BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136506.7 - phase: 0 /pseudo
(1021 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 254 1e-67
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 251 9e-67
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 183 4e-46
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 134 2e-31
CO982036 119 9e-27
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 92 9e-27
TC232995 115 7e-26
BM086359 111 1e-24
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 111 1e-24
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 111 2e-24
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 110 3e-24
BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sat... 106 5e-23
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 69 3e-22
BU764568 81 4e-22
BE211208 102 7e-22
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 102 1e-21
BM143109 97 4e-20
AW185460 94 2e-19
CO983516 94 4e-19
CA853145 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 82 8e-18
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 254 bits (650), Expect = 1e-67
Identities = 135/357 (37%), Positives = 210/357 (58%), Gaps = 1/357 (0%)
Frame = +1
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+G+A I + L+Q+DV +AFL+G L+E+ Y+ G V + P+ V +L K+LYGLKQA
Sbjct: 3487 LGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAP 3666
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WYE+LT L GY++ D +LF K+ + +L I +YVDDI+ G S +
Sbjct: 3667 RAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQ 3846
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
+ F++ +G L YFLGL+V + I L Q KY +++ G+ + TP+ +K
Sbjct: 3847 MQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLK 4026
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L D + D S YR ++G L+YL +RPDIT+ +++ + P +H N R++KY
Sbjct: 4027 LSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKY 4206
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
+ G+ GI + S + GY +ADWAG D R+S S CF+LG +LISW +KK +S
Sbjct: 4207 VNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVS 4386
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
++EAEY A S+ +L W+ +L++ ++ ++ LYCDN S ++I+ NP HSR
Sbjct: 4387 LSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDNMSAINISKNPVQHSR 4554
Score = 111 bits (277), Expect = 2e-24
Identities = 67/205 (32%), Positives = 101/205 (48%), Gaps = 9/205 (4%)
Frame = +1
Query: 1 IWHFRLGHLSNQRLSKMHQL-----YPSISVDNKATCDICPFAKQRKLPYN-FSHSIAKS 54
IWH R GHL + + K+ P++ ++ C C KQ K+ + H
Sbjct: 2074 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSR 2253
Query: 55 KFELLYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTH 114
ELL+ D+ GP+ S+ G +Y +VDDFSRF WV ++ K++ K +
Sbjct: 2254 VLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQRE 2433
Query: 115 HHITPKFIRSDNGPEF---LLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARAL 171
K IRSD+G EF EF S+GI H+ S TP+QN VERK++ + AR +
Sbjct: 2434 KDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVM 2613
Query: 172 PFQFKLPNIFWSYAVLYSVFLINRV 196
+LP W+ A+ + ++ NRV
Sbjct: 2614 LHAKELPYNLWAEAMNTACYIHNRV 2688
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 251 bits (642), Expect = 9e-67
Identities = 133/357 (37%), Positives = 210/357 (58%), Gaps = 1/357 (0%)
Frame = +1
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPGVTT-SKPNQVCKLSKSLYGLKQAS 652
+G+A I + L+Q+DV +AFL+G L+E+VY+ G + P+ V +L K+LYGLKQA
Sbjct: 3484 LGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAP 3663
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNV 712
R WYE+LT L GY++ D +LF K+ + +L I +YVDDI+ G S +
Sbjct: 3664 RAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQ 3843
Query: 713 INQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIK 772
+ F++ +G L YFLGL+V + I L Q +Y +++ G+ + TP+ +K
Sbjct: 3844 MQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLK 4023
Query: 773 LHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKY 832
L D + D S YR ++G L+YL +RPDIT+ +++ + P +H R++KY
Sbjct: 4024 LSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKY 4203
Query: 833 LKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTIS 892
+ G+ GI + S+ + GY +ADWAG D R+S S CF+LG +LISW +KK +S
Sbjct: 4204 VNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVS 4383
Query: 893 RFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
++EAEY A S+ +L W+ +L++ ++ ++ LYCDN S ++I+ NP HSR
Sbjct: 4384 LSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDNMSAINISKNPVQHSR 4551
Score = 112 bits (280), Expect = 8e-25
Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 9/205 (4%)
Frame = +1
Query: 1 IWHFRLGHLSNQRLSKMHQL-----YPSISVDNKATCDICPFAKQRKLPYN-FSHSIAKS 54
IWH R GHL + + K+ P++ ++ C C KQ K+ + H
Sbjct: 2071 IWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSR 2250
Query: 55 KFELLYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTH 114
ELL+ D+ GP+ S+ G +Y +VDDFSRF WV ++ K+E K +
Sbjct: 2251 VLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQRE 2430
Query: 115 HHITPKFIRSDNGPEF---LLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARAL 171
K IRSD+G EF EF S+GI H+ S TP+QN VERK++ + AR +
Sbjct: 2431 KDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVM 2610
Query: 172 PFQFKLPNIFWSYAVLYSVFLINRV 196
+LP W+ A+ + ++ NRV
Sbjct: 2611 LHAKELPYNLWAEAMNTACYIHNRV 2685
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 183 bits (464), Expect = 4e-46
Identities = 95/140 (67%), Positives = 109/140 (77%)
Frame = -2
Query: 643 KSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDS 702
KSLYGLKQASRKWYEKLT LL+ GY Q+ SD SLFT + T LLVYVDDIILAGDS
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 703 LIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKP 762
+ E IKNV++ AFKIK+LG LKYFLGLEVAHS+ GI++ QRKYCLDLL D GLLG KP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 763 VTTPSDPSIKLHNDSSPLFA 782
+TP D SIKLH+ + +A
Sbjct: 60 ASTPLDTSIKLHSAAGTPYA 1
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
(16%)
Length = 662
Score = 134 bits (338), Expect = 2e-31
Identities = 66/116 (56%), Positives = 85/116 (72%), Gaps = 2/116 (1%)
Frame = +3
Query: 825 AALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWR 884
AA RV+KYLKG P +G+ F R S + I G+++ADWA C D+ +SI+ CFFLG SLISW+
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 885 TKK*PTISR--FSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVM 938
KK T+SR SSEA+YRA+ S TCELQWL YLL+DLH+ ++YCDNQS +
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV-----TLIYCDNQSAL 350
>CO982036
Length = 674
Score = 119 bits (297), Expect = 9e-27
Identities = 75/210 (35%), Positives = 112/210 (52%), Gaps = 3/210 (1%)
Frame = -2
Query: 681 KASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGI 740
K + LLVYVD II+ G S I + + +N +F +K LG L YF+ +EV S +
Sbjct: 670 KTHILTVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVK-SMPDL 497
Query: 741 SLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTT 800
R ++ ++P+++P + KL S LF+ + YR +VG L Y
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVI 317
Query: 801 RPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGI-FFPRSSS--LHIQGYTNA 857
RP+I+F ++ QF+S P +H+ R+++YLKGS G+ P SS L I+G+ +A
Sbjct: 316 RPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDA 137
Query: 858 DWAGCKDTRRSISCRCFFLGQSLISWRTKK 887
DWA D +RS S FLG +LISW K
Sbjct: 136 DWASAVDDKRSTSGAAVFLGPNLISWWXXK 47
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 92.0 bits (227), Expect(2) = 9e-27
Identities = 55/183 (30%), Positives = 87/183 (47%)
Frame = +3
Query: 688 ILLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKY 747
I+ +YVDDII S ++ F+ G LK+ LGL++ GI + Q KY
Sbjct: 492 IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671
Query: 748 CLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFI 807
L + +KP+ TP S + D Y ++ L YL ++RPDI F+
Sbjct: 672 TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851
Query: 808 TQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRR 867
++F S P +H A R+++YL G+ ++F + S + GY + +AG K R+
Sbjct: 852 VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031
Query: 868 SIS 870
S S
Sbjct: 1032STS 1040
Score = 47.8 bits (112), Expect(2) = 9e-27
Identities = 21/48 (43%), Positives = 31/48 (63%)
Frame = +2
Query: 640 KLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLT 687
K +YGLKQA R WYE+L+ L+SNG+ + +D +LF K +L+
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLS 490
>TC232995
Length = 1009
Score = 115 bits (289), Expect = 7e-26
Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +2
Query: 628 PGVTTS-KPNQVCKLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSL 686
PG S KPN V KL K+LYGLKQA R WYE+L+ L+ + + D +LF K+ +
Sbjct: 14 PGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHNDI 193
Query: 687 TILLVYVDDIIL--AGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQ 744
++ +YVDDII DSL + + + F++ +G LKYFLGL++ +Q GI + Q
Sbjct: 194 LLVQIYVDDIIFGSTNDSLCKEFSLD--MQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQ 367
Query: 745 RKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLI 795
KYC +L+ G+ +K ++TP + L D S D+ YR +G ++
Sbjct: 368 SKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>BM086359
Length = 427
Score = 111 bits (278), Expect = 1e-24
Identities = 58/142 (40%), Positives = 81/142 (56%)
Frame = +1
Query: 729 LGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYR 788
LG++VA S GI + Q KY LD+L + G+L P TP DP++KL + D
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 789 RLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIFFPRSSS 848
LVGRL YL TR DITF LSQFL PT + +NA +R+++Y+K +PG G+ + +
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360
Query: 849 LHIQGYTNADWAGCKDTRRSIS 870
+ Y +ADW G + S S
Sbjct: 361 GKVVCYFDADWPGSPSDKSSTS 426
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (30%)
Length = 687
Score = 111 bits (278), Expect = 1e-24
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Frame = +2
Query: 851 IQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAEYRAMASATCEL 910
+ GY +ADWAGC RRS S C F+G +L+SW++KK ++R S+EAEYR+MA TCEL
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 911 QWLLYLLRDLHIRCVKL-LVLYCDNQSVMHIAANPDFHSR 949
W+ L++L C +L + LYCDNQ+ +HIA+NP FH R
Sbjct: 197 MWIKQFLQELRF-CEELQMKLYCDNQAALHIASNPVFHER 313
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 111 bits (277), Expect = 2e-24
Identities = 56/118 (47%), Positives = 77/118 (64%)
Frame = +2
Query: 689 LLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYC 748
L+VYVDDI++ +I +K + F+ KDL LKYFLG+EVA S G+ + QRKY
Sbjct: 65 LMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIEVAQSGDGVVISQRKYA 244
Query: 749 LDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITF 806
LD+L + G+ + V +P DP++KL S ++ D YRRLVG+LIYL TRPDI+F
Sbjct: 245 LDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRRLVGKLIYLTITRPDISF 418
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
partial (7%)
Length = 804
Score = 110 bits (275), Expect = 3e-24
Identities = 58/170 (34%), Positives = 97/170 (56%), Gaps = 3/170 (1%)
Frame = +1
Query: 783 DVSAYRRLVGRLIYLNTTRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIF 842
DV+ +RRL+G L YL +RP+I F +S+F+ +P +H AA RV++ +KG+ G G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 843 FP---RSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAE 899
FP +S + GYT++DW + +S F + ++ +KK I+ + EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 900 YRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
Y A + C+ W++ LL +L +R K + L DN+S +++A +P H R
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGR 519
>BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 327
Score = 106 bits (265), Expect = 5e-23
Identities = 52/107 (48%), Positives = 71/107 (65%)
Frame = +2
Query: 700 GDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLGLLG 759
G+ +I +K + F+ KDLG LKYFLG+EVA S + + QRKY LD+L + G+
Sbjct: 5 GNDATKIVQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGVDVVISQRKYALDILEETGMQN 184
Query: 760 SKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITF 806
+PV +P DP++KL D S ++ D YRRLVG+LIYL TRPDI+F
Sbjct: 185 CRPVDSPMDPNLKLMADQSEIYHDPERYRRLVGKLIYLTITRPDISF 325
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 68.9 bits (167), Expect(2) = 3e-22
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +2
Query: 689 LLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYC 748
L+VYVDDI++ G+ +IA +K + F+ KDLG +YFLG+EVA S+ GI + QRKY
Sbjct: 41 LMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGIIISQRKYA 220
Query: 749 LDLL 752
LD+L
Sbjct: 221 LDIL 232
Score = 55.8 bits (133), Expect(2) = 3e-22
Identities = 26/67 (38%), Positives = 41/67 (60%)
Frame = +1
Query: 756 GLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRPDITFITQQLSQFL 815
G+ +P+ + DP+ KL + ++D YR LVG+LIYL TRP+I+F+ +SQF+
Sbjct: 232 GMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVVSQFM 411
Query: 816 SKPTHTH 822
P + H
Sbjct: 412 QSPHNDH 432
>BU764568
Length = 420
Score = 81.3 bits (199), Expect(2) = 4e-22
Identities = 39/77 (50%), Positives = 52/77 (66%)
Frame = +3
Query: 873 CFFLGQSLISWRTKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYC 932
C +G +LISW++KK +++ S+EAEYRAMA TCEL WL LL +L + L C
Sbjct: 177 CVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMTLIC 356
Query: 933 DNQSVMHIAANPDFHSR 949
DNQ+ +HIA+NP FH R
Sbjct: 357 DNQAALHIASNPIFH*R 407
Score = 43.1 bits (100), Expect(2) = 4e-22
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 812 SQFLSKPTHTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTR 866
SQFL+ P H+NA ++K K +PG+G+ + I GY++AD G R
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDR 165
>BE211208
Length = 413
Score = 102 bits (255), Expect = 7e-22
Identities = 55/135 (40%), Positives = 81/135 (59%), Gaps = 1/135 (0%)
Frame = +2
Query: 681 KASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSG- 739
K +L LLVYVDDII+ G S I + + +N F +K LG L YFLG+EV H+ +G
Sbjct: 8 KKDRNLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGS 187
Query: 740 ISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNT 799
+ L Q KY DLLH + +KP+++P +++L + L +D + YR +VG L Y
Sbjct: 188 VLLTQSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTI 367
Query: 800 TRPDITFITQQLSQF 814
TRP+I+F ++ QF
Sbjct: 368 TRPEISFAANKVCQF 412
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 102 bits (253), Expect = 1e-21
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Frame = +2
Query: 3 HFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELLYFD 62
H RLGH LSK+ + PS+ C+ C K + S S F +++ D
Sbjct: 317 HERLGH---PHLSKLKIMVPSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXD 487
Query: 63 IWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVSLPVKIFVQIIDTHHHITPKFI 122
IWGP +S+ ++YF+T +D+FS+ V L+K ++E+ L V I T T K +
Sbjct: 488 IWGPNRVSSM-SYRYFVTFIDEFSQCTRVFLMKERSEI-LSFLTSVNKIKTQFGKTIKIL 661
Query: 123 RSDNGPEF---LLLEFYASKGIIHQKSCVETPEQNARVERKHQHILNVARAL 171
RSDN E+ ++ F +++GI+HQ SC TP+QN ERK++H++ AR L
Sbjct: 662 RSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTL 817
>BM143109
Length = 415
Score = 97.1 bits (240), Expect = 4e-20
Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Frame = +1
Query: 632 TSKPNQVCKLSKSLYGLKQASRKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLV 691
+ KPN V KL K LYGLKQA R WYE L+ L+ G+ + D +LF K + ++ +
Sbjct: 25 SEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLNDILLVQI 204
Query: 692 YVDDIIL--AGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCL 749
YVDDII DSL + F +++ N+ F++ + L +FLGL++ +++GI + Q KYC
Sbjct: 205 YVDDIIFGSTNDSLCK-KFSQDMQNE-FEMSMMRELNFFLGLQIKQTKNGIFISQSKYCK 378
Query: 750 DLLHDLGLLGSK 761
DL+H G+ K
Sbjct: 379 DLIHRFGMENDK 414
>AW185460
Length = 411
Score = 94.4 bits (233), Expect = 2e-19
Identities = 42/105 (40%), Positives = 68/105 (64%)
Frame = +2
Query: 800 TRPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADW 859
TRPDI + T LS+F+ P+ H+ A R+++YL+G+ GI++ ++ + GYT++DW
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSDW 271
Query: 860 AGCKDTRRSISCRCFFLGQSLISWRTKK*PTISRFSSEAEYRAMA 904
AG D +S S F LG + SW +KK T+++ ++EAEY A+A
Sbjct: 272 AGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>CO983516
Length = 724
Score = 93.6 bits (231), Expect = 4e-19
Identities = 48/105 (45%), Positives = 72/105 (67%), Gaps = 1/105 (0%)
Frame = +2
Query: 594 IGLASINHWFLHQLDVNNAFLHGDLHEDVYMTVLPG-VTTSKPNQVCKLSKSLYGLKQAS 652
+G+A I + L+Q+DV +AFL+G L+E+VY+ G + + P+ V +L K+LYGLKQA
Sbjct: 404 LGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVYRLKKALYGLKQAP 583
Query: 653 RKWYEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDII 697
R WYE+LT LL GY++ D +LF K+ + +L I +YVDDI+
Sbjct: 584 RAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIV 718
>CA853145 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (29%)
Length = 563
Score = 81.6 bits (200), Expect(2) = 8e-18
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +3
Query: 697 ILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGISLCQRKYCLDLLHDLG 756
++ D I +K+ + Q F+ KDLG LKYFLG+EVA S++GI++CQRKY LD+L D G
Sbjct: 12 VITRDDHRGIRDLKSHLFQHFQTKDLGQLKYFLGIEVAQSKTGIAICQRKYALDILKDTG 191
Query: 757 LLGSKPVTTPSDPSIK 772
+ KPV TP DP+ K
Sbjct: 192 MQNCKPVDTPMDPNTK 239
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/42 (54%), Positives = 32/42 (75%)
Frame = +2
Query: 879 SLISWRTKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDL 920
+LISWR+KK* T++R+S+EA Y +M+ TC L WL LL +L
Sbjct: 422 NLISWRSKK*NTVARYSAEA*Y*SMSVTTCGLVWLKQLLSEL 547
Score = 28.1 bits (61), Expect(2) = 8e-18
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 781 FADVSAYRRLVGRLIYLNTTRPDITFITQQL 811
F+D YRRLVG+L YL TR D+ + Q +
Sbjct: 266 FSDPGRYRRLVGKLNYL--TRLDLIYPLQSV 352
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.340 0.149 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,931,903
Number of Sequences: 63676
Number of extensions: 912410
Number of successful extensions: 12437
Number of sequences better than 10.0: 308
Number of HSP's better than 10.0 without gapping: 10847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11764
length of query: 1021
length of database: 12,639,632
effective HSP length: 107
effective length of query: 914
effective length of database: 5,826,300
effective search space: 5325238200
effective search space used: 5325238200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC136506.7