BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136953.11 + phase: 0 /pseudo
(615 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO984521 68 1e-11
TC231841 68 1e-11
TC211809 68 1e-11
BG404993 68 1e-11
TC213061 64 4e-11
TC221865 64 3e-10
CO979823 64 3e-10
CF921567 63 4e-10
AW595917 62 7e-10
TC233392 62 7e-10
TC222789 61 2e-09
CO986021 60 4e-09
BI974689 60 4e-09
BU765000 59 5e-09
TC223713 59 8e-09
TC231922 58 1e-08
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 57 2e-08
CA851073 57 2e-08
TC213899 57 2e-08
TC233777 54 2e-07
>CO984521
Length = 716
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = -2
Query: 264 ERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTRIR 323
E G YS KSAY + H V V + + +W L+ P KV IF WR ++ LPT+
Sbjct: 625 EPSGCYSTKSAYKAL--HHVTVGEEQ-DGKFKELWKLRVPLKVAIFAWRLIQDKLPTKAN 455
Query: 324 LQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIF 372
L+ K V+ + C + E ++HLFF C+K W S W+ +M +F
Sbjct: 454 LRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQSWVNMMGVF 305
>TC231841
Length = 791
Score = 67.8 bits (164), Expect = 1e-11
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Frame = +3
Query: 262 KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTR 321
K + G Y+ KSAY + V + +W LK PSK+ IF WR R+ LPTR
Sbjct: 78 KADPSGQYTAKSAYGVLWGEMFEEQQDGVFEE---LWKLKLPSKITIFAWRLIRDRLPTR 248
Query: 322 IRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYIDLSFPT 380
L+ K ++ D +C E + HLFF C++ W S W+ L+ +F + P
Sbjct: 249 SNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGVF---PNHPR 419
Query: 381 NVFAILQHLDQQQKQVFSVTPGVYGS 406
F LQH ++ VT G+ S
Sbjct: 420 QHF--LQH-------IYGVTAGMRAS 470
>TC211809
Length = 895
Score = 67.8 bits (164), Expect = 1e-11
Identities = 36/107 (33%), Positives = 55/107 (50%), Gaps = 1/107 (0%)
Frame = +2
Query: 267 GAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTRIRLQS 326
G YS KSAY ++ A V + +W+LK PSK +F WR ++ LPT L+
Sbjct: 200 GNYSTKSAYRLLME---ATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLRV 370
Query: 327 KGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIF 372
+ V+ D +C + + ED+ HLFF C K+ W + W+ + F
Sbjct: 371 RQVELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAF 511
>BG404993
Length = 412
Score = 67.8 bits (164), Expect = 1e-11
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = -3
Query: 262 KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTR 321
K + G YS K+AY + A+ + +W LK P K +F WR + LPT+
Sbjct: 317 KADPSGNYSTKTAYELLQE---AIRGDNEDGIFVQLWKLKIPPKAPVFTWRLINDRLPTK 147
Query: 322 IRLQSKGVQCTDK-CAVRDDFAEDSTHLFFMCNKSMICWQRSGLWI 366
+ L+ + V+ +D C + ++ ED+ HLFF CNK++ W S W+
Sbjct: 146 VNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWESLSWV 9
>TC213061
Length = 823
Score = 63.9 bits (154), Expect(2) = 4e-11
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +2
Query: 264 ERDGAYSVKSAYTNILNHDVAVVHHRVPDN-----WTCIWSLKFPSKVKIFLWRACRNCL 318
E G+Y +SAY V+ +P+ + +W LK P KV +F WR ++ L
Sbjct: 149 ESSGSYLARSAYR--------VIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDIL 304
Query: 319 PTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIF 372
PTR L+ K V+ + C + E ++HLFF C+K + W S W+ L+ F
Sbjct: 305 PTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIWWESLSWVKLVGAF 469
Score = 22.3 bits (46), Expect(2) = 4e-11
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 400 TPGVYGSIETIRYGTMLLKQL 420
+PG++GSIE MLL L
Sbjct: 561 SPGLFGSIEMTLSSPMLLSTL 623
>TC221865
Length = 1045
Score = 63.5 bits (153), Expect = 3e-10
Identities = 42/121 (34%), Positives = 62/121 (50%), Gaps = 3/121 (2%)
Frame = -3
Query: 249 SIIPFGNH--DVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKV 306
S P H D V K E +G YS +SAY +++ H+ A + + IW LK P+K
Sbjct: 698 SRFPIHRHLTDCWVWKSEPNGHYSTRSAY-HLMQHEAAKAN--TDPAFEEIWKLKIPAKA 528
Query: 307 KIFLWRACRNCLPTRIRLQSKGVQCTDK-CAVRDDFAEDSTHLFFMCNKSMICWQRSGLW 365
IF R ++ LPT+ L+ + VQ C ++ E+++HLFF C K+ W S W
Sbjct: 527 AIFA*RLVKDRLPTKNNLRRRQVQLNGTLCLFCRNYEEEASHLFFSCTKTQPVWWESLSW 348
Query: 366 I 366
I
Sbjct: 347 I 345
>CO979823
Length = 853
Score = 63.5 bits (153), Expect = 3e-10
Identities = 36/108 (33%), Positives = 53/108 (48%), Gaps = 1/108 (0%)
Frame = -2
Query: 262 KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTR 321
K E G YS KS Y + + ++ IW LK P+K +F WR R+ LPT+
Sbjct: 687 KPEPGGHYSTKSGYHVLWGELTEEIQDA---DFAEIWKLKIPTKAAVFAWRLVRDRLPTK 517
Query: 322 IRLQSKGVQCTDK-CAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILL 368
L+ + V D C + ++ E + HLFF C K++ W S W+ L
Sbjct: 516 SNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNL 373
>CF921567
Length = 686
Score = 62.8 bits (151), Expect = 4e-10
Identities = 41/119 (34%), Positives = 56/119 (46%), Gaps = 1/119 (0%)
Frame = -1
Query: 266 DGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTRIRLQ 325
+G YS KSAY + + + RV + +WSLK P + F WR +N LPTR L+
Sbjct: 677 NGLYSTKSAYKVL*EGHASAIEDRVLN---IMWSLKIPPRASAFSWRLFKNRLPTRENLK 507
Query: 326 SKGVQC-TDKCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYIDLSFPTNVF 383
+ V T C + D E HLFF C+K+ W W+ + F D P N F
Sbjct: 506 RRQVSLHTYSCPLCDLEEESVNHLFFNCSKTRSLWWEPLRWVNRVGPFPTD---PKNHF 339
>AW595917
Length = 404
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +1
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCAVRDDFAEDSTHLFFMCNKSM 356
+W LK P K +F WR ++ LPT+ L+ + C + ++ ED+THLFF C+K++
Sbjct: 7 LWKLKIPPKAAVFTWRLIKDQLPTKANLRRQMEISDSLCPLCNNSKEDATHLFFNCSKTL 186
Query: 357 ICWQRSGLWILLMAIFYIDL 376
W S W+ + F DL
Sbjct: 187 PFWWESLSWVKTVGAFPKDL 246
>TC233392
Length = 1145
Score = 62.0 bits (149), Expect = 7e-10
Identities = 38/119 (31%), Positives = 55/119 (45%), Gaps = 4/119 (3%)
Frame = -1
Query: 257 DVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
D V K E + YS +SAY + H + +W LK P+K IF WR R+
Sbjct: 656 DTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQD---LWKLKIPAKASIFAWRLIRD 486
Query: 317 CLPTRIRLQSKGVQCTDK----CAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAI 371
LPT+ L + V D C +R+ ED++H+F CNK W S W+ + +
Sbjct: 485 RLPTKSNLHRRQVVLEDSLCPFCRIRE---EDASHIFLECNKIRPLWWESQTWVRSLGV 318
>TC222789
Length = 954
Score = 60.8 bits (146), Expect = 2e-09
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDK-CAVRDDFAEDSTHLFFMCNKS 355
+W LK P K ++F WR R+ LPT++ L + +Q D+ C + ED+ HLFF C+K
Sbjct: 362 LWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRNVEEDAGHLFFHCSKI 541
Query: 356 MICWQRSGLWI 366
+ W S W+
Sbjct: 542 IPIWWESLSWV 574
>CO986021
Length = 900
Score = 59.7 bits (143), Expect = 4e-09
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = -1
Query: 262 KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTR 321
K + G YS KSAY +L ++ H N+ +W LK P + ++F WR R+ L R
Sbjct: 768 KADPTGIYSTKSAYRLLLPNNRPGQHS---SNFKILWKLKIPPRAELFSWRLFRDRLSIR 598
Query: 322 IRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYID 375
L + V D C + + E++ HLFF C ++ W S W + F D
Sbjct: 597 ANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWWESMNWTRTLGAFLDD 433
>BI974689
Length = 409
Score = 59.7 bits (143), Expect = 4e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -1
Query: 289 RVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDKCA 336
R+ NW IW+LK P KVK + R R+CLP+R+RL +KGVQC CA
Sbjct: 403 RLQGNWKKIWALKVPPKVKHLIRRIQRDCLPSRVRLHAKGVQCPSTCA 260
>BU765000
Length = 425
Score = 59.3 bits (142), Expect = 5e-09
Identities = 29/77 (37%), Positives = 41/77 (52%), Gaps = 1/77 (1%)
Frame = +2
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKS 355
+W LK P KV +F WR ++ LPTR L+ K V+ + C E + HLFF C K
Sbjct: 59 LWKLKVPPKVAVFAWRLLKDRLPTRDNLRRKQVELHEYLCPFCRTMEESACHLFFHCRKV 238
Query: 356 MICWQRSGLWILLMAIF 372
+ W S W+ L+ +F
Sbjct: 239 LPVWWESLSWVNLVGVF 289
>TC223713
Length = 420
Score = 58.5 bits (140), Expect = 8e-09
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 264 ERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRNCLPTRIR 323
++ G Y+ ++AY + +V + R + + LK P K +F WR R+ LPT+
Sbjct: 19 DQSGQYTAQTAYNLMREVEVGGIQDRAFEE---L*KLKVPIKFAVFAWRLLRDRLPTKAN 189
Query: 324 LQSKGVQCTDK-CAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIF 372
L + ++ T++ C + E++ HLFF C+K + W + W+ + F
Sbjct: 190 LHRRQIEVTNRSCPFCSNMEEEAGHLFFHCSKIIPIWWETSSWVNISGPF 339
>TC231922
Length = 803
Score = 57.8 bits (138), Expect = 1e-08
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = -3
Query: 256 HDVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACR 315
HD K + G YS KSAY ++ R+ + +W LK P + +F WR
Sbjct: 447 HDSMFWKADSSGVYSTKSAYRLLMPSISPAPSRRI---FQILWHLKIPPRAAVFSWRLFL 277
Query: 316 NCLPTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLWILLMAIFYI 374
+ LPTR L + + D C + E++ HLFF C + W S WI ++
Sbjct: 276 DRLPTRGNLSRRSIPIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPA 97
Query: 375 D 375
D
Sbjct: 96 D 94
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/74 (41%), Positives = 43/74 (57%), Gaps = 4/74 (5%)
Frame = +2
Query: 299 SLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTDK----CAVRDDFAEDSTHLFFMCNK 354
S+K P+K+ IF+WR R+ LPTR +LQ + VQ D C V++ E++ HLFF C K
Sbjct: 62 SIKVPNKIAIFVWRLIRDRLPTRHKLQRRQVQVADMSCPFCRVKE---ENAGHLFFHCTK 232
Query: 355 SMICWQRSGLWILL 368
W + WI L
Sbjct: 233 IQPLWWEAMSWINL 274
>CA851073
Length = 633
Score = 57.4 bits (137), Expect = 2e-08
Identities = 35/110 (31%), Positives = 52/110 (46%), Gaps = 1/110 (0%)
Frame = +1
Query: 257 DVPV*KFERDGAYSVKSAYTNILNHDVAVVHHRVPDNWTCIWSLKFPSKVKIFLWRACRN 316
D V K + G YS KSAY ++ + V + + IW LK P + +F WR ++
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILMTCNRHVSEANI---FKTIWKLKIPPRAAVFSWRLIKD 198
Query: 317 CLPTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMICWQRSGLW 365
LPTR L + V + +C + E++ HLFF C + W S W
Sbjct: 199 RLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRW 348
>TC213899
Length = 497
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 297 IWSLKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKS 355
+W LK P K+ F WR ++ LPTRI L + ++ + C E + HLFF C+K
Sbjct: 69 LWKLKVP*KIAAFAWRLLKDRLPTRINL*KRQIEMVESSCPFCSLVEESAGHLFFQCSKI 248
Query: 356 MICWQRSGLWILLMAIF 372
+ W S W+ L+ +F
Sbjct: 249 IQVWWESLSWVNLVGVF 299
>TC233777
Length = 503
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/68 (39%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Frame = +2
Query: 300 LKFPSKVKIFLWRACRNCLPTRIRLQSKGVQCTD-KCAVRDDFAEDSTHLFFMCNKSMIC 358
+K PSK+ +F WR RN LPTR L + +Q D C ED HLF C+K
Sbjct: 17 IKVPSKISVFAWRLLRNRLPTRTNLHRRQLQIIDMSCPFCRCSEEDEAHLFIHCSKIQPL 196
Query: 359 WQRSGLWI 366
W S W+
Sbjct: 197 WWESMSWL 220
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.364 0.161 0.620
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,557,242
Number of Sequences: 63676
Number of extensions: 532489
Number of successful extensions: 8254
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 341
Number of HSP's that attempted gapping in prelim test: 4614
Number of HSP's gapped (non-prelim): 4088
length of query: 615
length of database: 12,639,632
effective HSP length: 103
effective length of query: 512
effective length of database: 6,081,004
effective search space: 3113474048
effective search space used: 3113474048
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC136953.11