BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.5 + phase: 0
(201 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217763 weakly similar to GB|AAB68983.1|500656|YSCH9666 Yhr143w... 287 3e-78
TC224308 31 0.44
TC207973 weakly similar to GB|AAP68285.1|31711858|BT008846 At2g1... 30 0.57
TC214205 weakly similar to UP|P93014 (P93014) 30S ribosomal prot... 29 1.3
TC207244 weakly similar to UP|Q75LK9 (Q75LK9) Expressed protein,... 29 1.3
TC207245 similar to UP|Q75LK9 (Q75LK9) Expressed protein, partia... 28 2.2
BM732402 28 2.8
BE331036 weakly similar to SP|P15642|PRP3_S Repetitive proline-r... 28 2.8
TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, part... 28 2.8
TC221793 similar to UP|CENB_HUMAN (P07199) Major centromere auto... 27 4.9
TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 27 4.9
BQ081339 similar to GP|27817931|db P0453E05.6 {Oryza sativa (jap... 27 4.9
TC231220 27 4.9
TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 27 4.9
BM094601 27 4.9
BM892630 27 6.3
TC220766 homologue to UP|Q9Q5L3 (Q9Q5L3) EBNA-2, partial (4%) 27 6.3
TC204408 similar to UP|Q9SJM6 (Q9SJM6) Expressed protein (Zinc f... 27 6.3
TC217695 weakly similar to UP|Q9LUI1 (Q9LUI1) Extensin protein-l... 27 6.3
BE821064 weakly similar to GP|19401700|gb transcription factor R... 27 8.3
>TC217763 weakly similar to GB|AAB68983.1|500656|YSCH9666 Yhr143wp
{Saccharomyces cerevisiae;} , partial (6%)
Length = 985
Score = 287 bits (734), Expect = 3e-78
Identities = 161/220 (73%), Positives = 172/220 (78%), Gaps = 19/220 (8%)
Frame = +1
Query: 1 MAFTHYLPPLQLVKPSLISPKPSLFFNNPP-----------ISITSHFFNPPSTL---HT 46
MAF HYL L P + P P+ F NPP SI+SH FN S+L H+
Sbjct: 67 MAFAHYL----LAVP--VEPSPN-FPTNPPKPNPSLSSSSSSSISSHCFNLSSSLRPKHS 225
Query: 47 LPSGII-----VKAKPQEPEVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALA 101
L S KAKPQEPEV +A+D+FTQFKHLLLPITDR PYLSEGT+QAIATT ALA
Sbjct: 226 LFSRFRRICHKAKAKPQEPEVTVASDAFTQFKHLLLPITDRNPYLSEGTRQAIATTSALA 405
Query: 102 NKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIGD 161
KYGADITVVVID QQKESLPEHETQLSSIRWHLSEGGLKDY LLERLGDG+KPTAIIGD
Sbjct: 406 KKYGADITVVVIDAQQKESLPEHETQLSSIRWHLSEGGLKDYNLLERLGDGNKPTAIIGD 585
Query: 162 VADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 201
VAD+LNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL
Sbjct: 586 VADDLNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 705
>TC224308
Length = 537
Score = 30.8 bits (68), Expect = 0.44
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 32 SITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDSFTQF 72
+ T F+N +H P G++ +K QE I+ SFT+F
Sbjct: 259 AFTFPFYNDNIHIHLTPCGVVFCSKFQEVSSVISNSSFTEF 137
>TC207973 weakly similar to GB|AAP68285.1|31711858|BT008846 At2g16630
{Arabidopsis thaliana;} , partial (47%)
Length = 1235
Score = 30.4 bits (67), Expect = 0.57
Identities = 30/95 (31%), Positives = 42/95 (43%), Gaps = 5/95 (5%)
Frame = +2
Query: 21 KPSLFFNNPPISITSHF--FNPPSTLHTLPSGIIVKAKPQEPEVAIATDSFTQFKHLLLP 78
KP FN PP+ P +L LPS + + P P V A S + LP
Sbjct: 554 KPPPHFNLPPVPGFPPLPPLPPLPSLPPLPSLPPLPSLPPLPPVIFAEASACPSEKWTLP 733
Query: 79 ITDRKPY---LSEGTKQAIATTIALANKYGADITV 110
+ K Y ++ TK A+A + A +YG DIT+
Sbjct: 734 --EYKCYWRGVNGDTKVAVAFGMVAARRYGTDITL 832
>TC214205 weakly similar to UP|P93014 (P93014) 30S ribosomal protein S5,
partial (16%)
Length = 428
Score = 29.3 bits (64), Expect = 1.3
Identities = 21/65 (32%), Positives = 28/65 (42%)
Frame = +3
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAI 64
H LP L P L +P P PP S++S +PPS+ + PS +P I
Sbjct: 66 HPLPWPHLPSPPLSTPSPLYPSPPPPASLSS--LHPPSSPNLSPSSSSTTTLKSKPSDDI 239
Query: 65 ATDSF 69
T F
Sbjct: 240 DTSFF 254
Score = 27.7 bits (60), Expect = 3.7
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHT 46
LPPLQ P L+ P PS NPP ++T H + ST T
Sbjct: 166 LPPLQTSPPPLLLPPPS--NPNPPTTLT-HRSSTTSTRKT 276
>TC207244 weakly similar to UP|Q75LK9 (Q75LK9) Expressed protein, partial
(70%)
Length = 764
Score = 29.3 bits (64), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (49%)
Frame = +3
Query: 70 TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKESLPE 123
++ KH + PYLS+ + +A TI L + G +++ E QKE+ E
Sbjct: 288 SELKHSCKVVVADPPYLSKECLEKVAETIHLLVQPGESFLLLLTGEVQKETAAE 449
>TC207245 similar to UP|Q75LK9 (Q75LK9) Expressed protein, partial (59%)
Length = 860
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (47%)
Frame = +1
Query: 70 TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKESLPE 123
++ KH + PYLS+ + +A TI L + G +++ E QKE E
Sbjct: 208 SELKHSCKVVVADPPYLSKECLEKVAETIHLLVQPGESFLLLLTGEVQKERAAE 369
>BM732402
Length = 405
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +2
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPP 30
H LPP L+ P L P P N PP
Sbjct: 272 HLLPPRSLLSPKLSKPPPPYRTNPPP 349
>BE331036 weakly similar to SP|P15642|PRP3_S Repetitive proline-rich cell
wall protein 3 precursor. [Soybean] {Glycine max},
partial (92%)
Length = 253
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
Frame = +2
Query: 6 YLPPLQ---LVKPSLISPKPSLFFNNPPISITSHFFNPP 41
Y PPL L P + +PKP ++ PP F+NPP
Sbjct: 86 YNPPLSNPPLSNPPVFNPKPPVYNPKPP------FYNPP 184
>TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, partial (59%)
Length = 2299
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +2
Query: 10 LQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGI 51
LQ+ + P P + NN P I SH+ +P +T LPS +
Sbjct: 341 LQVKSSPPVQPTPQV--NNDPAIIQSHYPHPITTSTNLPSAV 460
>TC221793 similar to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (3%)
Length = 801
Score = 27.3 bits (59), Expect = 4.9
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 9/54 (16%)
Frame = +3
Query: 8 PPLQLVKPSLISPKPS---LFFNNPPISITSHFFNPP------STLHTLPSGII 52
PP +KP L+SPKPS L PP S +SH + P S+L + PSG +
Sbjct: 153 PPF--LKPCLLSPKPSTLALHLAEPP-SSSSHASSSPSPSSFSSSLFSDPSGTL 305
>TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (97%)
Length = 1513
Score = 27.3 bits (59), Expect = 4.9
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 149 LGDGSKPTAIIGDVADELNLDLVVI-SMEAIHTKHIDAN 186
LGDG K + VAD+L+ +V I ++A+ TK DA+
Sbjct: 797 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 913
>BQ081339 similar to GP|27817931|db P0453E05.6 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 420
Score = 27.3 bits (59), Expect = 4.9
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Frame = +2
Query: 14 KPSLISPKPSLFFNN-----PPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDS 68
KPS P P L +N PP PP PSG + P P + I T S
Sbjct: 101 KPSSAPPPPPLLPSNANPPPPP---------PPPLPKASPSGDSLLQPPTPPPITITTTS 253
Query: 69 FTQFKHLLLPITDRKPYLSEGT 90
Q LLL + K S+ +
Sbjct: 254 SKQTLILLLHLHHLKSTTSKNS 319
>TC231220
Length = 607
Score = 27.3 bits (59), Expect = 4.9
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 15/67 (22%)
Frame = -1
Query: 6 YLPPLQLVKPSLISPKPSLFFNN------------PPISITS---HFFNPPSTLHTLPSG 50
+ PP +++K +++ K + F + PP SI + HFF S LH+LP+
Sbjct: 289 FAPPAKIIKL*MLTEKSTKFAQSMTSRIEVILLCIPPASIFTFQFHFFAKTSPLHSLPA- 113
Query: 51 IIVKAKP 57
V KP
Sbjct: 112 --VTTKP 98
>TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (93%)
Length = 1433
Score = 27.3 bits (59), Expect = 4.9
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 149 LGDGSKPTAIIGDVADELNLDLVVI-SMEAIHTKHIDAN 186
LGDG K + VAD+L+ +V I ++A+ TK DA+
Sbjct: 694 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 810
>BM094601
Length = 429
Score = 27.3 bits (59), Expect = 4.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 8 PPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTL 44
PP L+ SL P P L PP++ F PP L
Sbjct: 200 PPFPLLPLSLPLPTPLLSLPTPPLAHHLSLFQPPLAL 310
>BM892630
Length = 421
Score = 26.9 bits (58), Expect = 6.3
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -2
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIAT 66
LPP P + P P LFF N + S LH S + A P++ ++++ T
Sbjct: 384 LPP----PPPPLKPNP*LFFTNTALF---------SLLHPFSSPFLNTAPPKKHKLSLPT 244
Query: 67 DSFTQF 72
SF F
Sbjct: 243 LSFKLF 226
>TC220766 homologue to UP|Q9Q5L3 (Q9Q5L3) EBNA-2, partial (4%)
Length = 885
Score = 26.9 bits (58), Expect = 6.3
Identities = 22/79 (27%), Positives = 31/79 (38%)
Frame = +3
Query: 19 SPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDSFTQFKHLLLP 78
SP P+ +NP S++S +PPS AKP P I T +LP
Sbjct: 9 SPSPTTLSSNPKPSLSSTASDPPS------------AKPYHPLPTIIT---------ILP 125
Query: 79 ITDRKPYLSEGTKQAIATT 97
++ P +K TT
Sbjct: 126LSLSNPNSPPSSKTRFTTT 182
>TC204408 similar to UP|Q9SJM6 (Q9SJM6) Expressed protein (Zinc finger-like
protein), partial (68%)
Length = 1097
Score = 26.9 bits (58), Expect = 6.3
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 3/52 (5%)
Frame = -1
Query: 1 MAFTHYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNP---PSTLHTLPS 49
+AF H + P L+ P + + + F P+S T P PS H LP+
Sbjct: 740 LAFDHGIRPCYLLSPHRLEIEATRVFLGVPVSPTKRGSAPALKPSQSHALPT 585
>TC217695 weakly similar to UP|Q9LUI1 (Q9LUI1) Extensin protein-like,
partial (8%)
Length = 822
Score = 26.9 bits (58), Expect = 6.3
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +1
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPS 42
HY P L L P SP P++ NP + + NP S
Sbjct: 40 HYYPHLFLSIPLSRSPSPTISKTNPSFKVITDT*NPHS 153
>BE821064 weakly similar to GP|19401700|gb transcription factor RAU1 {Oryza
sativa}, partial (69%)
Length = 715
Score = 26.6 bits (57), Expect = 8.3
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = -2
Query: 120 SLPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAI 158
SLP T++SSI L G YK+ + G + P +I
Sbjct: 618 SLPSSSTKMSSIEMFLQIQGSVPYKIRAKRGFATHPRSI 502
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,142,800
Number of Sequences: 63676
Number of extensions: 138730
Number of successful extensions: 1019
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of query: 201
length of database: 12,639,632
effective HSP length: 92
effective length of query: 109
effective length of database: 6,781,440
effective search space: 739176960
effective search space used: 739176960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC136504.5