
BE804023 34 0.10
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 30 1.5
>BQ273711
Length = 409
Score = 96.3 bits (238), Expect = 2e-20
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Frame = -2
Query: 1 MAGRN---DAAIAAALEAVAQAVQQQPQAGNGEVRMLETFLRNHPPAFKGRYDPDGAQSW 57
MAGR + + + AV + + Q+ E R L F +NHPP F G YDP+GA+ W
Sbjct: 363 MAGRGRDQNRDVLDRITAVLETLVQERDVEPAEYRGLMAFRKNHPPKFSGDYDPEGARLW 184
Query: 58 LKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRREFLNR 117
L E E+IF M C E KV + T ML EA++WW + P G V+ W F+ +FL
Sbjct: 183 LAETEKIFEAMGCLEEHKVLYATFMLQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLEN 4
Query: 118 Y 118
Y
Sbjct: 3 Y 1
>CF922015
Length = 172
Score = 84.0 bits (206), Expect = 1e-16
Identities = 35/54 (64%), Positives = 46/54 (84%)
Frame = -3
Query: 34 LETFLRNHPPAFKGRYDPDGAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEA 87
L+ F RN+PP FKG YDP+GA++WL+E+E+IFRVM+C + QKV F THMLA+EA
Sbjct: 164 LDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3
>TC234828
Length = 857
Score = 71.2 bits (173), Expect = 7e-13
Identities = 36/95 (37%), Positives = 53/95 (54%)
Frame = +3
Query: 297 NCNEEGHISTQCTQPKKVRVGGKVFALTGTQTANEDRLIRGTCFFNSTPLIAIIDTGATH 356
N G++S + +V +VFA++G++ A D LIRG C L + D+GATH
Sbjct: 66 NSTRSGNVSNNNISGGRPKVPSRVFAMSGSEAAASDDLIRGKCLIADKLLDVLYDSGATH 245
Query: 357 CFIALECAYKLGLIVSDMKGEMVVETPAKGSVTTS 391
FI+ C +LGL +++ +MVV TP VTTS
Sbjct: 246 SFISHACVERLGLCATELPYDMVVSTPTSEPVTTS 350
>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K24M7, partial (36%)
Length = 1224
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Frame = +1
Query: 244 PSKRDAPAEIVCFKCGEKGHKSNVC------TKDEKKCFRCGQKGHMLADC----KRGDV 293
P K + +C +C +GH++ C KD K C+ CG+ GH L C + G
Sbjct: 313 PEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHPLQEGGT 492
Query: 294 V---CYNCNEEGHISTQCTQ 310
C+ CN+ GH+S C Q
Sbjct: 493 KFAECFVCNQRGHLSKNCPQ 552
Score = 51.2 bits (121), Expect = 8e-07
Identities = 38/127 (29%), Positives = 50/127 (38%), Gaps = 27/127 (21%)
Frame = +1
Query: 223 RPKPYSAPTDKGKQRLND-------ERRPSKRDA---------PAEIVCFKCGEKGHKSN 266
+P P P K K+ N E +P R P E CF C H +
Sbjct: 130 KPTPPKDPDKKKKKNKNSAFKRKRPEPKPGSRKRHLLRVPGMKPGES-CFICKAMDHIAK 306
Query: 267 VCTKD-----EKKCFRCGQKGHMLADCK------RGDVVCYNCNEEGHISTQCTQPKKVR 315
+C + K C RC ++GH +C + CYNC E GH TQC P ++
Sbjct: 307 LCPEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHP--LQ 480
Query: 316 VGGKVFA 322
GG FA
Sbjct: 481 EGGTKFA 501
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDEKK-------CFRCGQKGHMLADC 288
CF C ++GH S C ++ C CG H+ DC
Sbjct: 505 CFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTHLAKDC 627
>TC233976
Length = 763
Score = 54.7 bits (130), Expect = 7e-08
Identities = 33/128 (25%), Positives = 54/128 (41%), Gaps = 9/128 (7%)
Frame = +1
Query: 202 EEDTKAHYKVMSERRGKGHQ----NRPKPYSAPTDK-----GKQRLNDERRPSKRDAPAE 252
+++ A YK + GK + +R KPYSAP + G++
Sbjct: 25 QQEKVAFYKNANASHGKEKKPMTHSRAKPYSAPLEYENHYGGQRTSGGHHLAGGSSQLVN 204
Query: 253 IVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPK 312
V G G + +C +CG+ GH +C +V C+N +GH+ST C P+
Sbjct: 205 RVSQPAGRGGSGAPAIVTTPLRCRKCGRLGHNAHECTYREVTCFNYQGKGHLSTNCPHPR 384
Query: 313 KVRVGGKV 320
K + G +
Sbjct: 385 KEKRSGSL 408
>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
Length = 1138
Score = 53.1 bits (126), Expect = 2e-07
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Frame = +2
Query: 223 RPKPYSAPTDKGKQRLN---DERRPSK--RDAPAEIVCFKCGEKGHKSNVCTK------- 270
R PY + +G R N + +RP R+ P +C CG GH ++ CT
Sbjct: 290 RDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNC 469
Query: 271 -----------DEKKCFRCGQKGHMLADCKR-----GDV-VCYNCNEEGHISTQCTQPK 312
+E C CG+ GH +C GD+ +C NC ++GHI+ +CT K
Sbjct: 470 KEPGHMASSCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEK 646
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 254 VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQC 308
+C C ++GH + CT +EK C C + GH+ DC D +C CN GH++ QC
Sbjct: 590 LCNNCYKQGHIAAECT-NEKACNNCRKTGHLARDCP-NDPICNLCNVSGHVARQC 748
Score = 45.1 bits (105), Expect = 6e-05
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 25/87 (28%)
Frame = +2
Query: 247 RDAPAEIVCFKCGEKGHKSNVCTKD-------------------------EKKCFRCGQK 281
RD P + +C C GH + C K + C C Q
Sbjct: 683 RDCPNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGGGGGYRDVVCRNCQQL 862
Query: 282 GHMLADCKRGDVVCYNCNEEGHISTQC 308
GHM DC ++C+NC GH++ +C
Sbjct: 863 GHMSRDCMGPLMICHNCGGRGHLAYEC 943
Score = 37.4 bits (85), Expect = 0.012
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 252 EIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRG 291
++VC C + GH S C C CG +GH+ +C G
Sbjct: 833 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSG 952
>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
Length = 655
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 254 VCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQC 308
+C C ++GH + CT +EK C C + GH+ DC D +C CN GH++ QC
Sbjct: 75 LCNNCYKQGHIAAECT-NEKACNNCRKTGHLARDCP-NDPICNLCNVSGHVARQC 233
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/84 (27%), Positives = 33/84 (38%), Gaps = 22/84 (26%)
Frame = +3
Query: 247 RDAPAEIVCFKCGEKGHKSNVCTKD----------------------EKKCFRCGQKGHM 284
RD P + +C C GH + C K + C C Q GHM
Sbjct: 168 RDCPNDPICNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGGYRDVVCRNCQQLGHM 347
Query: 285 LADCKRGDVVCYNCNEEGHISTQC 308
DC ++C+NC GH++ +C
Sbjct: 348 SRDCMGPLMICHNCGGRGHLAYEC 419
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/57 (31%), Positives = 31/57 (53%), Gaps = 6/57 (10%)
Frame = +3
Query: 258 CGEKGHKSNVCTK------DEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQC 308
CG+ GH++ C+ D + C C ++GH+ A+C + C NC + GH++ C
Sbjct: 9 CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC-TNEKACNNCRKTGHLARDC 176
Score = 37.4 bits (85), Expect = 0.012
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 252 EIVCFKCGEKGHKSNVCTKDEKKCFRCGQKGHMLADCKRG 291
++VC C + GH S C C CG +GH+ +C G
Sbjct: 309 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSG 428
Score = 37.0 bits (84), Expect = 0.016
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +3
Query: 278 CGQKGHMLADCKR-----GDV-VCYNCNEEGHISTQCTQPK 312
CG+ GH +C GD+ +C NC ++GHI+ +CT K
Sbjct: 9 CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEK 131
>TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L16.11 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(10%)
Length = 1300
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = +1
Query: 242 RRPSKRDAPAEIVCFKCGEKGHKSNVCTKD----EKKCFRCGQKGHMLADCKR-GDVV-- 294
R +D EI C+ C GH V T D E C++CGQ GH C R D +
Sbjct: 307 RNDYSQDDLKEIQCYVCKRLGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEITS 486
Query: 295 ------CYNCNEEGHISTQCTQPKK 313
C+ C EEGH + +CT K
Sbjct: 487 GATPSSCFKCGEEGHFARECTSSIK 561
Score = 48.9 bits (115), Expect = 4e-06
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Frame = +1
Query: 233 KGKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSNVCTKD-------EKKCFRCGQKGHML 285
KG R D + + +C KCG GH C D E +C+ C + GH+
Sbjct: 199 KGGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLGHLC 378
Query: 286 A----DCKRGDVVCYNCNEEGHISTQCTQ 310
D G++ CY C + GH C++
Sbjct: 379 CVNTDDATPGEISCYKCGQLGHTGLACSR 465
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCT--KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQ 310
CF CGE+GH + C+ K +K C+ CG GH C + C+ C + GH + C +
Sbjct: 61 CFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQCSKVQ-DCFICKKGGHRAKDCPE 231
Score = 32.0 bits (71), Expect = 0.50
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDEKKCFRCGQKGH 283
CFKCGE+GH + CT K R + H
Sbjct: 505 CFKCGEEGHFARECTSSIKSGKRNWESSH 591
Score = 29.6 bits (65), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 295 CYNCNEEGHISTQCTQPKK 313
C+NC EEGH + C+ K+
Sbjct: 61 CFNCGEEGHAAVNCSAVKR 117
>CO980191
Length = 802
Score = 46.2 bits (108), Expect(2) = 2e-06
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1
Query: 104 VVTWAVFRREFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAK 153
V+T VF+ FL ++ ED+ K+ EFLELK G+M V Y F EL K
Sbjct: 361 VIT*EVFKEIFLEKHLHEDI*NHKKTEFLELKHGNMIVANYLVNFDELPK 510
Score = 23.1 bits (48), Expect(2) = 2e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 165 FSKCIKFENGLRADIKRAIGYQQIRIFSDLVSRCRIYEED 204
+ KC+KF N L I ++I Y I F ++ C EED
Sbjct: 503 YPKCVKFVNHLPHKIIQSINYL*IH*FL-IL*ECGPNEED 619
>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
(62%)
Length = 1131
Score = 49.7 bits (117), Expect = 2e-06
Identities = 23/49 (46%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Frame = +1
Query: 274 KCFRCGQKGHMLADCKRGD--VVCYNCNEEGHISTQC-TQPKKVRVGGK 319
+CF CG GH DCK GD CY C E GHI C PKK+ G+
Sbjct: 361 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSQRGR 507
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Frame = +1
Query: 234 GKQRLNDERRPSKRDAPAEIVCFKCGEKGHKSNVCTKDE--KKCFRCGQKGHMLADCK 289
G + D + P CF CG GH + C + KC+RCG++GH+ +CK
Sbjct: 301 GPRGSRDREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 474
Score = 29.6 bits (65), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 255 CFKCGEKGHKSNVCTKDEKKCFRCGQK 281
C++CGE+GH C KK + G++
Sbjct: 430 CYRCGERGHIEKNCKNSPKKLSQRGRR 510
>TC227589
Length = 547
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/91 (30%), Positives = 41/91 (44%), Gaps = 13/91 (14%)
Frame = +2
Query: 233 KGKQRLND--ERRPSKRDAPAEIVCFKCGEKGHKSNVCTKD-------EKKCFRCGQKGH 283
KG R D E+ S+ + A +C KCG GH C D E +C+ C + GH
Sbjct: 185 KGGHRAKDCLEKHTSRSKSVA--ICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGH 358
Query: 284 MLA----DCKRGDVVCYNCNEEGHISTQCTQ 310
+ D G++ CY C + GH C++
Sbjct: 359 LCCVNTDDATPGEISCYKCGQLGHTGLACSK 451
Score = 47.4 bits (111), Expect = 1e-05
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Frame = +2
Query: 252 EIVCFKCGEKGHKSNVCTKD----EKKCFRCGQKGHM-LADCKRGDVV--------CYNC 298
EI C+ C GH V T D E C++CGQ GH LA K D + C C
Sbjct: 323 EIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSKLPDEITSAATPSSCCKC 502
Query: 299 NEEGHISTQCTQP 311
E GH + +CT P
Sbjct: 503 GEAGHFAQECTSP 541
Score = 47.0 bits (110), Expect = 2e-05
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 255 CFKCGEKGHKSNVCT--KDEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQ 310
CF CGE GH + C+ K +K C+ CG GH C + C+ C + GH + C +
Sbjct: 47 CFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQCTKAQ-DCFICKKGGHRAKDCLE 217
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 9/48 (18%)
Frame = +2
Query: 250 PAEIVCFKCGEKGHKSNVCTK--DE-------KKCFRCGQKGHMLADC 288
P EI C+KCG+ GH C+K DE C +CG+ GH +C
Sbjct: 389 PGEISCYKCGQLGHTGLACSKLPDEITSAATPSSCCKCGEAGHFAQEC 532
Score = 28.9 bits (63), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 295 CYNCNEEGHISTQCTQPKK 313
C+NC E+GH + C+ K+
Sbjct: 47 CFNCGEDGHAAVNCSAAKR 103
>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
(22%)
Length = 742
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/80 (28%), Positives = 33/80 (40%), Gaps = 24/80 (30%)
Frame = +2
Query: 255 CFKCGEKGHKSNVCTKDEKK---------CFRCGQKGHMLADCKR--------------- 290
CF+CG GH + C + CFRCG+ GH+ DC
Sbjct: 230 CFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRFGGGGGSGGGG 409
Query: 291 GDVVCYNCNEEGHISTQCTQ 310
G C+NC + GH + +C +
Sbjct: 410 GKSTCFNCGKPGHFARECVE 469
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Frame = +2
Query: 245 SKRDAPAEIVCFKCGEKGHKSNVCTKDEKK----------CFRCGQKGHMLADCKR---- 290
++R+ C++CGE GH + C + CF CG GH+ DC R
Sbjct: 14 ARRNGGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVRGGGG 193
Query: 291 --------GDVVCYNCNEEGHISTQCTQPKKVRVGG 318
G C+ C GH++ C K +GG
Sbjct: 194 SVGIGGGGGGGSCFRCGGFGHMARDCATGKG-NIGG 298
Score = 45.4 bits (106), Expect = 4e-05
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Frame = +2
Query: 255 CFKCGEKGHKSNVCTKDEK------------KCFRCGQKGHMLADCKRG---------DV 293
CF CG GH + C + CFRCG GHM DC G
Sbjct: 134 CFNCGGFGHLARDCVRGGGGSVGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGG 313
Query: 294 VCYNCNEEGHISTQC 308
C+ C E GH++ C
Sbjct: 314 GCFRCGEVGHLARDC 358
Score = 37.4 bits (85), Expect = 0.012
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Frame = +2
Query: 275 CFRCGQKGHMLADCKRGDVV----------CYNCNEEGHISTQCTQPKKVRVGGKVFALT 324
C++CG+ GH+ DC R C+NC GH++ C VR GG +
Sbjct: 44 CYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDC-----VRGGGGSVGIG 208
Query: 325 G 325
G
Sbjct: 209 G 211
>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
Length = 1623
Score = 48.9 bits (115), Expect = 4e-06
Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 274 KCFRCGQKGHMLADCKRGD--VVCYNCNEEGHISTQC-TQPKKV 314
+CF CG GH DCK GD CY C E GHI C PKK+
Sbjct: 311 RCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKL 442
Score = 42.0 bits (97), Expect = 5e-04
Identities = 16/37 (43%), Positives = 23/37 (61%), Gaps = 2/37 (5%)
Frame = +2
Query: 255 CFKCGEKGHKSNVCTKDE--KKCFRCGQKGHMLADCK 289
CF CG GH + C + KC+RCG++GH+ +CK
Sbjct: 314 CFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCK 424
Score = 28.1 bits (61), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 255 CFKCGEKGHKSNVCTKDEKK 274
C++CGE+GH C KK
Sbjct: 380 CYRCGERGHIERNCKNSPKK 439
>TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), partial (6%)
Length = 1204
Score = 46.6 bits (109), Expect = 2e-05
Identities = 28/97 (28%), Positives = 38/97 (38%), Gaps = 18/97 (18%)
Frame = -3
Query: 242 RRPSKRDAPAEIVCFKCGEKGHKSNVCTK------DEKKCFRCGQKGHMLADCKRGD--- 292
+ P K + + C C + GH+ C + DE+ CF CG+ GH L C
Sbjct: 560 KSPFKHHGESSLRCRACRQPGHRFQQCQRLKCLSMDEEVCFFCGEIGHSLGKCDVSQAGG 381
Query: 293 ---VVCYNCNEEGHISTQCTQ------PKKVRVGGKV 320
C C GH S C Q PK + V G +
Sbjct: 380 GRFAKCLLCYGHGHFSYNCPQNGHGIDPKVLAVNGAI 270
>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
(AT4g38680/F20M13_240), partial (42%)
Length = 891
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Frame = +3
Query: 275 CFRCGQKGHMLADCKR-------------GDVVCYNCNEEGHISTQC 308
C++CG+ GH+ DC + G CYNC E GH + C
Sbjct: 231 CYKCGETGHIARDCSQGGGGGGRYGGGGGGGGSCYNCGESGHFARDC 371
Score = 28.5 bits (62), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 295 CYNCNEEGHISTQCTQ 310
CY C E GHI+ C+Q
Sbjct: 231 CYKCGETGHIARDCSQ 278
>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
partial (45%)
Length = 995
Score = 37.0 bits (84), Expect = 0.016
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 20/55 (36%)
Frame = +2
Query: 274 KCFRCGQKGHMLADCKRGDVV--------------------CYNCNEEGHISTQC 308
+C+ CG+ GH+ DC G C+NC EEGH + +C
Sbjct: 422 ECYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFAREC 586
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 35.4 bits (80), Expect = 0.045
Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 40/308 (12%)
Frame = +1
Query: 1 MAGRNDAAIA---AALEAVAQAVQQQPQAGNG-----EVRMLETFLRNHPPAFKGRYDPD 52
M ND+ + A + V Q +Q P + +G + + +F R+D
Sbjct: 145 MQSTNDSQFSQLNAVMSQVLQRLQNIPMSSHGASNSQKEQQRSSFQVRSVKLDFPRFDGK 324
Query: 53 GAQSWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQNGAVVTWAVFRR 112
W+ + E+ F + ++ + L ++ W+ +L++ +W F R
Sbjct: 325 NVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWY----QMLQKTEPFSSWQAFTR 492
Query: 113 EFLNRYFPEDVRGRKEIEFLELKQGDMSVVEYAAKFVELAKFYPHYAPETAEFSKCIKFE 172
L F +L Q +V EY +F L + E C F
Sbjct: 493 A-LELDFGPSAYDCPRATLFKLNQ-SATVNEYYMQFTALVNRVDGLSAEA--ILDC--FV 654
Query: 173 NGLRADIKRAIGYQQIRIFSDLVSRCRIYEEDTKAHYKVMSERRGKGHQNRPKPYSAPTD 232
+GL+ +I R + + R + V+ +++EE K S + K N + +++ T
Sbjct: 655 SGLQEEISRDVKAMEPRTLTKAVALAKLFEE------KYTSPPKTKTFSNLARNFTSNTS 816
Query: 233 KGKQ-----RLNDERRPS--------------------KRDAPAEI-------VCFKCGE 260
++ + ND +P+ K+ +PAEI +C+ C E
Sbjct: 817 ATQKYPPTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAEIQLRREKNLCYFCDE 996
Query: 261 KGHKSNVC 268
K ++ C
Sbjct: 997 KFSPAHKC 1020
>CO984873
Length = 754
Score = 34.7 bits (78), Expect = 0.077
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 11/42 (26%)
Frame = -2
Query: 270 KDEKKCFRCGQKGHMLADCKR-----------GDVVCYNCNE 300
K+E KCF C +KGH+ DC + D VCY N+
Sbjct: 372 KNESKCFFCNKKGHIKKDCSKFKSWLNKKNIPFDFVCYESNK 247
Score = 28.9 bits (63), Expect = 4.2
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -2
Query: 194 LVSRCRIYEEDTKAHYKVMSERRGKGHQNRPKPYSAPTD---KGKQRLNDERRPSKRDAP 250
L++ RI ++ K V+ +R+G NR K + KG Q N + +K
Sbjct: 546 LITHIRISDQLMKF*LCVVKKRKG*S*-NREKRVNLTLHGMKKGDQAKNKGKITAKPVIK 370
Query: 251 AEIVCFKCGEKGHKSNVCTK 270
E CF C +KGH C+K
Sbjct: 369 NESKCFFCNKKGHIKKDCSK 310
>BE804023
Length = 407
Score = 34.3 bits (77), Expect = 0.10
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 1/60 (1%)
Frame = -3
Query: 255 CFKCGEKGHKSNVCTK-DEKKCFRCGQKGHMLADCKRGDVVCYNCNEEGHISTQCTQPKK 313
C C +KGH C K + KC +C Q GH + V+C N N+ + + + PK+
Sbjct: 219 C*HCRKKGHPPFRC*KRPDAKCSQCNQMGHEV-------VICKNRNQSHNEAAKVVDPKE 61
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/66 (22%), Positives = 20/66 (29%), Gaps = 32/66 (48%)
Frame = +3
Query: 275 CFRCGQKGHMLADCK--------------------------------RGDVVCYNCNEEG 302
C+ CG+ GH+ DC G CY+C E G
Sbjct: 435 CYNCGESGHLARDCSGGGGGDRYGGGGGGGRYGGGGGGRYVGGGGGGGGGGSCYSCGESG 614
Query: 303 HISTQC 308
H + C
Sbjct: 615 HFARDC 632
Score = 29.3 bits (64), Expect = 3.2
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +3
Query: 291 GDVVCYNCNEEGHISTQCT 309
G CYNC E GH++ C+
Sbjct: 423 GGGACYNCGESGHLARDCS 479
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,536,773
Number of Sequences: 63676
Number of extensions: 276858
Number of successful extensions: 1398
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of query: 396
length of database: 12,639,632
effective HSP length: 99
effective length of query: 297
effective length of database: 6,335,708
effective search space: 1881705276
effective search space used: 1881705276
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC136954.7