BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136507.9 + phase: 0 /pseudo
(261 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222348 69 4e-15
TC211008 58 4e-09
BU547962 57 6e-09
TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leish... 51 6e-07
TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance ... 49 3e-06
TC213599 homologue to UP|EXBB_PASHA (P72202) Biopolymer transpor... 40 6e-06
TC232226 44 6e-05
CO980191 34 7e-04
AW832520 40 0.001
TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragmen... 37 0.007
CA803034 37 0.009
CD416211 37 0.012
BQ253293 35 0.045
CO981985 27 0.12
CO980802 32 0.29
BG725403 32 0.29
AW350693 31 0.50
TC217031 similar to UP|Q9FQF3 (Q9FQF3) Glutathione S-transferase... 30 0.85
TC212843 30 0.85
TC223668 30 1.1
>TC222348
Length = 995
Score = 68.9 bits (167), Expect(2) = 4e-15
Identities = 35/75 (46%), Positives = 44/75 (58%)
Frame = -2
Query: 101 PIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAIN 160
P PWIK NTD A NP A CG +F N F+G F ++ NSAF A+++ I AI
Sbjct: 328 PDYPWIKCNTDCAARGNPGLAGCGKLFIYSNARFLGNFAYSIAINSAFFAEVMAAIIAIE 149
Query: 161 IAGENNWRNIWLETD 175
A EN W +WL+TD
Sbjct: 148 KAVENRWNFLWLKTD 104
Score = 29.3 bits (64), Expect(2) = 4e-15
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 74 EFVFLKAFKINIHPPRAPLIKEVMW 98
+F LK F ++ HP +A +IK+V W
Sbjct: 413 DFSTLKNFSVSSHPQKAQVIKQVSW 339
>TC211008
Length = 516
Score = 58.2 bits (139), Expect = 4e-09
Identities = 38/147 (25%), Positives = 70/147 (46%), Gaps = 15/147 (10%)
Frame = +1
Query: 98 WIPPIPPWIKVNTDGALTKNPTK----ASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLL 153
W P W+ +NTDG++ +N ++CGG+ RD + ++G F NL S A+L
Sbjct: 64 WRCPXNGWVCLNTDGSVFENHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTSVTLAELW 243
Query: 154 GVITAINIAGENNWRNIWLETDLQLAV-----------LAFKNLNMVPWSLRNKWLNYFE 202
GV+ + +A + + + ++ D A+ AF ++ + +R +WL F
Sbjct: 244 GVVHGLKLAWDLGCKKVKVDIDSGNALGLVRHGPVANDPAFALVSEINELVRKEWLVEF- 420
Query: 203 HVRSMNFLITHIYIEGNSCADCMANVG 229
+H++ E N AD +A++G
Sbjct: 421 ---------SHVFRESNRAADKLAHLG 474
>BU547962
Length = 591
Score = 57.4 bits (137), Expect = 6e-09
Identities = 31/107 (28%), Positives = 53/107 (48%), Gaps = 2/107 (1%)
Frame = -2
Query: 125 GVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVLAFK 184
GV R+HN F+ + +++ ++ A+L + + + EN W +IWLE D + V
Sbjct: 590 GVVRNHNAEFLXXYAESIGQANSTIAELTALRKGLELVLENGWNDIWLEGDAKTLVEIIV 411
Query: 185 NLNMVPWSLRNKWLNYFEHV--RSMNFLITHIYIEGNSCADCMANVG 229
V + + +N+ + NF ++HIY EGN AD A +G
Sbjct: 410 KRRKVRCTEVQRHINHINTILPEFNNFFVSHIYREGNRAADKFAQMG 270
>TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leishmania
major;} , partial (8%)
Length = 1386
Score = 50.8 bits (120), Expect = 6e-07
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Frame = +2
Query: 88 PRAPLIKEVMWIPPIPPWIKVNTDGALTKNPTKAS---CGGVFRDHNNIFIGAFVQNLN- 143
PR W P W+K+N DG+ ++P K+S CGGV RD + ++ F + LN
Sbjct: 458 PREGATTVSRWKKPEIGWVKLNVDGS--RDPYKSSSAGCGGVLRDASAKWLRGFAKKLNP 631
Query: 144 TNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVLAFKN 185
T + +L ++T + +A E N + + +E+D V +N
Sbjct: 632 TYAVHQTELEAILTGLKVASEMNVKKLIVESDSDSVVSMVEN 757
>TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance receptor
PtdSerR (Phosphatidylserine receptor), partial (5%)
Length = 1185
Score = 48.5 bits (114), Expect = 3e-06
Identities = 30/94 (31%), Positives = 48/94 (50%), Gaps = 6/94 (6%)
Frame = +1
Query: 98 WIPPIPPWIKVNTDGA-LTKNPTKASCGGVFRDHNNIFIGAFVQNLNTN---SAFNAKLL 153
W P W+K+N DG+ + + P A CGGV RD + F Q L+ N A +L
Sbjct: 337 WKKPESGWVKLNVDGSRIHEEPASAGCGGVIRDEWGTWCVGFDQKLDPNICRQAHYTELQ 516
Query: 154 GVITAINIAGEN--NWRNIWLETDLQLAVLAFKN 185
++T + +A E+ N + +E+D + AV K+
Sbjct: 517 AILTGLKVAREDMINVEKLVVESDSEPAVNMVKS 618
>TC213599 homologue to UP|EXBB_PASHA (P72202) Biopolymer transport exbB
protein, partial (8%)
Length = 825
Score = 39.7 bits (91), Expect(2) = 6e-06
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +3
Query: 121 ASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAV 180
A+CGG+ RD + + +FV L SAF A+L G +++A + +N+ + D + V
Sbjct: 351 AACGGLLRDCHGRWAASFV*KLGNTSAFVAEL*GAYLGLSLAWDKGDKNLEVNIDSLVVV 530
Query: 181 LAF---KNLNMVPWSLRNK--WL 198
++ K + WSL N WL
Sbjct: 531 VSIKISKQGSASGWSLINTICWL 599
Score = 27.3 bits (59), Expect(2) = 6e-06
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 211 ITHIYIEGNSCADCMAN 227
+ HIY E N CAD +AN
Sbjct: 623 LCHIYREANGCADALAN 673
>TC232226
Length = 667
Score = 44.3 bits (103), Expect = 6e-05
Identities = 23/64 (35%), Positives = 35/64 (53%)
Frame = -3
Query: 36 QARFKDKKNHWKSAIDNIIVAVSLTGNRTKLTSFVNMDEFVFLKAFKINIHPPRAPLIKE 95
+ F +K + SA +I SL G +K ++ EF LK+F +N+HPP+ LIK
Sbjct: 221 EVNFHNKHINLHSATLSISATTSLVGTLSKGHLGHSILEFTLLKSFAVNVHPPKPSLIKR 42
Query: 96 VMWI 99
V W+
Sbjct: 41 VDWV 30
>CO980191
Length = 802
Score = 33.9 bits (76), Expect(2) = 7e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 151 KLLGVITAINIAGENNWRNIWLETDLQLAVLAFKN-LNMVPWSLRNK 196
+L+ + AI+ A EN W N+ LE + L AF+N +VP R K
Sbjct: 105 ELVDAVKAIDFANENGWLNLRLECNFMLVTKAFQNDRRLVPRKNRKK 245
Score = 25.8 bits (55), Expect(2) = 7e-04
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 205 RSMNFLITHIYIEGNSCADCMANVGLT 231
+ MN ++HIY EGN+ +A+ G T
Sbjct: 271 KHMNLFVSHIYREGNTYEIKLASHGTT 351
>AW832520
Length = 423
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 96 VMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRD-HNNIFIG 136
+ W PP K+N DGA+ N K S GGV RD H N IG
Sbjct: 256 IRWSPPPEGLFKLNYDGAVNCNSLKVSAGGVVRDSHGNFVIG 131
>TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragment), partial
(9%)
Length = 1259
Score = 37.4 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 28/46 (59%), Gaps = 5/46 (10%)
Frame = +3
Query: 98 WIPPIP----PWI-KVNTDGALTKNPTKASCGGVFRDHNNIFIGAF 138
W P+P W+ ++N GA ++ A+CGG+FRD+N+ F+ F
Sbjct: 585 WRRPLPLSHGHWLLRLNVSGAYDRSSDTAACGGIFRDNNDRFVLGF 722
>CA803034
Length = 456
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/102 (30%), Positives = 43/102 (41%), Gaps = 5/102 (4%)
Frame = +3
Query: 78 LKAFKINIHPPRAPLIKEVMWIPPIPPW-----IKVNTDGALTKNPTKASCGGVFRDHNN 132
LK F ++ HP +A +IK+V W P P+ V G L A C
Sbjct: 69 LKNFSVSSHPWKAWVIKQVSWKLPDYPFG*NVIQTVQLRGVLVWQ-VVADCS-------- 221
Query: 133 IFIGAFVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLET 174
+ NSAF A+++ I AI+ EN W WL+T
Sbjct: 222 -------YSKGVNSAFFAEVMAAIIAIDKPVENRWDFFWLKT 326
Score = 33.9 bits (76), Expect = 0.077
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Frame = +2
Query: 105 WIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFN----AKLLGVITAIN 160
WIK NTDGA +P A C G+F + F +F+ N ++ N K +G + A N
Sbjct: 152 WIKCNTDGAAKGSPGLAGCCGLFIQ*RSEF--SFLC*GNGSNYCN**ACGK*MGFLLAEN 325
Query: 161 IAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNKWLNYFEHVRSMNFLITHIYIEGNS 220
+ FK L VP ITHIY EGN+
Sbjct: 326 L---------------------FK-LTQVP-------------------SITHIYREGNA 382
Query: 221 CADCMA 226
CAD +A
Sbjct: 383 CADKLA 400
>CD416211
Length = 551
Score = 36.6 bits (83), Expect = 0.012
Identities = 32/124 (25%), Positives = 56/124 (44%), Gaps = 14/124 (11%)
Frame = -3
Query: 91 PLIKEVMWI-------------PPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGA 137
P +K ++W+ PP P IK+NTDG+ NP + GGVFR+ +
Sbjct: 540 PSLKLIIWLGRSKWPLPNPSPSPPDPNTIKINTDGSSFGNPGISGYGGVFRNEHGHVASW 361
Query: 138 FVQNLNTNSAFNAKLLGVITAINIAGENNWRNIWLETDLQLAVL-AFKNLNMVPWSLRNK 196
F L ++ GV++ + + +++ E+D L++L + V W R
Sbjct: 360 F---LGQQWVYD*HKCGVVSN---SKQKG*QSVICESDSALSLLMVYSPSCSVSW--RYS 205
Query: 197 WLNY 200
WL++
Sbjct: 204 WLSF 193
>BQ253293
Length = 420
Score = 34.7 bits (78), Expect = 0.045
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = +2
Query: 94 KEVMWIPPIPPWIKVNTDGALTKNPTKASCGGVFRD 129
K + W PP +K+N + A+ +N ASCGGV RD
Sbjct: 122 KSICWEPPPTVQLKLNCEAAVNRNGM-ASCGGVMRD 226
>CO981985
Length = 903
Score = 27.3 bits (59), Expect(2) = 0.12
Identities = 11/27 (40%), Positives = 16/27 (58%)
Frame = -2
Query: 106 IKVNTDGALTKNPTKASCGGVFRDHNN 132
+K+N DG+ NP+ GG+ RD N
Sbjct: 473 VKLNVDGSSLGNPS*GGFGGILRDSLN 393
Score = 24.6 bits (52), Expect(2) = 0.12
Identities = 18/95 (18%), Positives = 45/95 (46%), Gaps = 6/95 (6%)
Frame = -1
Query: 151 KLLGVITAINIAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNKWLNYFEHVRSMNFL 210
++ + + +A ++NI ++D ++LA + L ++ ++ + + ++
Sbjct: 390 RITSCVRGLTLAWSAVYKNIECDSD---SLLALQLLV*EGVTIHHQHASKHKQT*AVTVN 220
Query: 211 ITHIYIEGNSCADCMANVG------LTLSSFVWLP 239
+ H+Y + N CAD ++ G +T V+LP
Sbjct: 219 VPHVYRKANQCAD*LSKKGEYSTDPMTCGIIVFLP 115
>CO980802
Length = 803
Score = 32.0 bits (71), Expect = 0.29
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -3
Query: 105 WIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAKLLGVITAINIAGE 164
+ KVN DG+ + K +C G+ D + F N+ ++ AKL G+ I A
Sbjct: 405 FFKVNVDGSYKASTAKMACRGIILDSFGRVLSCFHSNIGVCNSIWAKLWGLKHGIKPARN 226
Query: 165 NN 166
N
Sbjct: 225 MN 220
>BG725403
Length = 404
Score = 32.0 bits (71), Expect = 0.29
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 106 IKVNTDGALTKNPTKASCGGVFRD-HNNIFIGAFVQNLNTNSAFNAKLLGVITAINIA 162
+++N GA + A+CGG+F D H +G +V+ S A++ G+ + IA
Sbjct: 12 LRLNVSGAYDPSSGTATCGGIFSDKHRRFVLGFWVELGECWSIDEAEIWGIYHGMKIA 185
>AW350693
Length = 563
Score = 31.2 bits (69), Expect = 0.50
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = -3
Query: 174 TDLQLAVLAFKNLNMVPWSLRNKWLNYFEHVRSMNFLITHIYIEGNSCADCMANVG 229
T + V A N + W +RN+ +N M+FL+ +I+ E N+C + G
Sbjct: 219 TSVLCYVQASGNHRTIIWRIRNR*MNRIMLTIDMHFLVGYIFREWNTCVKILVTHG 52
>TC217031 similar to UP|Q9FQF3 (Q9FQF3) Glutathione S-transferase GST 5 ,
partial (92%)
Length = 1234
Score = 30.4 bits (67), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 235 FVWLPSLPDCIKHDYGRNRLGMHSFRF 261
F W +LP I D+ RNR +H FRF
Sbjct: 1228 FTWWKTLPSFIWEDFLRNRYVLHFFRF 1148
>TC212843
Length = 459
Score = 30.4 bits (67), Expect = 0.85
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = -2
Query: 105 WIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAF 138
WIK NTDG + P CGG F + G F
Sbjct: 194 WIK*NTDGVARRCPGPVGCGGFFGGSPSSVQGGF 93
>TC223668
Length = 866
Score = 30.0 bits (66), Expect = 1.1
Identities = 34/153 (22%), Positives = 66/153 (42%), Gaps = 5/153 (3%)
Frame = -3
Query: 94 KEVMWI--PPIPPWIKVNTDGALTKNPTKASCGGVFRDHNNIFIGAFVQNLNTNSAFNAK 151
K + W PP+ +K+N DG+ P GG+ RD ++ F ++ + ++
Sbjct: 597 KRLTWTSPPPLLNEVKLNVDGSGHYEPHVMEVGGLIRDGVGRWLFRFARHCGLGNPLLSE 418
Query: 152 LLGVITAINIAGENNWRNIWLETDLQLAVLAFKNLNMVPWSLRNKWLNYFEHVRSMNFLI 211
L + ++ W + L Q++ A + ++ S+R+ R +F +
Sbjct: 417 LFALEASLRSHIV*TWWSCLLIG--QMSR*ACMLMQILIHSIRSFM------KRDWSFSL 262
Query: 212 THIYIEGNSCADCMANVG--LTLSSFVW-LPSL 241
H+ + NS D +A G +T S+ W LP +
Sbjct: 261 CHVNTKVNSVVDFLAEWGARMTKSTLSWPLPQM 163
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,711,848
Number of Sequences: 63676
Number of extensions: 228556
Number of successful extensions: 1578
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136507.9