TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136506.11 - phase: 0 /pseudo
         (1043 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222549 weakly similar to UP|Q6YXW5 (Q6YXW5) Cyclin-like protei...   132  6e-31
TC223842 weakly similar to GB|AAQ89612.1|37201994|BT010590 At5g2...    78  2e-14
TC221577 similar to UP|Q6YXW5 (Q6YXW5) Cyclin-like protein, part...    55  2e-07
CD408859 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {...    55  2e-07
BM094146 similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabido...    54  4e-07
BU964428 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {...    41  0.002
BE800242                                                               37  0.059
BM528154                                                               35  0.17
BI973172 similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabido...    34  0.38
BG790858 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {...    32  1.5

>TC222549 weakly similar to UP|Q6YXW5 (Q6YXW5) Cyclin-like protein, partial
           (3%)
          Length = 388

 Score =  132 bits (333), Expect = 6e-31
 Identities = 79/127 (62%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
 Frame = +2

Query: 846 GCPVIS*YNR--IPVWTKG**TF*YG*CSIIYY***HSSFWFGKPN*Y*CATTAFRKS*P 903
           G PVI   NR  +PVWTK  *T *YG*  IIYY* *HS+ WFG+P+*+*   TA  KS P
Sbjct: 8   GSPVICRDNRKYVPVWTKRR*TS*YG*YFIIYY*R*HSTLWFGEPS*F*FNATALTKSKP 187

Query: 904 DNC**YFGFSCGDNTSCRKDFCFNTF*HAI*RNGSPL*EPPRRKATEDFHIHGCPIITCQ 963
             C**+FGFS GDNTS R DF FNT *HA+  NGSPL* PPR KA ED H HG P     
Sbjct: 188 AEC**HFGFSFGDNTSSRTDFYFNTV*HALQGNGSPL*GPPRGKAAEDVHFHGYPSNARI 367

Query: 964 FIQDSSS 970
           FI DS S
Sbjct: 368 FI*DSCS 388


>TC223842 weakly similar to GB|AAQ89612.1|37201994|BT010590 At5g26850
           {Arabidopsis thaliana;} , partial (8%)
          Length = 911

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 37/81 (45%), Positives = 53/81 (64%)
 Frame = +2

Query: 127 SRQDEVQILGCQTLFDFVNNQRDGTYMFNLDSFILKLCHLAQQVGDDGKVEHLRASGLQV 186
           S+ + +Q LGCQ L  F+  Q D TY  N++  + K+C L+++ G+  +   L AS LQ 
Sbjct: 38  SKDETIQTLGCQCLSKFIYCQVDATYTHNIEKLVPKVCMLSREHGEACEKRCLSASSLQC 217

Query: 187 LSSMVWFMGEFTHISVEFDNV 207
           LS+MVWFM EF+HI V+FD V
Sbjct: 218 LSAMVWFMAEFSHIFVDFDEV 280


>TC221577 similar to UP|Q6YXW5 (Q6YXW5) Cyclin-like protein, partial (13%)
          Length = 775

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 35/111 (31%), Positives = 60/111 (53%)
 Frame = +2

Query: 423 CRSCSRYHGRVVRKHV*YYSYGKNLDCCSL*NFSNSCIYTEFVVSEQGIP*GIISSVTPG 482
           CR+ S + G  VR+++ Y  + +N + C L N   + +++  ++S++G P*  +SS+ PG
Sbjct: 275 CRTHS*FDGCGVREYLKYSHHSRNNNLCCLSNCKVNHVHS*CIISQKGFP*CFVSSIAPG 454

Query: 483 NGPCRP*NQGGCTPHIFSCSCAIVSLSSTFIFKSPLGKGNRYSKNALEKCL 533
           +G   P*N    T H+F  + AI    S F   SP+   N+Y     ++ L
Sbjct: 455 DGSS*P*NTSWSTQHLFFSTYAI----SIF---SPVRPKNKYFSEGTKRKL 586


>CD408859 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (4%)
          Length = 464

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = -3

Query: 70  KITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQM 109
           +I   LE RCYKEL+ EN+ + K+V+CIY+K L SC++QM
Sbjct: 330 RIVQALEPRCYKELQNENFISTKIVMCIYKKFLFSCKEQM 211


>BM094146 similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabidopsis
          thaliana}, partial (6%)
          Length = 398

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 24/42 (57%), Positives = 28/42 (66%)
 Frame = +3

Query: 37 LADIFPRTPEEEPNDRKISKLCEYASKNPLRVPKITSYLEQR 78
          L   FPR   E PNDR I KLC+Y ++NPL +PKI   LEQR
Sbjct: 27 LLTFFPRNQVEVPNDRSIGKLCDYTARNPLCIPKIVQALEQR 152



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/95 (31%), Positives = 47/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 29  PIKRYKKLLADIFPRTPEEEPNDRKISKLC-EYASKNPLRVPKITSYLEQRCYKELRTEN 87
           P+KRYKKL+ADIFP  P       K  K+   Y  K         S++  +       + 
Sbjct: 2   PVKRYKKLIADIFPS*PGGSAK**KHWKIM*LYCQK---------SFMHPKDCASP*AKV 154

Query: 88  YQAVKVVICIYRKLLVSCRDQMPLFASSLLSIIQI 122
             + K+V+CIY+K L SC++QM +    +  ++ I
Sbjct: 155 ITSTKIVMCIYKKFLFSCKEQM*VHIYLIFKLVYI 259


>BU964428 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (10%)
          Length = 253

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +1

Query: 259 CYEPWILVKSLYTKYG*VSQGRYNCTTCPGILVPLF**YQSLVSRTRACPIC 310
           C   +ILVK L   YG + +G YN T CP     LF*  +S+V   R+C  C
Sbjct: 25  C*RSYILVKGLLVSYGQIGKGSYNITACPRASFSLF*Y*KSMVF*KRSC*SC 180


>BE800242 
          Length = 247

 Score = 36.6 bits (83), Expect = 0.059
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +2

Query: 681 EFFS*GSNSKFSVGIFLEEHFSQ*KW*TLLLSFFS*TASITPQVSLYTSNIHDCLHIQGL 740
           EFF *G++S+FS   F  E+F   +            A+I+ +++LY  N++DC+  + +
Sbjct: 44  EFFL*GTSSEFSACFFFMEYFP*RRA----------IATISSEITLYAGNVNDCVFFKIV 193

Query: 741 QH 742
           QH
Sbjct: 194 QH 199


>BM528154 
          Length = 428

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +2

Query: 184 LQVLSSMVWFMGEFTHISVEFDNVSLASLVN 214
           LQ LS MV FMGE +H+S++FD +    L N
Sbjct: 2   LQALSHMVQFMGEHSHLSMDFDKIISVILEN 94



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 257 GRCYEPWILVKSLYTKYG*VSQGRYNCTTCPGILVPLF**YQSLVSRTRACPICLARYAV 316
           G C    +LVK+L   Y  + +G Y+C  CP      F*  + +V    +C +C   +A+
Sbjct: 211 GCC*RSCLLVKALLV*YCQIGKGSYHCAACPQTTFS*F*F*KPMVF*KGSCFMCFDVFAI 390


>BI973172 similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (5%)
          Length = 420

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 16/45 (35%), Positives = 27/45 (59%)
 Frame = +1

Query: 440 YYSYGKNLDCCSL*NFSNSCIYTEFVVSEQGIP*GIISSVTPGNG 484
           YY + K  + C L N   +  + + V+S+ G P* ++SS+ PG+G
Sbjct: 16  YYHHSKINNHCCLSNSKINHFHPQCVISQ*GFP*CLVSSIAPGHG 150


>BG790858 weakly similar to GP|14194169|gb| At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (11%)
          Length = 417

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/51 (37%), Positives = 25/51 (48%)
 Frame = +2

Query: 266 VKSLYTKYG*VSQGRYNCTTCPGILVPLF**YQSLVSRTRACPICLARYAV 316
           VK L   Y  + +G YNC  CP      F** + LV    +C +C   +AV
Sbjct: 2   VKGLLV*YCQIGKGSYNCAACPRTAFS*F***KPLVF*KGSCFLCFDVFAV 154


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.361    0.161    0.605 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,937,153
Number of Sequences: 63676
Number of extensions: 837106
Number of successful extensions: 8751
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4776
Number of HSP's successfully gapped in prelim test: 337
Number of HSP's that attempted gapping in prelim test: 3830
Number of HSP's gapped (non-prelim): 5433
length of query: 1043
length of database: 12,639,632
effective HSP length: 107
effective length of query: 936
effective length of database: 5,826,300
effective search space: 5453416800
effective search space used: 5453416800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 64 (29.3 bits)