BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136507.18 - phase: 1 /pseudo
(305 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211617 134 4e-32
BM525744 125 2e-29
BU545334 74 8e-14
TC234242 74 8e-14
BM892478 70 9e-13
BG839904 65 3e-11
AW761314 65 4e-11
BE057981 60 9e-10
AW781991 56 2e-08
BG882562 51 7e-07
BI497763 40 2e-06
TC210791 48 6e-06
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 47 8e-06
TC208963 47 8e-06
TC234876 similar to UP|Q7RNR5 (Q7RNR5) 60S ribosomal protein L27... 39 0.003
TC226628 similar to UP|HAT5_ARATH (Q02283) Homeobox-leucine zipp... 30 1.4
TC204981 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (71%) 30 1.4
TC214150 homologue to UP|Q9ZTV1 (Q9ZTV1) Chaperonin 60 alpha sub... 29 2.3
TC210065 29 3.0
TC204979 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (89%) 29 3.0
>TC211617
Length = 534
Score = 134 bits (338), Expect = 4e-32
Identities = 65/175 (37%), Positives = 101/175 (57%)
Frame = -1
Query: 8 CERSGSHIVPKKKPKHAGTGSRKCGCLFMISGYQSKQTKEWRLNILNGVHNHPMEPALEG 67
CERSG + KK+ T +RKCGC F I G + W + ++ G+HNH + L
Sbjct: 531 CERSGKYKCRKKEFVRRDTCTRKCGCPFKIRGKPMHGGEGWTVKLICGIHNHELAKTLVE 352
Query: 68 HILAGRLKEDDKKIVRDLTKNKMLPRNILIHLKNQRPHCMTNVKQVYNERQQIWKANRGD 127
H AGRL +D+K I+ D+TK+ + PRNI + LK + T +KQ+YN R + RGD
Sbjct: 351 HPYAGRLTDDEKNIIADMTKSNVKPRNIQLTLKEHNTNSCTTIKQIYNARSAYHSSIRGD 172
Query: 128 KKPLQYLISKLEEHKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDST 182
+Q+L+ L+ +Y ++ R + + + + D+FW HP ++KL N V ++DST
Sbjct: 171 DTEMQHLMRLLKRDQYIHWHRLK-DQDVVRDLFWCHPDAVKLCNTCHLVFLIDST 10
>BM525744
Length = 411
Score = 125 bits (315), Expect = 2e-29
Identities = 60/136 (44%), Positives = 91/136 (66%)
Frame = +3
Query: 81 IVRDLTKNKMLPRNILIHLKNQRPHCMTNVKQVYNERQQIWKANRGDKKPLQYLISKLEE 140
+V D+TK + PRNIL+ LK+ T ++ +YN RQ + +G + +Q+L+ LE
Sbjct: 6 LVIDMTKKMVEPRNILLTLKDHNND--TTIRHIYNARQAYRSSQKGPRTEMQHLLKLLEH 179
Query: 141 HKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRMPMFEVVGVTS 200
+Y +SR +S+ I DIFWAHP +IKL +F TVL +D+TYK N Y++P+ E+VGVTS
Sbjct: 180 DQYVCWSRKVDDSDAIRDIFWAHPDAIKLLGSFHTVLFLDNTYKVNRYQLPLLEIVGVTS 359
Query: 201 TDLTYSVGFGFMTHEK 216
T+LT+SV F +M ++
Sbjct: 360 TELTFSVAFAYMESDE 407
>BU545334
Length = 556
Score = 73.9 bits (180), Expect = 8e-14
Identities = 37/93 (39%), Positives = 54/93 (57%)
Frame = -1
Query: 8 CERSGSHIVPKKKPKHAGTGSRKCGCLFMISGYQSKQTKEWRLNILNGVHNHPMEPALEG 67
CER+G + K GSRK GC F + G + W + ++ G+HNH + +L
Sbjct: 292 CERNGQYKCRNKXXVIRAIGSRKYGCPFKLRGKPVIGGQGWMMKLICGIHNHELAKSLVE 113
Query: 68 HILAGRLKEDDKKIVRDLTKNKMLPRNILIHLK 100
H AGRL +D+K I+ D+TK+ + PRNIL+ LK
Sbjct: 112 HPYAGRLTKDEKTIIVDITKSMVKPRNILLILK 14
>TC234242
Length = 478
Score = 73.9 bits (180), Expect = 8e-14
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Frame = +3
Query: 131 LQYLISKLEEHKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRM 190
+Q+L+ LE +Y ++ R + + + + DIFW HP S+KL N V ++DSTY+TN YR+
Sbjct: 18 MQHLMKFLERDQYIHWHRIK-DEDVVRDIFWCHPDSVKLVNACNLVFLIDSTYRTNRYRL 194
Query: 191 PM-----FEVVGVTSTDLTYSVGFGFMTHEKEEN 219
P+ + VG+T T +T+S F ++ E+ N
Sbjct: 195 PLLDFVVLDFVGMTPTGMTFSASFAYVEGERVNN 296
>BM892478
Length = 429
Score = 70.5 bits (171), Expect = 9e-13
Identities = 36/131 (27%), Positives = 72/131 (54%)
Frame = +3
Query: 131 LQYLISKLEEHKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRM 190
L+Y S+ E +Y+ ++++ +IFWA S ++F VLV+D++Y+ +Y +
Sbjct: 33 LEYFQSRQAEDTGFFYAM-EVDNGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLV 209
Query: 191 PMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLKMLRKLLSSKMNMPKVIVTDRDMSLM 250
P VGV +G + E EE+F W+ + + +S + +P ++ D+D+++
Sbjct: 210 PFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGR--LPLTVIADQDIAIQ 383
Query: 251 KAVAHVFPESY 261
+A+A VFP ++
Sbjct: 384 RAIAKVFPVTH 416
>BG839904
Length = 712
Score = 65.5 bits (158), Expect = 3e-11
Identities = 38/112 (33%), Positives = 58/112 (50%), Gaps = 2/112 (1%)
Frame = -3
Query: 8 CERSGSHIVP-KKKPKHAGTGSRKCGCLFMISGYQSKQTKEWRLNILNGVHNHPMEPALE 66
C+RSG + P K + +G+RKC C F + G K+ + W + ++ G HNH + L
Sbjct: 338 CDRSGKYRGPYKNELSRKVSGTRKCECPFKLKGKALKKAEGWIVKVMCGCHNHDLXETLV 159
Query: 67 GHILAGRLKEDDKKIVRDLTK-NKMLPRNILIHLKNQRPHCMTNVKQVYNER 117
GH AGRL ++K R K + R+ + H K +T +KQ+YN R
Sbjct: 158 GHPYAGRLSAEEKSFGRCFDKEHDEAXRHSIDH*KIITWVTVTTIKQIYNAR 3
>AW761314
Length = 331
Score = 65.1 bits (157), Expect = 4e-11
Identities = 32/94 (34%), Positives = 53/94 (56%)
Frame = +1
Query: 55 GVHNHPMEPALEGHILAGRLKEDDKKIVRDLTKNKMLPRNILIHLKNQRPHCMTNVKQVY 114
G NH + +L H A RL +D+ I+ ++TK+ + P+NIL+ LK + T +KQ+Y
Sbjct: 49 GSDNHELVKSLVRHPYASRLTKDENIIITNMTKSMVKPKNILLTLKEHNVNSYTAIKQIY 228
Query: 115 NERQQIWKANRGDKKPLQYLISKLEEHKYTYYSR 148
N R + RG +Q L+ LE+ +Y ++ R
Sbjct: 229 NARSAYCSSIRGSDTKMQQLMKLLEQDQYIHWHR 330
>BE057981
Length = 268
Score = 60.5 bits (145), Expect = 9e-10
Identities = 28/81 (34%), Positives = 48/81 (58%)
Frame = +2
Query: 139 EEHKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRMPMFEVVGV 198
E +Y ++ R + E + D+FW H ++KL N V ++++ YKTN YR+ + + GV
Sbjct: 14 ERDQYIHWHRLKDEF-VVRDLFWCHLDAVKLCNACHLVFLINNAYKTNRYRLLLLDFAGV 190
Query: 199 TSTDLTYSVGFGFMTHEKEEN 219
T +T+SVGF ++ E+ N
Sbjct: 191 TPARMTFSVGFAYLEGERVNN 253
>AW781991
Length = 419
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/95 (30%), Positives = 46/95 (47%)
Frame = +3
Query: 131 LQYLISKLEEHKYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRM 190
L YL E+ +Y+ E +I ++FWA P + + F + D+TY++N YR+
Sbjct: 129 LDYLRQMHAENPNFFYAVQGDEDQSITNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRL 308
Query: 191 PMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLK 225
P GV G F+ +E E +FVW+ K
Sbjct: 309 PFAFFTGVNHHGQPVLFGCAFLINESEASFVWLFK 413
>BG882562
Length = 416
Score = 50.8 bits (120), Expect = 7e-07
Identities = 26/112 (23%), Positives = 53/112 (47%)
Frame = +3
Query: 145 YYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNIYRMPMFEVVGVTSTDLT 204
+Y + + ++FW S ++ F V+ DST +N Y +P+ VGV +
Sbjct: 87 FYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKS 266
Query: 205 YSVGFGFMTHEKEENFVWVLKMLRKLLSSKMNMPKVIVTDRDMSLMKAVAHV 256
+G G + E E ++W+ + ++ + P+ I+T+ ++ A+A V
Sbjct: 267 VLLGCGLLADETFETYIWLFRAWLTCMTGR--PPQTIITNXCKAMQSAIAEV 416
>BI497763
Length = 421
Score = 39.7 bits (91), Expect(2) = 2e-06
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 46 KEWRLNILNGVHNHPMEPALEGHILAGRLKEDDKKIVRDLTK 87
K W + +L G HNH + +L H GRL +D+K I+ ++TK
Sbjct: 41 KGWMVKLLCGSHNHELTKSLVEHPYVGRLTKDEKTIIVNMTK 166
Score = 29.6 bits (65), Expect(2) = 2e-06
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 92 PRNILIHLKNQRPHCMTNVKQVYNER 117
PRNIL+ LK + T ++Q+YN R
Sbjct: 162 PRNILLMLKEYNANGCTTIRQIYNAR 239
>TC210791
Length = 456
Score = 47.8 bits (112), Expect = 6e-06
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +1
Query: 228 RKLLSSKMNMPKVIVTDRDMSLMKAVAHVFPESYAMNCYFHVQANVKQRCVLD 280
R L+ MP VI+T RD++LM AV VFP S + C FH+ NVK + +D
Sbjct: 1 RGLIFKDNEMPPVIITVRDIALMDAVQVVFPSSSNLLCRFHISKNVKAKSQVD 159
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 47.4 bits (111), Expect = 8e-06
Identities = 26/93 (27%), Positives = 46/93 (48%)
Frame = +1
Query: 177 LVMDSTYKTNIYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLKMLRKLLSSKMN 236
+V D+TY+ Y M + +GV + +T + E ++F W LK + K
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGK-- 183
Query: 237 MPKVIVTDRDMSLMKAVAHVFPESYAMNCYFHV 269
P+ I+TD +M L +A+A P++ C +H+
Sbjct: 184 APQTILTDHNMWLKEAIAVELPQTKHAFCIWHI 282
>TC208963
Length = 1163
Score = 47.4 bits (111), Expect = 8e-06
Identities = 22/42 (52%), Positives = 29/42 (68%)
Frame = +1
Query: 236 NMPKVIVTDRDMSLMKAVAHVFPESYAMNCYFHVQANVKQRC 277
+MP+VIVT D++LM AV VFP S + C FH+ NVK +C
Sbjct: 16 DMPQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKC 141
>TC234876 similar to UP|Q7RNR5 (Q7RNR5) 60S ribosomal protein L27 homolog,
partial (15%)
Length = 920
Score = 38.9 bits (89), Expect = 0.003
Identities = 19/60 (31%), Positives = 29/60 (47%)
Frame = -3
Query: 28 SRKCGCLFMISGYQSKQTKEWRLNILNGVHNHPMEPALEGHILAGRLKEDDKKIVRDLTK 87
+RKCGCLF + + W ++ HNH + L H RL ++K I+ D+ K
Sbjct: 603 NRKCGCLFKLQVKPVLGGEGWMKKLIRESHNHALAKLLVRHPYVDRLTINEKIIIGDMIK 424
>TC226628 similar to UP|HAT5_ARATH (Q02283) Homeobox-leucine zipper protein
HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1), partial
(20%)
Length = 767
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 57 HNHPMEPALEGHILAGRLKEDDKKIVRDLTK--NKMLPRNILIH------LKNQRPHCM 107
HN P +P G + GRL E ++ DL + + +LPR ++ KN RP M
Sbjct: 640 HNTPHKPVSSGEVKKGRLFEASSMLIIDLPRKASSVLPRKSMLFPREAEASKNIRPDSM 464
>TC204981 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (71%)
Length = 774
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 18/66 (27%)
Frame = -2
Query: 173 FPTVLVMDSTYKTNIYRM---------PMFEVVGVTSTDLTYS---------VGFGFMTH 214
FPT++++ S KT Y+M PM E +G T+T L+ + VG H
Sbjct: 434 FPTLMLLTSPLKTTPYQMDDPLPS*TSPMTEALGATNTSLSTTGALSNMFIRVGCVETKH 255
Query: 215 EKEENF 220
KE+++
Sbjct: 254 NKEDDY 237
>TC214150 homologue to UP|Q9ZTV1 (Q9ZTV1) Chaperonin 60 alpha subunit, partial
(98%)
Length = 2134
Score = 29.3 bits (64), Expect = 2.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Frame = -1
Query: 151 LESNTIEDIFWAHPTSIKLFNN--FPTVLVMDSTYKTNIYRMPMFEVVGVTSTDLTY--- 205
LESN I + PT++KLF N F + +TY +I+ +F V + + T
Sbjct: 1972 LESNIIISFLSSSPTNLKLFTNTFFFPIEQNSNTYALSIFCTKLFFAVALQPKNQTVRPC 1793
Query: 206 ------SVGFGFMT 213
++G GF T
Sbjct: 1792 GAPATGALGLGFST 1751
>TC210065
Length = 393
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/87 (25%), Positives = 33/87 (37%)
Frame = -2
Query: 18 KKKPKHAGTGSRKCGCLFMISGYQSKQTKEWRLNILNGVHNHPMEPALEGHILAGRLKED 77
K K KH + + C CL + ++ + + + I N VH H L H L G +
Sbjct: 296 KDKAKHKFSLNTLCCCLNIKMDTKNNKEQHKKQTINNSVHKHGCNSGLHVHKLKGCI--- 126
Query: 78 DKKIVRDLTKNKMLPRNILIHLKNQRP 104
LPR + H + Q P
Sbjct: 125 -------------LPRQLKDHSRAQEP 84
>TC204979 similar to UP|Q9LN36 (Q9LN36) F18O14.34, partial (89%)
Length = 1243
Score = 28.9 bits (63), Expect = 3.0
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 9/41 (21%)
Frame = -2
Query: 173 FPTVLVMDSTYKTNIYRM---------PMFEVVGVTSTDLT 204
FPT++++ S KT Y+M PM E +G T+T L+
Sbjct: 339 FPTLMLLTSPLKTTPYQMDDPLPS*TSPMTEALGATNTSLS 217
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,645,302
Number of Sequences: 63676
Number of extensions: 201877
Number of successful extensions: 1072
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of query: 305
length of database: 12,639,632
effective HSP length: 97
effective length of query: 208
effective length of database: 6,463,060
effective search space: 1344316480
effective search space used: 1344316480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC136507.18