BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136838.2 - phase: 2
(90 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214495 homologue to emb|X52320.1|AT3RRNA Arabidopsis thaliana ... 180 9e-47
TC214608 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 180 9e-47
BE822937 172 2e-44
TC214497 153 1e-38
TC214610 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 134 1e-32
TC214611 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 115 5e-27
BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabido... 76 2e-15
BI942004 75 6e-15
CA851769 67 2e-12
CK605818 48 1e-06
TC208912 homologue to dbj|AB026819.1| Magnaporthe grisea genes f... 35 1e-05
BU544836 41 9e-05
TC214527 weakly similar to UP|Q7FPX7 (Q7FPX7) Polygalacturonase ... 36 0.003
TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partia... 28 0.60
BF595885 similar to GP|10176887|db eukaryotic translation initia... 28 0.78
BG507351 27 1.3
TC225847 UP|OLE2_SOYBN (P29531) P24 oleosin isoform B (P91), com... 27 2.3
BE021028 27 2.3
CK606387 27 2.3
TC204075 homologue to gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S... 27 2.3
>TC214495 homologue to emb|X52320.1|AT3RRNA Arabidopsis thaliana genes for
5.8S rRNA and 25S rRNA with 18S rRNA fragment, partial
(12%)
Length = 862
Score = 180 bits (457), Expect = 9e-47
Identities = 83/90 (92%), Positives = 86/90 (95%)
Frame = -1
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPDWGCIPKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP YNS+
Sbjct: 715 LGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSD 536
Query: 61 AEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
AEGDRFSWWA+PGSLAVTKGILVSFFSSAY
Sbjct: 535 AEGDRFSWWAFPGSLAVTKGILVSFFSSAY 446
>TC214608 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (14%)
Length = 689
Score = 180 bits (457), Expect = 9e-47
Identities = 83/90 (92%), Positives = 86/90 (95%)
Frame = -3
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPDWGCIPKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP YNS+
Sbjct: 306 LGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSD 127
Query: 61 AEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
AEGDRFSWWA+PGSLAVTKGILVSFFSSAY
Sbjct: 126 AEGDRFSWWAFPGSLAVTKGILVSFFSSAY 37
>BE822937
Length = 539
Score = 172 bits (437), Expect = 2e-44
Identities = 79/87 (90%), Positives = 82/87 (93%)
Frame = +3
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPDWGCIPKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP YNS+
Sbjct: 267 LGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSD 446
Query: 61 AEGDRFSWWAYPGSLAVTKGILVSFFS 87
AEGDRFSWWA+PGSLAVTKGIL SFFS
Sbjct: 447 AEGDRFSWWAFPGSLAVTKGILXSFFS 527
>TC214497
Length = 625
Score = 153 bits (387), Expect = 1e-38
Identities = 72/86 (83%), Positives = 77/86 (88%)
Frame = -2
Query: 5 LPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAEGD 64
+ P+ PKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP YNS+AEGD
Sbjct: 294 MQPEHSHFPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGD 115
Query: 65 RFSWWAYPGSLAVTKGILVSFFSSAY 90
RFSWWA+PGSLAVTKGILVSFFSSAY
Sbjct: 114 RFSWWAFPGSLAVTKGILVSFFSSAY 37
>TC214610 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (8%)
Length = 426
Score = 134 bits (336), Expect = 1e-32
Identities = 61/67 (91%), Positives = 63/67 (93%)
Frame = -3
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPDWGCIPKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP YNS+
Sbjct: 259 LGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSD 80
Query: 61 AEGDRFS 67
AEGDRFS
Sbjct: 79 AEGDRFS 59
>TC214611 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (7%)
Length = 368
Score = 115 bits (287), Expect = 5e-27
Identities = 57/76 (75%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = -2
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPDWGCIPKQPDSPT PRGATGS H+GALTLSGAPFQGTWARSA EDASP
Sbjct: 262 LGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPGVQFG 83
Query: 61 AEG-DRFSWWAYPGSL 75
G F PGSL
Sbjct: 82 RRGRPIFMSGLLPGSL 35
>BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabidopsis
thaliana}, partial (23%)
Length = 394
Score = 76.3 bits (186), Expect = 2e-15
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = -2
Query: 42 QGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
+G+ A + SP YNS+AEGDRFSWWA+PGSLAVTKGILVSFFSSAY
Sbjct: 183 EGSEAERSVIMLSPDYNSDAEGDRFSWWAFPGSLAVTKGILVSFFSSAY 37
>BI942004
Length = 421
Score = 75.1 bits (183), Expect = 6e-15
Identities = 34/37 (91%), Positives = 36/37 (96%)
Frame = -3
Query: 54 SPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
SP YNS+AEGDRFSWWA+PGSLAVTKGILVSFFSSAY
Sbjct: 125 SPDYNSDAEGDRFSWWAFPGSLAVTKGILVSFFSSAY 15
>CA851769
Length = 137
Score = 67.0 bits (162), Expect = 2e-12
Identities = 28/34 (82%), Positives = 29/34 (84%)
Frame = -3
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGAL 34
LGRN PPDWGCIPKQPDSPT PRGA GS H+ AL
Sbjct: 102 LGRNXPPDWGCIPKQPDSPTAPRGAXGSGHDXAL 1
>CK605818
Length = 430
Score = 47.8 bits (112), Expect = 1e-06
Identities = 28/57 (49%), Positives = 31/57 (54%)
Frame = -1
Query: 32 GALTLSGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSS 88
GALTL G PFQGT R A P + RF WA SLAV++ I V FFSS
Sbjct: 193 GALTLCGVPFQGT--RKAPRQKHPLQITTRAEARFQIWAVAASLAVSRAIPVGFFSS 29
>TC208912 homologue to dbj|AB026819.1| Magnaporthe grisea genes for 18S rRNA,
5.8S rRNA, 26S rRNA, complete sequence, rDNA repeat unit
sequence, partial (4%)
Length = 381
Score = 35.4 bits (80), Expect(2) = 1e-05
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = -3
Query: 40 PFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
P G +A++ +S YNS RF A SLAVT+ I V FFSSAY
Sbjct: 202 PVPGNSEGTASKVSSTNYNSGPRA-RFQI*AVAASLAVTRAIPVGFFSSAY 53
Score = 28.1 bits (61), Expect(2) = 1e-05
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 27 GSEHNGALTLSGAPFQGT 44
G + +GALTL G PFQGT
Sbjct: 240 GIQPDGALTLYGVPFQGT 187
>BU544836
Length = 304
Score = 41.2 bits (95), Expect = 9e-05
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +3
Query: 1 LGRNLPPDWGCIPKQPDSPTTPR 23
LGRNLPPDWGCIPK PT PR
Sbjct: 240 LGRNLPPDWGCIPK----PTRPR 296
>TC214527 weakly similar to UP|Q7FPX7 (Q7FPX7) Polygalacturonase inhibitor
protein, partial (59%)
Length = 868
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2
Query: 1 LGRNLPPDWGCIP 13
LGRNLPPDWGCIP
Sbjct: 39 LGRNLPPDWGCIP 1
>TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partial (97%)
Length = 830
Score = 28.5 bits (62), Expect = 0.60
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1 LGRNLPPDWG 10
LGRNLPPDWG
Sbjct: 189 LGRNLPPDWG 218
>BF595885 similar to GP|10176887|db eukaryotic translation initiation
factor 3 subunit 7 {Arabidopsis thaliana}, partial
(22%)
Length = 417
Score = 28.1 bits (61), Expect = 0.78
Identities = 18/57 (31%), Positives = 23/57 (39%)
Frame = +1
Query: 6 PPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAE 62
PP P S +PR A S +GA + S + G +S AS N AE
Sbjct: 13 PPPPTTTPPSASSTESPRRAPNSAPSGASSSSASSLSGATRKSRPRSASRRRNEPAE 183
>BG507351
Length = 438
Score = 27.3 bits (59), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 5 LPPDWGCIPKQPDSPTTP 22
LPP C+ + P SPTTP
Sbjct: 141 LPPPCTCLSRSPPSPTTP 194
>TC225847 UP|OLE2_SOYBN (P29531) P24 oleosin isoform B (P91), complete
Length = 1027
Score = 26.6 bits (57), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = -3
Query: 6 PPDWGCIPKQPDSPTTPRGATG 27
PP G P++PDSP TP G+ G
Sbjct: 563 PPPDGASPQRPDSP-TPAGSPG 501
>BE021028
Length = 388
Score = 26.6 bits (57), Expect = 2.3
Identities = 17/69 (24%), Positives = 21/69 (29%)
Frame = +2
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
+G LPP P P SP P S +L + + G W
Sbjct: 71 VGFPLPPSSEKFPHAPPSPLIPEKMAASVRRNSLEETSSTSSGRWVLPTTGSGW----MG 238
Query: 61 AEGDRFSWW 69
G R WW
Sbjct: 239 *RGRRLKWW 265
>CK606387
Length = 270
Score = 26.6 bits (57), Expect = 2.3
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 32 GALTLSGAPFQGT 44
GALTL G PFQGT
Sbjct: 92 GALTLCGVPFQGT 54
>TC204075 homologue to gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S
and 23S mRNA, partial (6%)
Length = 752
Score = 26.6 bits (57), Expect = 2.3
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -1
Query: 70 AYPGSLAVTKGILVSFFSSAY 90
A P SLA T GI +FFSS Y
Sbjct: 392 AAPISLAATTGIAFAFFSSGY 330
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.132 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,575,209
Number of Sequences: 63676
Number of extensions: 57857
Number of successful extensions: 301
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of query: 90
length of database: 12,639,632
effective HSP length: 66
effective length of query: 24
effective length of database: 8,437,016
effective search space: 202488384
effective search space used: 202488384
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC136838.2