BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136838.16 + phase: 1 /pseudo
(68 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214462 homologue to gb|AF036501.1| Lithophragma trifoliata lar... 132 4e-32
TC214536 homologue to UP|O65357 (O65357) Aquaporin 2, partial (29%) 115 4e-27
BG352214 homologue to SP|Q05006|CC22_ Cell division control prot... 57 2e-09
CA851694 similar to GP|6715146|gb| proprotein convertase aPC6C i... 33 2e-04
CF808357 39 7e-04
TC214600 homologue to gb|AF036489.1|AF036489 Ephedra distachya l... 30 0.24
AW164307 homologue to GP|15795116|dbj jasmonic acid regulatory p... 28 0.70
TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen prec... 28 0.70
TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, p... 28 0.91
BM178493 28 0.91
TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfe... 28 0.91
AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransfera... 28 0.91
CF921623 28 1.2
CK606365 28 1.2
CF922495 27 1.5
TC234552 similar to UP|Q9LPR2 (Q9LPR2) F15H18.5, partial (10%) 27 1.5
TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 27 1.5
TC234391 27 2.0
TC228675 weakly similar to UP|Q9GV74 (Q9GV74) Differentiation as... 27 2.0
TC224633 similar to GB|CAA48253.1|288063|ATKARE ketol-acid reduc... 27 2.6
>TC214462 homologue to gb|AF036501.1| Lithophragma trifoliata large subunit 26S
ribosomal RNA gene, partial sequence, partial (63%)
Length = 2159
Score = 132 bits (331), Expect = 4e-32
Identities = 62/68 (91%), Positives = 64/68 (93%)
Frame = -3
Query: 1 VPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILH 60
VPPQPNSPPDNVFRPDRP + LGSKKRGSAP PIHGISKITLKVVVFHFRCFQLPLILH
Sbjct: 1389 VPPQPNSPPDNVFRPDRPAEADLGSKKRGSAPLPIHGISKITLKVVVFHFRCFQLPLILH 1210
Query: 61 LSSYFTKS 68
LSS+FTKS
Sbjct: 1209 LSSHFTKS 1186
>TC214536 homologue to UP|O65357 (O65357) Aquaporin 2, partial (29%)
Length = 614
Score = 115 bits (288), Expect = 4e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Frame = +1
Query: 4 QPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILHLSS 63
+PNSPPDNVFRPDRP + LGSKKRGSAP PIHGISKITLKVVVFHFRCFQLPLILHLSS
Sbjct: 325 EPNSPPDNVFRPDRPAEADLGSKKRGSAPLPIHGISKITLKVVVFHFRCFQLPLILHLSS 504
>BG352214 homologue to SP|Q05006|CC22_ Cell division control protein 2
homolog 2 (EC 2.7.1.-). [Alfalfa] {Medicago sativa},
partial (20%)
Length = 276
Score = 56.6 bits (135), Expect = 2e-09
Identities = 24/29 (82%), Positives = 26/29 (88%)
Frame = -2
Query: 4 QPNSPPDNVFRPDRPTKVGLGSKKRGSAP 32
+PNSPPDNVFRPDRP + LGSKKRGSAP
Sbjct: 92 EPNSPPDNVFRPDRPAEADLGSKKRGSAP 6
>CA851694 similar to GP|6715146|gb| proprotein convertase aPC6C isoform
{Branchiostoma californiense}, partial (2%)
Length = 325
Score = 33.1 bits (74), Expect(2) = 2e-04
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = -1
Query: 34 PIHGISKITLKVVVFHFRCFQLPLILHL 61
P + +SK ++KVVVFH+R PL+LHL
Sbjct: 148 PFYRLSKESMKVVVFHWRPCGSPLMLHL 65
Score = 26.2 bits (56), Expect(2) = 2e-04
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2
Query: 1 VPPQPNSPPDNV 12
VPPQ NSPPD V
Sbjct: 255 VPPQSNSPPDTV 220
>CF808357
Length = 616
Score = 38.5 bits (88), Expect = 7e-04
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 3 PQPNSPPDNVFRPDRPTK 20
PQ NSPPDNVFRPDRP +
Sbjct: 233 PQANSPPDNVFRPDRPAE 180
>TC214600 homologue to gb|AF036489.1|AF036489 Ephedra distachya large
subunit 26S ribosomal RNA gene, partial sequence,
partial (14%)
Length = 677
Score = 30.0 bits (66), Expect = 0.24
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = -1
Query: 1 VPPQPNSPPDNV 12
VPPQPNSPP+NV
Sbjct: 38 VPPQPNSPPENV 3
>AW164307 homologue to GP|15795116|dbj jasmonic acid regulatory protein-like
{Arabidopsis thaliana}, partial (23%)
Length = 435
Score = 28.5 bits (62), Expect = 0.70
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = +1
Query: 4 QPNSPPDNVFRP-DRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLP 56
QPN PP F P D V KK SAP P+ I+++ L + F ++LP
Sbjct: 181 QPNLPPGFRFHPTDEELVVHYLKKKTASAPLPVAIIAEVDL----YKFDPWELP 330
>TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen precursor,
partial (30%)
Length = 795
Score = 28.5 bits (62), Expect = 0.70
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Frame = -1
Query: 1 VPPQPNSPPDNVFRPDRPTKVGLGSKKRGS---------APPPI 35
VP P PP+N +P P K+G KK+G PPP+
Sbjct: 318 VPGNPG-PPENPGKPGNPRKLGNPGKKKGKPLLKPKRKPGPPPM 190
Score = 25.4 bits (54), Expect = 5.9
Identities = 14/39 (35%), Positives = 18/39 (45%), Gaps = 2/39 (5%)
Frame = -1
Query: 1 VPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPP--PIHG 37
+PP P +PP VF PT K G+ P P+ G
Sbjct: 426 MPPTPPTPPKPVFEKPPPTPPPKPGKMPGNPVPGNPVPG 310
>TC207421 similar to UP|Q9FIK7 (Q9FIK7) Acetoacyl-CoA-thiolase, partial (40%)
Length = 821
Score = 28.1 bits (61), Expect = 0.91
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2
Query: 16 DRPTKVGLGSKKRGSAPPP 34
+RPT G+ S+ R APPP
Sbjct: 517 ERPTATGMSSRTRADAPPP 461
>BM178493
Length = 380
Score = 28.1 bits (61), Expect = 0.91
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -3
Query: 56 PLILHLSSYFTKS 68
PLILHLSS+FTKS
Sbjct: 93 PLILHLSSHFTKS 55
>TC212169 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (19%)
Length = 635
Score = 28.1 bits (61), Expect = 0.91
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -1
Query: 16 DRPTKVGLGSKKRGSAPPP 34
+RPT G+ S+ R APPP
Sbjct: 401 ERPTATGMSSRTRADAPPP 345
>AW733435 homologue to GP|16417944|gb acetyl Co-A acetyltransferase {Hevea
brasiliensis}, partial (25%)
Length = 420
Score = 28.1 bits (61), Expect = 0.91
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2
Query: 16 DRPTKVGLGSKKRGSAPPP 34
+RPT G+ S+ R APPP
Sbjct: 404 ERPTATGMSSRTRADAPPP 348
>CF921623
Length = 153
Score = 27.7 bits (60), Expect = 1.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 5 PNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHG 37
P PP N P K KK+G PPP HG
Sbjct: 53 PKPPPRN---PPGGKKQKKNKKKKGGDPPPAHG 142
Score = 25.4 bits (54), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = +1
Query: 4 QPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
+P +PP P R K KK+G PPP
Sbjct: 49 KPQTPPPE---PPRGKKTKKKQKKKGGGPPP 132
>CK606365
Length = 587
Score = 27.7 bits (60), Expect = 1.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
PP P +PP R RP G +G PPP
Sbjct: 90 PPGPPAPPPQTPRESRPP----GGPPKGETPPP 176
>CF922495
Length = 427
Score = 27.3 bits (59), Expect = 1.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
PP F+ +P K KK+G PPP
Sbjct: 1 PPPQKKKKKKFFKKKKPPKKKFPQKKKGDPPPP 99
Score = 26.6 bits (57), Expect = 2.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISKIT 42
PP N + P K KK+G+ PP G+S+ T
Sbjct: 2 PPPKKKKKKNFLKKKNPQKKNFPKKKKGTPPP--QGVSRET 118
>TC234552 similar to UP|Q9LPR2 (Q9LPR2) F15H18.5, partial (10%)
Length = 456
Score = 27.3 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 43 LKVVVFHFRCFQLPLILHLSSYF 65
+KV++FHF C+++ L+ YF
Sbjct: 31 IKVILFHFYCYEVELVEEYILYF 99
>TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (22%)
Length = 1296
Score = 27.3 bits (59), Expect = 1.5
Identities = 14/38 (36%), Positives = 16/38 (41%), Gaps = 3/38 (7%)
Frame = +1
Query: 2 PPQPNSPPDNVFRPDRPTKVGLGS---KKRGSAPPPIH 36
PP P PP VF P P + S + PPP H
Sbjct: 133 PPSPPPPPPPVFSPPPPVQYYYSSPPPPQHSPPPPPPH 246
>TC234391
Length = 737
Score = 26.9 bits (58), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +3
Query: 34 PIHGISKITLKVVVFHFRCFQL 55
P G+SKI L ++ + F CF+L
Sbjct: 420 PKGGLSKIILSILAYEFSCFRL 485
>TC228675 weakly similar to UP|Q9GV74 (Q9GV74) Differentiation associate-1,
partial (4%)
Length = 805
Score = 26.9 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = +3
Query: 15 PDRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILHLS 62
P+RP + SK+R S P P + + L ++ HF Q PL ++ S
Sbjct: 300 PERPLSSQISSKRRPSYPSPRSPLRRHPLVLLCSHF-FTQQPLFINKS 440
>TC224633 similar to GB|CAA48253.1|288063|ATKARE ketol-acid reductoisomerase
{Arabidopsis thaliana;} , partial (20%)
Length = 568
Score = 26.6 bits (57), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 1 VPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
+PP+P+ PP ++F P+ V + PPP
Sbjct: 113 LPPEPSPPPTSLFNRRLPSSVSNP*DFADAPPPP 214
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,518,833
Number of Sequences: 63676
Number of extensions: 80217
Number of successful extensions: 739
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC136838.16