BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.7 + phase: 0
(261 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228653 242 1e-64
TC228654 100 2e-44
TC229542 65 4e-11
AW755649 homologue to GP|18656439|gb| structural glycoprotein UL... 52 4e-07
BF324071 43 1e-04
TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 31 0.50
TC225925 similar to UP|NUFM_ARATH (Q9FLX7) Probable NADH-ubiquin... 30 0.85
TC213693 similar to UP|Q9NJY8 (Q9NJY8) Fruitless protein type B ... 30 0.85
TC210601 30 1.4
TC218177 similar to PIR|T52422|T52422 alternative oxidase-relate... 29 1.9
BF066352 29 1.9
TC216096 homologue to UP|PI27_ARATH (P93004) Aquaporin PIP2.7 (P... 29 2.5
BQ094211 29 2.5
TC217983 UP|Q8GSL0 (Q8GSL0) Phosphoenolpyruvate carboxylase kina... 29 2.5
TC219476 28 3.2
TC216310 similar to UP|Q9LNZ8 (Q9LNZ8) F9C16.20, partial (23%) 28 3.2
TC225564 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 ... 28 3.2
TC208071 UP|Q8GRZ5 (Q8GRZ5) Phosphoenolpyruvate carboxylase kina... 28 3.2
TC219838 28 3.2
TC220296 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-... 27 9.4
>TC228653
Length = 753
Score = 242 bits (617), Expect = 1e-64
Identities = 114/130 (87%), Positives = 123/130 (93%)
Frame = +2
Query: 131 VSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFLCRGDGKGLRIPSPHTP 190
VSQ+IRKAVI+ARQFHFNYTTPDRSR EMLSTMTPRP+EHWPFLC+GDGKG+RIPSPHTP
Sbjct: 17 VSQKIRKAVIIARQFHFNYTTPDRSRQEMLSTMTPRPTEHWPFLCKGDGKGVRIPSPHTP 196
Query: 191 KAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSVASNRVLFCEDE 250
KAPRHGPRPPSRLK+SEMRQVTAVLF ESAF S C+VPSVI KP CKS+ASNRVLF EDE
Sbjct: 197 KAPRHGPRPPSRLKISEMRQVTAVLFPESAFPSHCLVPSVISKPLCKSLASNRVLFYEDE 376
Query: 251 LCKAVAQNKL 260
LC+AVAQNKL
Sbjct: 377 LCQAVAQNKL 406
>TC228654
Length = 624
Score = 100 bits (248), Expect(2) = 2e-44
Identities = 55/104 (52%), Positives = 68/104 (64%), Gaps = 17/104 (16%)
Frame = +1
Query: 8 KGRRKLKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRVCNDIGKKRVELLNLEKN------ 61
KGRR+++ SG KYL+PG LAQLRCSK GSG G C D+GKKRV +L+ K+
Sbjct: 142 KGRRQVRSSGNKYLRPGALAQLRCSKPSGSGGGGKCCCTDLGKKRVAVLHSRKSGGGCGG 321
Query: 62 ----------EDHEGKVFDKSPLMLSPVNLVKQSSS-VGTPKTP 94
++ +VFDKSP+MLSPVNLVK +S VGTPKTP
Sbjct: 322 GGGGSVQQRYVENNIRVFDKSPVMLSPVNLVKHNSGFVGTPKTP 453
Score = 96.7 bits (239), Expect(2) = 2e-44
Identities = 47/64 (73%), Positives = 55/64 (85%)
Frame = +2
Query: 87 SVGTPKTPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQRIRKAVIVARQFH 146
S+G PK +D+ SES+LESLP+DLLVKILC LHHDQLRAVFHVSQ+I KAVI+AR+ H
Sbjct: 431 SLGPPKPLFLDDSLSESKLESLPMDLLVKILCHLHHDQLRAVFHVSQKIIKAVIIARKIH 610
Query: 147 FNYT 150
FNYT
Sbjct: 611 FNYT 622
>TC229542
Length = 943
Score = 64.7 bits (156), Expect = 4e-11
Identities = 51/169 (30%), Positives = 82/169 (48%)
Frame = +3
Query: 48 IGKKRVELLNLEKNEDHEGKVFDKSPLMLSPVNLVKQSSSVGTPKTPRIDECQSESRLES 107
+G+KRV LL+ E + + S VN +K+ S + SRLE+
Sbjct: 135 LGRKRVVLLHNEASSLNSN----------SAVNPLKRMCS------GKFTFDSERSRLEA 266
Query: 108 LPIDLLVKILCCLHHDQLRAVFHVSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRP 167
LP+D+L+++LC + H+ L+ + VS+ +R+A VAR+ HF Y+TP + + P+
Sbjct: 267 LPLDVLIRVLCGVDHEDLKQLVRVSKTVREAAEVARRMHFEYSTPKKKNFAI-----PK- 428
Query: 168 SEHWPFLCRGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLF 216
PF G G I TPKAP + S+L + ++ LF
Sbjct: 429 ----PFDIEGAGGFEEI---DTPKAP--SKKAKSKLIGKNLASISVALF 548
>AW755649 homologue to GP|18656439|gb| structural glycoprotein UL73 {human
herpesvirus 5} [Human herpesvirus 5], partial (13%)
Length = 218
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +3
Query: 6 KRKGRR-KLKKSG-TKYLKPGTLAQLRCSKYLGSGSGAGR---VCNDIGKKRVELLNLEK 60
K KG + K++ SG KYL+PG LAQLRCSK SG G C D+GKKRV + K
Sbjct: 9 KEKGWKVKVRSSGKNKYLRPGALAQLRCSKPSSGSSGGGASKCCCTDLGKKRVAFFHTRK 188
Query: 61 N 61
+
Sbjct: 189S 191
>BF324071
Length = 416
Score = 43.1 bits (100), Expect = 1e-04
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 48 IGKKRVELLNLEKNEDHEGKVFDKSPLMLSPVNLVKQSSSVGTPKTPRIDECQSESRLES 107
+G+KRV LL+ E + + SPVN +K+ S + SRLE+
Sbjct: 205 LGRKRVVLLHSEASSLNSN----------SPVNSLKRMCS------KKFTFDSERSRLEA 336
Query: 108 LPIDLLVKILCCLHHDQLRAVFHVSQ 133
LP+D+L+++LC + H+ L+ + VS+
Sbjct: 337 LPLDVLIRVLCGVDHEDLKQLVRVSK 414
>TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
Length = 1315
Score = 31.2 bits (69), Expect = 0.50
Identities = 24/86 (27%), Positives = 34/86 (38%), Gaps = 14/86 (16%)
Frame = +2
Query: 172 PFLCRGDGKGLRIPSPHT---------PKAP-----RHGPRPPSRLKVSEMRQVTAVLFK 217
P L R + RIP+P P+ P H PRPP R ++ +R L K
Sbjct: 134 PHLQRRLPRRTRIPNPQP*P*PSQSLLPRLPPRRRRHHSPRPPRRRRLPSLRGSLRPLRK 313
Query: 218 ESAFASRCMVPSVIPKPQCKSVASNR 243
+ RC+ P +P + S R
Sbjct: 314 PTRRRRRCLQPPRLPPELLPNPKSRR 391
>TC225925 similar to UP|NUFM_ARATH (Q9FLX7) Probable NADH-ubiquinone
oxidoreductase 18 kDa subunit, mitochondrial precursor
(Complex I-18Kd) (CI-18Kd) , partial (88%)
Length = 809
Score = 30.4 bits (67), Expect = 0.85
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -2
Query: 186 SPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSVASNRV 244
+P + APR PR PS K S A E++F S + P +P +C S + V
Sbjct: 205 APPSRSAPRPAPRSPS--KPSPSPSTAAPPHAETSFYSHSLSPKSLPLQRCCSESGRNV 35
>TC213693 similar to UP|Q9NJY8 (Q9NJY8) Fruitless protein type B (Fragment),
partial (10%)
Length = 375
Score = 30.4 bits (67), Expect = 0.85
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 134 RIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFL 174
RI KA+ V Q TP R ++ P PS+H+PFL
Sbjct: 100 RIWKAMEVVSQPLCTILTPTRKHSLLIPQQIPNPSKHFPFL 222
>TC210601
Length = 584
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 6 KRKGRRKLKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRV 44
K + L+K GT + G + R K+LGSGSG G V
Sbjct: 134 KERNLVNLEKGGTGFAGHGDHLEARDFKHLGSGSGLGLV 250
>TC218177 similar to PIR|T52422|T52422 alternative oxidase-related protein
IMMUTANS [validated] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (70%)
Length = 1084
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 62 EDHEGKVF--DKSPLMLSPVNLVKQSSSVGTPKTPRIDE--CQSESRLESLPIDLLVKIL 117
+D+E KV D P SP++ +S+ + T ++ + E + D ++KIL
Sbjct: 231 QDNEKKVIVHDSFPSKTSPLHTADKSTGGNSINTSAFEKRIIKVEQSVNIFLTDSVIKIL 410
Query: 118 CCLHHDQLRAVFHVSQRIRK 137
L+HD+ A F V + I +
Sbjct: 411 DTLYHDRHYARFFVLETIAR 470
>BF066352
Length = 364
Score = 29.3 bits (64), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 186 SPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKS 238
+P + +APR PR PS K S A E++F S + P +P +C S
Sbjct: 161 APASRRAPRPAPRYPS--KPSPSPSTAAPPHAETSFYSHSLSPKSLPLQRCCS 9
>TC216096 homologue to UP|PI27_ARATH (P93004) Aquaporin PIP2.7 (Plasma
membrane intrinsic protein 3) (Salt-stress induced major
intrinsis protein), partial (97%)
Length = 1043
Score = 28.9 bits (63), Expect = 2.5
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = +2
Query: 162 TMTPRPSEHWPFLCRGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKES 219
T+ PS WP L G PS + P PPS + VTA+ F S
Sbjct: 38 TLRQPPSSTWPRLSSGPSTEPSSPSLSPHSSSSTSPSPPSLATKNRPDHVTALAFSAS 211
>BQ094211
Length = 407
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Frame = +3
Query: 182 LRIPSPHTPKAPRHG-PRPPSRLKVSE 207
LR PS +P P H P PPSRL+ E
Sbjct: 54 LRHPSQRSPSPPPHAHPSPPSRLRARE 134
>TC217983 UP|Q8GSL0 (Q8GSL0) Phosphoenolpyruvate carboxylase kinase, complete
Length = 1203
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 19/43 (43%)
Frame = -1
Query: 160 LSTMTPRPSEHWPFLCRGDGKGLRIPSPHTPKAPRHGPRPPSR 202
L T +P S H P R PSP P APR+ PP R
Sbjct: 630 LYTKSPHSSTHQP--------SHRTPSPTEPPAPRNTASPPRR 526
>TC219476
Length = 899
Score = 28.5 bits (62), Expect = 3.2
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -3
Query: 2 TTTEKRKGRRKLKKS-----GTKYLKPGTLAQLRCSKYLG 36
TT K K RK +K GTK+ KP LAQL +K+LG
Sbjct: 729 TTLSKSKSDRKQEKKRRN*KGTKFRKPQLLAQL--AKWLG 616
>TC216310 similar to UP|Q9LNZ8 (Q9LNZ8) F9C16.20, partial (23%)
Length = 581
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/72 (27%), Positives = 26/72 (35%)
Frame = +1
Query: 122 HDQLRAVFHVSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFLCRGDGKG 181
H++ V HV + V++ FHF+ E S T H P L D
Sbjct: 67 HEEGHCVMHVQWHV--IVLLTMPFHFHQP-------ESSSPPTTSCQNHHPLLLDADPFS 219
Query: 182 LRIPSPHTPKAP 193
P PH P P
Sbjct: 220 CPSPMPHHPTTP 255
>TC225564 similar to UP|Q9SCM3 (Q9SCM3) 40S ribosomal protein S2 homolog
(At3g57490), partial (93%)
Length = 1047
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Frame = -2
Query: 155 SRLEMLSTMTPRPS----EHWPFLCR-GDGKGLRIPSPHTPKAPRHGPRPP--------- 200
SRL +L + T RPS H+ R G + R SP P+ P+ P+PP
Sbjct: 257 SRLRILPSFTRRPSLVTGTHFSSSSRRGPLRRPRPLSPPRPRPPKPRPKPPRSPPRSPPP 78
Query: 201 -SRLKVSEMRQVTA 213
S ++VSE + A
Sbjct: 77 RSAIRVSEREETAA 36
>TC208071 UP|Q8GRZ5 (Q8GRZ5) Phosphoenolpyruvate carboxylase kinase, complete
Length = 1188
Score = 28.5 bits (62), Expect = 3.2
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = -1
Query: 160 LSTMTPRPSEHWPFLCRGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMR 209
L T +P S H P R PSP P APR PP R S R
Sbjct: 606 LYTKSPHSSTHQP--------SHRTPSPTEPPAPRSTASPPRRSCSSRRR 481
>TC219838
Length = 632
Score = 28.5 bits (62), Expect = 3.2
Identities = 13/57 (22%), Positives = 28/57 (48%)
Frame = +1
Query: 78 PVNLVKQSSSVGTPKTPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQR 134
P K+ + V + ++ + S++E LP+++ +KI C L + L V ++
Sbjct: 31 PTVETKRVTVVVVARIVQVKKIAKSSKMEMLPLEICMKIFCLLDYQHLAVAQQVCRK 201
>TC220296 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-related
membrane protein 1 {Arabidopsis thaliana;} , partial
(34%)
Length = 497
Score = 26.9 bits (58), Expect = 9.4
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 SPVNLVKQSSSVGTPKTPRIDECQSE-SRLESLPIDLLVKILCCLHHDQLRAV 128
SP++ + RI C+S+ S E +PI L ++ CCL Q R+V
Sbjct: 296 SPISKESTQGKMVLLYNSRIG*CRSKFSCCEGIPIHLTXQV*CCLTAGQXRSV 454
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,907,584
Number of Sequences: 63676
Number of extensions: 212499
Number of successful extensions: 1926
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136504.7