BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136840.7 - phase: 0 /pseudo
(638 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 149 5e-36
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 106 3e-34
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 68 5e-24
CO982349 99 6e-21
TC212765 70 7e-21
TC213164 80 2e-15
AW757033 68 1e-11
BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase... 58 1e-08
BI315739 57 2e-08
BI972659 55 7e-08
BI321779 49 7e-06
AI496436 44 2e-04
CA851997 43 4e-04
BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase ... 40 0.002
TC234877 39 0.009
TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance... 39 0.009
AW201165 37 0.021
BI471325 35 0.078
TC221821 weakly similar to UP|WSC2_YEAST (P53832) Cell wall inte... 35 0.13
AW101881 34 0.17
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 149 bits (375), Expect = 5e-36
Identities = 93/278 (33%), Positives = 144/278 (51%)
Frame = +1
Query: 357 NAIVLQEVIHYMRISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHC 416
+A++ EVI + + K + FK+D EKA+D+V+W+FL + F IK I C
Sbjct: 7 SALIANEVIDEAK--RSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEEC 180
Query: 417 VTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHV 476
V S+S S+L NG+ F P GLRQGDPL+P+LF + E L+ + AV++ ++P V
Sbjct: 181 VKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLV 360
Query: 477 SNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQ 536
G +S L +ADD + F +A + I+ + F S L+IN KS F GVT
Sbjct: 361 GANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKS-CFGVFGVTD 537
Query: 537 DKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGR 596
+ YLG PI + + II K +++L+ W+ + ++ GR
Sbjct: 538 QWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGR 717
Query: 597 LALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ L VL+SI Y+ +PQSV D + ++ R F+W
Sbjct: 718 VTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLW 831
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 106 bits (265), Expect(2) = 3e-34
Identities = 49/120 (40%), Positives = 79/120 (65%)
Frame = -3
Query: 410 IKLIMHCVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQG 469
++L+ +C+++++ S+LWNG L F P G+RQ DP++PYLF+LC+E+LS IN + +
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 470 SWEPIHVSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAF 529
I V+ G +SHL F DD++LF +AN Q+ I + FS SG K+N+ K+++F
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSF 327
Score = 57.4 bits (137), Expect(2) = 3e-34
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = -2
Query: 542 LTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALAS 601
++S G++ T L KYLG PI P F FIIDK+ KR + W++ LL+ GRL L
Sbjct: 288 ISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSNLLSMVGRLTLTK 109
Query: 602 FVLSSISTYYMQIN 615
V+ ++ ++ MQ +
Sbjct: 108 *VV*ALPSHIMQFD 67
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 68.2 bits (165), Expect(2) = 5e-24
Identities = 35/131 (26%), Positives = 67/131 (50%)
Frame = -2
Query: 484 SHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLT 543
SH++ ADD+++F K S + + + F + G I+ HKS+ F S + ++ ++
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGS-IPGQRLRVIS 275
Query: 544 SISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFV 603
+ + Y G PI KG+P + + DK++ +LASW+ +L+ GR+ L + V
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 604 LSSISTYYMQI 614
+ + Y +
Sbjct: 94 IHGMLLYSFSV 62
Score = 61.6 bits (148), Expect(2) = 5e-24
Identities = 41/96 (42%), Positives = 52/96 (53%)
Frame = -3
Query: 356 DNAIVLQEVIHYMRISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMH 415
D V EVI+ M K G +A KID+ KAFD ++ DFL S L FG+ T I
Sbjct: 828 DCTCVTSEVIN-MLDKKVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIRV 652
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLF 451
+ S+ SI NG + F G+RQGDPLSP L+
Sbjct: 651 ILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
>CO982349
Length = 795
Score = 99.0 bits (245), Expect = 6e-21
Identities = 66/223 (29%), Positives = 106/223 (46%), Gaps = 1/223 (0%)
Frame = +3
Query: 413 IMHCVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWE 472
I C+ S+S SIL N + + F P GLRQGDPL+P LF + E L+ + AV + +
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 473 PIHVSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSS 532
V +S L +ADD + F +A ++ I+ + F SGLKIN +SR F +
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESR-FGAI 428
Query: 533 GVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLF-IIDKMQKRLASWQNKLL 591
+ YLG P I+ P+ + II K + +LA W+ + +
Sbjct: 429 WKPDHWCKEAAEFLNCSMLSMPFSYLGIP-IEANPRCREI*DPIIRKCETKLARWKQRHI 605
Query: 592 NKPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
+ GR+ L + +L+++ Y+ P V + + R F+W
Sbjct: 606 SLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLW 734
>TC212765
Length = 637
Score = 70.1 bits (170), Expect(2) = 7e-21
Identities = 44/128 (34%), Positives = 63/128 (48%)
Frame = +3
Query: 448 PYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFADDVLLFTKANSTQLRFIR 507
PYLF+LCME+L+ I++ Q W PI VS+ + +L+ DD+ LF A
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 508 DLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRP 567
F + GLK+NL KS + S + + +++ I SL KYL I GR
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIHGRS 374
Query: 568 KKSDFLFI 575
K DFL +
Sbjct: 375 KIVDFLLV 398
Score = 49.3 bits (116), Expect(2) = 7e-21
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 583 LASWQNKLLNKPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIW 634
LASW+ KLLN+ + L VL + Y M+ +WLPQS+ ID+ +R IW
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIW 571
>TC213164
Length = 446
Score = 80.5 bits (197), Expect = 2e-15
Identities = 45/137 (32%), Positives = 71/137 (50%)
Frame = +3
Query: 229 SELPY*ALNKKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHF 288
S+L KK+V A + K+PGPDG + F K++ I+ D+ + F
Sbjct: 9 SDLLVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVF 188
Query: 289 DPSISDTLIALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSF 348
+ +ALIPKV P + +++PISL IYKI+ K+L R + +L II Q+ F
Sbjct: 189 LKRSNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVF 368
Query: 349 LPGRSTTDNAIVLQEVI 365
+ GR T N ++ E++
Sbjct: 369 MEGRHTLHNVVIANEIM 419
>AW757033
Length = 441
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/94 (39%), Positives = 51/94 (53%)
Frame = -2
Query: 434 FEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFADDVL 493
F P GLRQGDPL+P LF + E L+ + AV + ++ V +S L +ADD +
Sbjct: 431 FSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTI 252
Query: 494 LFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSR 527
F +A +R I+ + F SGLKIN KSR
Sbjct: 251 FFGEATMENVRVIKTILRGFELASGLKINFAKSR 150
>BE329487 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (15%)
Length = 376
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/88 (34%), Positives = 43/88 (48%)
Frame = -2
Query: 241 VTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALI 300
+ +A+ K+PGPDG + F K + + D+ F + + IALI
Sbjct: 375 IKSAVWQCGSVKSPGPDGLNFKFIKHFWERLKPDIIRFLNEFHANGIFPKGGNASFIALI 196
Query: 301 PKVDPPLTYKDFRPISLCNIIYKIITKV 328
PKV P DFRPISL +YKI+ K+
Sbjct: 195 PKVKHPQALNDFRPISLIGCVYKIVAKI 112
>BI315739
Length = 442
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 445 PLSPYLFILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFADDVLLFT-KANSTQL 503
PLSPYLF +CMEKL+ I + V + +WEPI +S GP +S + + ++ F K +L
Sbjct: 48 PLSPYLF*ICMEKLAILIQSKVNEETWEPIKISRNGPGISPIYSSQIIVYFL*KPLVLKL 227
Query: 504 RFIRDLFDRF--SKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRCTTSLDKYLGFP 561
+ + F + S R F + G ++ + + G L
Sbjct: 228 NW*EMCCNSFV*PEVS--------RRVFKNPGF*HKRMCLIEKLPG---------SLL** 356
Query: 562 IIKGRPKKSDFLFIIDKMQKRLASWQNK 589
++ GR KK DF ++D + RL W++K
Sbjct: 357 LLAGRTKKEDFAHVVDMINNRLDGWKSK 440
>BI972659
Length = 453
Score = 55.5 bits (132), Expect = 7e-08
Identities = 34/129 (26%), Positives = 60/129 (46%)
Frame = +1
Query: 506 IRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSISGIRCTTSLDKYLGFPIIKG 565
++ + F SGL+IN KS+ F G + + + R YLG PI
Sbjct: 34 LKSMLRGFEMVSGLRINYAKSQ-FGIVGFQPNWAHDAAQLLNCRQLDIPFHYLGMPIAVK 210
Query: 566 RPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTYYMQINWLPQSVCDNI 625
+ + +I+K + +L+ W K L+ GR+ L VL+++ Y + +PQ + D +
Sbjct: 211 ASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKL 390
Query: 626 DQVTRNFIW 634
+ R F+W
Sbjct: 391 VSLQRTFMW 417
>BI321779
Length = 421
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/76 (32%), Positives = 38/76 (49%)
Frame = +2
Query: 252 KAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDPPLTYKD 311
K+PGPDG+ + K + ++ ++V N + + IALI K D PL
Sbjct: 143 KSPGPDGYSLLLIKIFWEVIKEEVINFFKEFHKFDFLPRGTNRSFIALIAKCDNPLDIGQ 322
Query: 312 FRPISLCNIIYKIITK 327
+ PISL +YKI+ K
Sbjct: 323 YCPISLVGCLYKIV*K 370
>AI496436
Length = 414
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/116 (27%), Positives = 54/116 (45%), Gaps = 2/116 (1%)
Frame = +1
Query: 513 FSKFSGLKINLHKSR--AFYSSGVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKS 570
F SGLKIN KS+ S + + + + S + YLG PI
Sbjct: 16 FELSSGLKINFAKSQFGTICKSDIWRKEAADYLNSSVLSMPF---VYLGIPIGANSRHSD 186
Query: 571 DFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTYYMQINWLPQSVCDNID 626
+ ++ K +++LASW+ K ++ GR+ L + VL+++ Y + +P V D D
Sbjct: 187 VWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDKVVDKAD 354
>CA851997
Length = 636
Score = 43.1 bits (100), Expect = 4e-04
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +1
Query: 246 HSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIALIPKVDP 305
+S +P PDGF+ F+ ++ + G+DVF F S++DT IA+I ++
Sbjct: 286 NSRRPLLQILPDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI** 465
Query: 306 PLTYKDFRPISLCNIIYKI--ITKVLVHRLRPILN 338
Y+ LCN +KI +++VL RL+ +L+
Sbjct: 466 S*RYERS*TNLLCNGGFKILFLSEVLAKRLKNVLD 570
>BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase (EC
2.7.7.49) (clone AmLi2) - garden snapdragon (fragment),
partial (22%)
Length = 111
Score = 40.4 bits (93), Expect = 0.002
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 416 CVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPY 449
C++S+S SIL NG+ F+P GLRQG P P+
Sbjct: 7 CLSSASISILVNGSPTEEFKPXRGLRQGGPFGPF 108
>TC234877
Length = 534
Score = 38.5 bits (88), Expect = 0.009
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +1
Query: 557 YLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTYYMQINW 616
YL P+ + +P+ I D+++ L SW+ LL+ G + L ++ + +
Sbjct: 49 YLSVPLFQEKPRPVHLRPIADRIKAELQSWKGNLLSFMGCVQLIISIIDGMLL*SFHLYS 228
Query: 617 LPQSVCDNIDQVTRNFIW 634
P+++ + TRNFIW
Sbjct: 229 WPKALLIEMQTWTRNFIW 282
>TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance
protein-like protein (Fragment), partial (74%)
Length = 781
Score = 38.5 bits (88), Expect = 0.009
Identities = 32/117 (27%), Positives = 50/117 (42%)
Frame = +3
Query: 410 IKLIMHCVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQG 469
I+ I S S+ G F T GL QG LSPYLF L ++ L+ I V +
Sbjct: 45 IRAIQDMYDRVSTSVRTQGGESDDFPITIGLHQGSTLSPYLFTLILDVLTEQIQEIVSR- 221
Query: 470 SWEPIHVSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKS 526
+LFADD++L ++ +L + + R + G +++ KS
Sbjct: 222 ---------------CMLFADDIVLLGESRE-KLNERLETWRRALETHGFRLSRSKS 344
>AW201165
Length = 413
Score = 37.4 bits (85), Expect = 0.021
Identities = 26/81 (32%), Positives = 43/81 (52%)
Frame = -1
Query: 311 DFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDNAIVLQEVIHYMRI 370
++R I L + K+ +V+ RLR + Q F+PGRST + +L+ V+ R+
Sbjct: 245 NYRGIKLMSHTMKLWERVIERRLRK--ETQVTENQFGFMPGRSTMEAIYLLRRVMEQYRM 72
Query: 371 SKKKKGYVAFKIDLEKAFDNV 391
+++ + IDLEKA D V
Sbjct: 71 AQQDLHLIF--IDLEKASDRV 15
>BI471325
Length = 421
Score = 35.4 bits (80), Expect = 0.078
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = +2
Query: 483 LSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQ 536
LSHLL D LF + + ++++ F SGL +NL KS +S +Q
Sbjct: 44 LSHLLSVDFYFLFCRTIDKEADVLKNILTTFEASSGLVVNLRKSEICFSRNTSQ 205
>TC221821 weakly similar to UP|WSC2_YEAST (P53832) Cell wall integrity and
stress response component 2 precursor, partial (6%)
Length = 735
Score = 34.7 bits (78), Expect = 0.13
Identities = 34/121 (28%), Positives = 58/121 (47%)
Frame = +3
Query: 461 AINNAVQQGSWEPIHVSNPGPKLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLK 520
A+ A +W P +++P P+ A LL ++A+S + + D S+ + +
Sbjct: 198 ALPPASSSCTWAPNALASPSPR------ASSTLLSSRASSNKPKKSSD-----SEVTAVW 344
Query: 521 INLHKSRAFYSSGVTQDKINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQ 580
+L KSR+ +S T + NT T +S + TSL + P I R K S FL + + Q
Sbjct: 345 SSLAKSRSSLTSSSTSTRTNTSTEVSLFK--TSLTCFPPPPPIPVR-KTSPFLLLCSRKQ 515
Query: 581 K 581
+
Sbjct: 516 R 518
>AW101881
Length = 251
Score = 34.3 bits (77), Expect = 0.17
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -1
Query: 526 SRAFYSSGVTQD------KINTLTSISGIRCTTSLDKYLGFPIIKGRPKKSDF 572
S +FYS Q +I ++++ G++ + + YLG PI KG P+K F
Sbjct: 230 SMSFYSDSYNQTWMICFRRIQEISNLLGLKVSNAPFDYLGIPIFKGNPRKISF 72
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.350 0.156 0.550
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,753,499
Number of Sequences: 63676
Number of extensions: 490150
Number of successful extensions: 4465
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3325
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 3518
length of query: 638
length of database: 12,639,632
effective HSP length: 103
effective length of query: 535
effective length of database: 6,081,004
effective search space: 3253337140
effective search space used: 3253337140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC136840.7