BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136954.11 + phase: 0
(174 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229886 similar to UP|TAFA_MOUSE (Q8K0H5) Transcription initiat... 223 5e-59
TC221475 similar to UP|Q8S8A0 (Q8S8A0) Expressed protein, partia... 134 2e-32
BE611626 127 2e-30
TC231176 79 1e-15
BF070977 similar to GP|18087570|gb| AT3g54650/T5N23_10 {Arabidop... 32 0.20
TC219365 similar to UP|Q6IEM2 (Q6IEM2) WRKY transcription factor... 32 0.20
TC212197 32 0.20
TC205610 weakly similar to UP|Q6K624 (Q6K624) BRI1-KD interactin... 30 0.58
TC216111 UP|O23957 (O23957) Dehydrin, complete 29 0.98
TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protei... 29 0.98
TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 29 0.98
TC209293 homologue to UP|RN12_HUMAN (Q9NVW2) RING finger protein... 28 1.7
TC218917 similar to GB|AAT41852.1|48310609|BT014869 At3g25600 {A... 28 1.7
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 28 2.2
TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {... 28 2.2
TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P3... 28 2.2
TC230693 homologue to UP|Q6HEM2 (Q6HEM2) Cytochrome c oxidase, s... 28 2.9
TC229018 weakly similar to UP|Q75K99 (Q75K99) Expressed protein,... 28 2.9
TC229548 similar to UP|Q9SLT8 (Q9SLT8) ZCW7 protein, partial (55%) 28 2.9
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 28 2.9
>TC229886 similar to UP|TAFA_MOUSE (Q8K0H5) Transcription initiation factor
TFIID subunit 10 (Transcription initiation factor TFIID
30 kDa subunit) (TAF(II)30) (TAFII-30) (mTAFII30),
partial (7%)
Length = 756
Score = 223 bits (567), Expect = 5e-59
Identities = 116/143 (81%), Positives = 126/143 (87%), Gaps = 3/143 (2%)
Frame = +3
Query: 1 MAAYREPMNV--SERAPISSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS 58
MAAYREPMN+ S+RAP+S Q PHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS
Sbjct: 54 MAAYREPMNMNMSDRAPVSPQQPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS 233
Query: 59 GYLEGNGESERDLEAGERNND-TDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSR 117
GYLEGNGE+ERDLEAGE D KPYEEKILVIMAGQ+KPTFLATPS+S S STSR
Sbjct: 234 GYLEGNGETERDLEAGETEQDQKPAKPYEEKILVIMAGQEKPTFLATPSVS---SCSTSR 404
Query: 118 SSSFGDNTSTCTCEHDKDQKSIE 140
SSSFGDNTSTCTCE +++KS+E
Sbjct: 405 SSSFGDNTSTCTCE--ENRKSLE 467
>TC221475 similar to UP|Q8S8A0 (Q8S8A0) Expressed protein, partial (37%)
Length = 505
Score = 134 bits (337), Expect = 2e-32
Identities = 73/102 (71%), Positives = 76/102 (73%), Gaps = 6/102 (5%)
Frame = +2
Query: 16 ISSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGNGESERDLE--A 73
IS HS WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSG L +ERDLE A
Sbjct: 83 ISPYSQHSTWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGQLLNEENAERDLESVA 262
Query: 74 GERNNDTDQKP----YEEKILVIMAGQDKPTFLATPSMSSST 111
GE+ D+ K YEEKILVIMAG DKPTFLATP SS T
Sbjct: 263 GEKQGDSANKDSVKVYEEKILVIMAGDDKPTFLATPKASSVT 388
>BE611626
Length = 419
Score = 127 bits (320), Expect = 2e-30
Identities = 67/94 (71%), Positives = 73/94 (77%), Gaps = 7/94 (7%)
Frame = +3
Query: 23 SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGNGESERDLEA---GERNND 79
S WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSG L+ +ERDLE+ GE+ D
Sbjct: 24 STWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGQLQNEENAERDLESVVGGEKQGD 203
Query: 80 TDQKP----YEEKILVIMAGQDKPTFLATPSMSS 109
+ K YEEKILVIMAG +KPTFLATP SS
Sbjct: 204 SANKESVTVYEEKILVIMAGDEKPTFLATPKASS 305
>TC231176
Length = 580
Score = 78.6 bits (192), Expect = 1e-15
Identities = 55/128 (42%), Positives = 70/128 (53%), Gaps = 15/128 (11%)
Frame = +3
Query: 8 MNVSERAPISSQVPHSP---WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGN 64
M + P SS V S W SP+PYLFGGLA ML +I+ AL+IL CSY K +
Sbjct: 3 MRAIKSVPTSSPVSGSGINIWKSPIPYLFGGLAVMLAIISMALVILVCSYRKRDSQ-SSS 179
Query: 65 GESERDLE-----AGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSST-------S 112
SE D E A +N +T+ +P ++LVIMAG PT+LA P SSS+
Sbjct: 180 SSSEVDQEEIKSQAMSKNLETNSEP---EVLVIMAGNHNPTYLAKPITSSSSIYCTCGAQ 350
Query: 113 TSTSRSSS 120
T+ S SSS
Sbjct: 351 TNPSSSSS 374
>BF070977 similar to GP|18087570|gb| AT3g54650/T5N23_10 {Arabidopsis
thaliana}, partial (2%)
Length = 277
Score = 31.6 bits (70), Expect = 0.20
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 106 SMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGENHVRRTES 165
S+SS+TS STS S S T + DQ++ E T + G G+N RR S
Sbjct: 265 SVSSNTSESTSSSGSDRSTTGRRSSRSSNDQRATEIRRRLSETGRGRGRDGDNGERRIGS 86
>TC219365 similar to UP|Q6IEM2 (Q6IEM2) WRKY transcription factor 59, partial
(33%)
Length = 788
Score = 31.6 bits (70), Expect = 0.20
Identities = 21/46 (45%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKS-IENMNDEES 147
+T + SS +TS+ S FGD TST T H K Q S I+ N E S
Sbjct: 217 STETESSEKATSSDASHGFGDATSTNTNMHIKCQNSGIKGKNAEVS 354
>TC212197
Length = 423
Score = 31.6 bits (70), Expect = 0.20
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2
Query: 93 MAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTC 128
+A D P FLATPS ST T+ S+S+S D C
Sbjct: 185 VATYDPPHFLATPSQVVSTYTNASKSNSLLDT*IKC 78
>TC205610 weakly similar to UP|Q6K624 (Q6K624) BRI1-KD interacting protein
135, partial (7%)
Length = 752
Score = 30.0 bits (66), Expect = 0.58
Identities = 22/82 (26%), Positives = 34/82 (40%)
Frame = +3
Query: 93 MAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
M + + AT + S ST +S+ S G+ + KD K+I E S +G
Sbjct: 366 MDASSRSSGAATSNRSKGASTKSSQKSKDGNKS--------KDSKTISKPEGEVSRKSKG 521
Query: 153 GGGGENHVRRTESVETPTTDTS 174
G + S ++ TDTS
Sbjct: 522 GSSKSTVAAKKFSNKSKITDTS 587
>TC216111 UP|O23957 (O23957) Dehydrin, complete
Length = 862
Score = 29.3 bits (64), Expect = 0.98
Identities = 20/73 (27%), Positives = 33/73 (44%)
Frame = +2
Query: 102 LATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGENHVR 161
LAT S + RSSS ++S + + +K +++ E+ G GGG N+
Sbjct: 302 LATQPRSGREARELRRSSSSSSSSSEDDGQGGRRKKGVKDKIKEK---LPGVGGGNNNKE 472
Query: 162 RTESVETPTTDTS 174
+ PTT T+
Sbjct: 473 HAHTTTAPTTATN 511
>TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protein [imported]
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(88%)
Length = 1085
Score = 29.3 bits (64), Expect = 0.98
Identities = 22/63 (34%), Positives = 26/63 (40%)
Frame = +2
Query: 94 AGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQGG 153
AG + + S SSS S+S S SSS G S E S S + GG
Sbjct: 545 AGAGSGSGSGSGSSSSSASSSASSSSSSGSGGSGAGSEAGSYAGSRAGSGSGRSQGRGGG 724
Query: 154 GGG 156
GGG
Sbjct: 725 GGG 733
>TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (14%)
Length = 642
Score = 29.3 bits (64), Expect = 0.98
Identities = 17/31 (54%), Positives = 23/31 (73%), Gaps = 1/31 (3%)
Frame = +2
Query: 100 TFLATPSMSSSTSTSTS-RSSSFGDNTSTCT 129
T +A+ S S+STST+T+ R+SSF TST T
Sbjct: 326 TTVASTSTSASTSTTTTARTSSFTTTTSTTT 418
Score = 26.6 bits (57), Expect = 6.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTC 130
AT S S++ +TSTS SSS T T +C
Sbjct: 428 AT*STSTTLATSTSTSSSLATTTFTPSC 511
>TC209293 homologue to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM
domain interacting RING finger protein) (RING finger LIM
domain-binding protein) (R-LIM) (NY-REN-43 antigen),
partial (4%)
Length = 957
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +3
Query: 77 NNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQ 136
++D+D + ++ G D T S S+S+S+S SSS G S E ++++
Sbjct: 117 HHDSDSESPTNCPAGVLCGTDSGTNFTGSSSGGSSSSSSSSSSSSGGCCSGNVTEVEEEE 296
Query: 137 KSIENMNDEE 146
+ ++ +D++
Sbjct: 297 EGDDDDDDDD 326
>TC218917 similar to GB|AAT41852.1|48310609|BT014869 At3g25600 {Arabidopsis
thaliana;} , partial (94%)
Length = 623
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 99 PTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCE 131
P+ L +P SSST +S+SRSS +T T +
Sbjct: 335 PSCLTSPRASSSTRSSSSRSSGLSTVMATATSQ 433
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -3
Query: 106 SMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEEST 148
S SSS+S+S+S SSS +T++ T + S + + ST
Sbjct: 378 SPSSSSSSSSSSSSSSASSTTSSTDSYSSSSSSTKTLTSFSST 250
>TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {Arabidopsis
thaliana;} , partial (22%)
Length = 978
Score = 28.1 bits (61), Expect = 2.2
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = +3
Query: 100 TFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
T +AT SS+T + + + NTSTC+C + K+ N + ST G
Sbjct: 372 TAVATTKDSSNTGQNIPCTCTSKGNTSTCSCTY----KAGSNTSSHSSTANTG 518
>TC219510 UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase HD2-P39, complete
Length = 1196
Score = 28.1 bits (61), Expect = 2.2
Identities = 31/121 (25%), Positives = 45/121 (36%), Gaps = 12/121 (9%)
Frame = +3
Query: 49 ILACSYWKLSG------YLEGNGESERDLEAGERNNDTDQKPYEEKILVIMAGQDK---P 99
+ C Y L+G + + + E E G+ N + K K+ K P
Sbjct: 330 VFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAEGAKVTKPSKSIPKIGAP 509
Query: 100 TFLATPSMSSST-STSTSRSSSFGDNTSTCTCEHDKDQKSIENMN--DEESTVKQGGGGG 156
A P S S G++ S + E D D S E + DEE+ K+GG G
Sbjct: 510 AKAADPKKDEDDDSDDESDDDLAGEDESGSSHEMDDDSNSEEESDGDDEETPAKKGGSGQ 689
Query: 157 E 157
E
Sbjct: 690 E 692
>TC230693 homologue to UP|Q6HEM2 (Q6HEM2) Cytochrome c oxidase, subunit III
, partial (6%)
Length = 630
Score = 27.7 bits (60), Expect = 2.9
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = +1
Query: 106 SMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQ 136
S SSS+ STS +S F NT TC H K Q
Sbjct: 514 SPSSSSILSTSATS*FCHNTDTCCF*HSKIQ 606
>TC229018 weakly similar to UP|Q75K99 (Q75K99) Expressed protein, partial
(41%)
Length = 819
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +1
Query: 17 SSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACS 53
S Q+PHS + V Y G L +L +++ L ACS
Sbjct: 427 SGQMPHSSTRNTVDYCCGRLVYLL*VLSTLTLAAACS 537
>TC229548 similar to UP|Q9SLT8 (Q9SLT8) ZCW7 protein, partial (55%)
Length = 1419
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = +1
Query: 104 TPSMSSSTSTSTSRSSSFGDNTSTCT 129
TPS S T+TSTSR+S N S T
Sbjct: 223 TPSRSPRTTTSTSRASRTSRNASATT 300
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/30 (46%), Positives = 22/30 (72%)
Frame = -3
Query: 100 TFLATPSMSSSTSTSTSRSSSFGDNTSTCT 129
+F ++ S SSS+S+S+S SSS +TS+ T
Sbjct: 249 SFSSSSSSSSSSSSSSSSSSSSSSSTSSST 160
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,459
Number of Sequences: 63676
Number of extensions: 107359
Number of successful extensions: 1396
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of query: 174
length of database: 12,639,632
effective HSP length: 91
effective length of query: 83
effective length of database: 6,845,116
effective search space: 568144628
effective search space used: 568144628
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC136954.11