BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136507.8 + phase: 0
(146 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234598 similar to UP|Q9LMI5 (Q9LMI5) T2D23.4 protein, partial ... 147 2e-36
TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g6... 31 0.19
TC207157 30 0.41
TC232419 30 0.54
AW734814 30 0.54
TC230375 similar to UP|Q9SSY4 (Q9SSY4) Ethylene receptor CS-ETR2... 28 2.1
CA801851 weakly similar to GP|20466528|gb G2484-1 protein {Arabi... 27 2.7
BE023079 27 3.5
CO983023 27 4.6
CO980864 27 4.6
CF921960 27 4.6
AW201367 27 4.6
TC231732 similar to UP|Q9FHC6 (Q9FHC6) Emb|CAB83315.1, partial (4%) 26 6.0
BG510117 similar to PIR|T06818|T068 DNA topoisomerase (EC 5.99.1... 26 6.0
AI960372 26 6.0
TC229969 UP|Q8LGT9 (Q8LGT9) Phosphoglycerate mutase-like protein... 26 6.0
CO980133 26 7.8
TC212500 similar to PIR|G84860|G84860 NAM (no apical meristem)-l... 26 7.8
>TC234598 similar to UP|Q9LMI5 (Q9LMI5) T2D23.4 protein, partial (17%)
Length = 640
Score = 147 bits (371), Expect = 2e-36
Identities = 73/144 (50%), Positives = 98/144 (67%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 MRPPEKRVDYKVGDKVEVCSEDEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESEL-L 59
MRPP KRVD+ DKVE+C ++GF+GSY++AT+VS L++G YV+RY LL+DD S+ L
Sbjct: 82 MRPPRKRVDFARDDKVEICGNEDGFLGSYYQATVVSRLDNGLYVVRYDTLLEDDASQQPL 261
Query: 60 METLFPKDLRPIPPHVRNPLKFKLNQKVDVFDNDGWWVGKIASEKILMEKSCYYSVYFDY 119
ETLFPK+LRP PP V + F L Q VD FDNDGWW+G++ +K + +Y VYF
Sbjct: 262 TETLFPKELRPQPPRV-SKTDFALYQCVDAFDNDGWWLGQVTGKK----DAEHYYVYFST 426
Query: 120 CHQTIYYPCDQIRVHQELVWGDWI 143
++ I Y IRVH E G+W+
Sbjct: 427 TNEEIAYHVSAIRVHHEWSHGEWV 498
>TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g68580
{Arabidopsis thaliana;} , partial (11%)
Length = 1049
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/58 (29%), Positives = 28/58 (47%)
Frame = +2
Query: 87 VDVFDNDGWWVGKIASEKILMEKSCYYSVYFDYCHQTIYYPCDQIRVHQELVWGDWIF 144
VD + +DGWW G + + E +C+ VYF + +R Q+ V +W+F
Sbjct: 11 VDAWWHDGWWEGIVVQKD--SESNCH--VYFPGEKVVSVFGPGNLRESQDWVGNEWVF 172
>TC207157
Length = 826
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 13 GDKVEVCSEDEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRPIP 72
G+KVE+ +G + A I+S + Y ++Y S E + K +RP P
Sbjct: 192 GNKVEIRGNADGLTVEWRCARIISG-DGHTYSVQYD--CSSTTSGASTERVSRKAIRPCP 362
Query: 73 PHVRNPLKFKLNQKVDVFDNDGWWVGKI 100
P ++ N V+V++ W V +
Sbjct: 363 PLIKGIESQAANDHVEVYNAGSWRVATV 446
>TC232419
Length = 422
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/66 (30%), Positives = 35/66 (52%)
Frame = +1
Query: 11 KVGDKVEVCSEDEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRP 70
K G VEV ++EGF ++F A I++ L+ K + Y +L+ + + L E + +
Sbjct: 214 KEGLLVEVFKDEEGFKAAWFSANILT-LKDNKAYVGYTSLVAAEGAGPLKEWVSLECDGD 390
Query: 71 IPPHVR 76
PP +R
Sbjct: 391 KPPRIR 408
>AW734814
Length = 378
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -2
Query: 50 LLKDDESELLMETLFPKDLRPIPPHV 75
+L +S LL+++LFP DL PI PH+
Sbjct: 167 ILIQQKSFLLLKSLFPFDLTPIFPHI 90
>TC230375 similar to UP|Q9SSY4 (Q9SSY4) Ethylene receptor CS-ETR2, partial
(22%)
Length = 736
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
Frame = +2
Query: 99 KIASEKILMEKSCYYSVYFDYCHQT--IYYPCDQIR 132
KIASE L SC + + YCH T I+Y R
Sbjct: 215 KIASETRLCCNSCCFRIRMPYCHWTCRIFYSSHSFR 322
>CA801851 weakly similar to GP|20466528|gb G2484-1 protein {Arabidopsis
thaliana}, partial (8%)
Length = 445
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 11 KVGDKVEVCSEDEGFVGSYFEATIVSCLESGKYV 44
K G VEV ++EGF ++F A I++ + YV
Sbjct: 151 KEGLLVEVFKDEEGFKAAWFSANILTLRDDKAYV 252
>BE023079
Length = 419
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/90 (26%), Positives = 40/90 (43%), Gaps = 14/90 (15%)
Frame = +1
Query: 14 DKVEVCSEDEGFVGSYFEATIVSCLESGKYVIRY-----KNLLKDDESEL---------L 59
DK+ CSED S + +++ ESG+ I Y ++ K+ + ++ L
Sbjct: 151 DKLSRCSEDGEI--SVSKDALLAFSESGRIFIHYLSATANDICKESKRQIINVEDVFKAL 324
Query: 60 METLFPKDLRPIPPHVRNPLKFKLNQKVDV 89
ET FP+ LRP+ + K +K V
Sbjct: 325 EETEFPEFLRPLKASLEEFRKKNAGKKAAV 414
>CO983023
Length = 763
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/34 (38%), Positives = 16/34 (46%)
Frame = -2
Query: 95 WWVGKIASEKILMEKSCYYSVYFDYCHQTIYYPC 128
WW + E IL E SC + CHQ +PC
Sbjct: 513 WWFWR**WESIL-ENSCLQCLQTSLCHQQRNHPC 415
>CO980864
Length = 745
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/34 (38%), Positives = 16/34 (46%)
Frame = -1
Query: 95 WWVGKIASEKILMEKSCYYSVYFDYCHQTIYYPC 128
WW + E IL E SC + CHQ +PC
Sbjct: 466 WWFWR**WESIL-ENSCLQCLQTSLCHQQRNHPC 368
>CF921960
Length = 331
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Frame = -3
Query: 107 MEKSCYYSVYFDYCHQTIY--------YPCDQIRVHQELVWGDWIFE 145
M+ C+ Y+++ HQ + + C + R+H++ W D I E
Sbjct: 299 MKARCFLFPYYNWSHQALSLY*LNPTEFFCSEPRIHKQKFWPDPIRE 159
>AW201367
Length = 391
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/38 (34%), Positives = 24/38 (62%)
Frame = +1
Query: 44 VIRYKNLLKDDESELLMETLFPKDLRPIPPHVRNPLKF 81
VI+ +N+LK + + +++ KD P+P + NP+KF
Sbjct: 58 VIQRENILKTN-----LSSMYSKDPDPLPVCLVNPMKF 156
>TC231732 similar to UP|Q9FHC6 (Q9FHC6) Emb|CAB83315.1, partial (4%)
Length = 291
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1
Query: 108 EKSCYYSVYFDYCHQTIYYPCDQI 131
EK CY+ + F YCH+ CD++
Sbjct: 109 EKECYHFLSFGYCHK-----CDKM 165
>BG510117 similar to PIR|T06818|T068 DNA topoisomerase (EC 5.99.1.2) I -
garden pea, partial (6%)
Length = 404
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = -3
Query: 107 MEKSCYYSVYFDYCHQTIYYPCDQIRVHQEL 137
M CY+ F H T+YYP + +H L
Sbjct: 96 MGSLCYHG*SFSTQH*TVYYPHHLLNLHSNL 4
>AI960372
Length = 379
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 96 WVGKIASEKILMEKSCYYSVYFDYCHQTIYYPCDQ 130
+ G ++ M + +Y+ YC+ TI YP Q
Sbjct: 247 YAGVTPMRRLTMRRFRQRYMYYSYCYDTIRYPVPQ 351
>TC229969 UP|Q8LGT9 (Q8LGT9) Phosphoglycerate mutase-like protein, complete
Length = 1133
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +3
Query: 33 TIVSCLESGKYVIRYKNLL 51
T +SC+ G+YVI Y LL
Sbjct: 1029 TSISCVNCGRYVISYSRLL 1085
>CO980133
Length = 862
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 14 DKVEVCSEDEGFVG 27
D V +CSEDE F+G
Sbjct: 495 DLVSICSEDEAFIG 454
>TC212500 similar to PIR|G84860|G84860 NAM (no apical meristem)-like protein
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (48%)
Length = 594
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 76 RNPLKFKLNQKVDVFDNDGWWVGKIAS 102
+ PLK +L ++VD++ D W + K+ S
Sbjct: 178 KKPLKIELIKQVDIYKYDPWDLPKVNS 258
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.142 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,207,090
Number of Sequences: 63676
Number of extensions: 115916
Number of successful extensions: 689
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136507.8