BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.3 + phase: 0 /pseudo
(513 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 326 2e-89
TC219624 weakly similar to GB|AAM98276.1|22655368|AY142012 At2g1... 189 2e-48
TC217141 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 146 2e-39
CA799089 65 6e-11
TC232153 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At... 64 1e-10
TC218655 similar to PIR|H86142|H86142 F6F3.7 protein - Arabidops... 36 0.047
TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 35 0.081
TC205172 similar to UP|DX_DROME (Q23985) Deltex protein, partial... 33 0.40
TC205363 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (59%) 32 0.52
AI900422 32 0.52
TC206320 similar to UP|Q9W4F9 (Q9W4F9) CG32772-PA, partial (10%) 32 0.68
BU927201 32 0.89
TC228532 similar to UP|Q8GZE8 (Q8GZE8) Dehydration-responsive el... 32 0.89
TC220413 similar to UP|Q9LF51 (Q9LF51) Glutamine-rich protein, p... 32 0.89
BF071504 31 1.2
TC223968 31 1.5
TC217981 similar to UP|Q9VSK3 (Q9VSK3) CG7015-PA, partial (3%) 31 1.5
TC203605 similar to UP|O49622 (O49622) NAP16kDa protein, partial... 31 1.5
TC217837 similar to PIR|S65780|S65780 glycine/proline-rich prote... 30 2.0
TC217838 weakly similar to PIR|A03357|CVJBP concanavalin A precu... 30 2.0
>TC217140 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (47%)
Length = 1383
Score = 326 bits (835), Expect = 2e-89
Identities = 230/399 (57%), Positives = 262/399 (65%), Gaps = 2/399 (0%)
Frame = +3
Query: 117 YGFWWHWIPAVTCFGYLVIVPVACAV*RHKMER*LILISMNLISHLQGKMFHAIATCVN- 175
Y FWWHWI AVTC GYL IVP C V* ++MER L+LISM L H Q F AIA V+
Sbjct: 6 YRFWWHWILAVTCSGYLAIVPNVCMV*AYQMERKLLLISMILKDHPQANPFCAIAAYVSY 185
Query: 176 KHNAIHPVAVVGMKLSIFQMILHLLDS*LKMCYI*LQIMIKQKILTHKLPLVVAKFRLVC 235
+ NA+H + V MK +I++M+L LLDS KMC *LQ+ IKQK+ TH+L LVVAKFRLV
Sbjct: 186 RDNALHLIPSVHMK*TIYRMVLQLLDSWWKMCCT*LQMTIKQKMPTHELLLVVAKFRLVH 365
Query: 236 F*MVQLQMVYLDLVWKMYLFRAS*PKRGLFQILFQCVLDLMVLEESRLGIPAAQTKEKHH 295
F M QLQMV LD M L + S*PK+G +I FQCVLDLMVLEES LGI A +KE+HH
Sbjct: 366 FWMGQLQMVCLD*E*AMNLSQVS*PKKGSLRIPFQCVLDLMVLEESHLGIIVAWSKERHH 545
Query: 296 STSGNHILHITSPLHKLLWEDMLPIMSFMQFSTPVPHSHT*MTQLIR*FPRSSIL*SKQI 355
STSG+ IL ITSPL KLLWE L I SFMQ+ T VP SHT* TQLI I
Sbjct: 546 STSGHCILLITSPLPKLLWEKKLMISSFMQYLTLVPRSHT*TTQLISRLLTVLIQKLNYN 725
Query: 356 DIRLCHLIRISPLNTVMT*VQIRQLKFPF*I*Q*KVEMIIMSRIQLYLFLVRLKEIFFVW 415
I+L L+ SPL+TVM *V R L FP I* *KVE II+SR +VR+ +FVW
Sbjct: 726 GIQLLVLMS-SPLSTVMN*VLTRLLNFPL-I*L*KVETIILSRTL**RSVVRVL-TYFVW 896
Query: 416 EYRKVTI*ISLDKTS*LVTV*SSIVRT*TLVGRNLTVLKKCS-PYLLTNLILLLFPLLLL 474
E K T *IS DK S*LVTV*S VRT* LVG NLTV+ S YLLT+ I LLF L L
Sbjct: 897 ES*KATT*IS*DKIS*LVTV*SLTVRT*FLVGGNLTVMMMNSLLYLLTDQIHLLFLLP*L 1076
Query: 475 LILWLDQTHQVILEDFHLISHLGRSLLLHLW*SFLHLEP 513
IL DQ +IL HLISHL +LLL L FL P
Sbjct: 1077*ILKQDQASLIIL-CCHLISHLR*NLLLRL*WPFLCFWP 1190
>TC219624 weakly similar to GB|AAM98276.1|22655368|AY142012
At2g17760/At2g17760 {Arabidopsis thaliana;} , partial
(12%)
Length = 800
Score = 189 bits (481), Expect = 2e-48
Identities = 128/202 (63%), Positives = 137/202 (67%), Gaps = 3/202 (1%)
Frame = +1
Query: 315 EDMLPIMSFMQFSTPVPHSHT*MTQLIR*FPRSSIL*SKQIDIRLCHLIRISPLNTVMT* 374
E +L I SFMQF T VP HT*MTQLI R +I SKQI L HLI ISPL+ VMT*
Sbjct: 10 EIVLLIWSFMQFLTLVPLLHT*MTQLIHDLVRCTIQKSKQIGTHLNHLILISPLSIVMT* 189
Query: 375 VQIRQLKFPF*I*Q*KVEMIIMSRIQLYLFLVRLKEIFFVWEYRKVTI*ISLDKTS*LVT 434
V IRQLKFPF*I*Q*KVEMIIMS I Y FLVR KE FFVWE RKVT *ISLDKTS*LVT
Sbjct: 190 V*IRQLKFPF*I*Q*KVEMIIMSWIL*YKFLVRRKETFFVWESRKVTA*ISLDKTS*LVT 369
Query: 435 V*SSIVRT*TLVGRNLTVLKKCSP---YLLTNLILLLFPLLLLLILWLDQTHQVILEDFH 491
S IV T* LVGR L VL CS L + LLLF LL L I WL + H++ H
Sbjct: 370 KLSLIVTT*ILVGRKLIVLMMCSQIHHQLTHHRPLLLFLLLSL*IPWLHRIHRLT----H 537
Query: 492 LISHLGRSLLLHLW*SFLHLEP 513
L+ H G +L LHLW SF HL P
Sbjct: 538 LMDHSGLNLPLHLWWSFCHL*P 603
>TC217141 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (26%)
Length = 780
Score = 146 bits (369), Expect(2) = 2e-39
Identities = 105/186 (56%), Positives = 124/186 (66%), Gaps = 2/186 (1%)
Frame = +2
Query: 281 SRLGIPAAQTKEKHHSTSGNHILHITSPLHKLLWEDMLPIMSFMQFSTPVPHSHT*MTQL 340
S LGI A +KE+HHSTSG+ L ITS L KLLWE+MLPI+SFMQ+ T VP SHT* T+L
Sbjct: 2 SHLGIIVAWSKERHHSTSGHCTLLITSLLPKLLWEEMLPILSFMQYLTLVPRSHT*TTRL 181
Query: 341 IR*FPRSSIL*SKQIDIRLCHLIRI--SPLNTVMT*VQIRQLKFPF*I*Q*KVEMIIMSR 398
I SIL Q++ HL+ + SPL+TVMT*VQ R L FP I* *KVE II+S+
Sbjct: 182 ISRLLTVSIL---QLNYNGIHLLVLMSSPLSTVMT*VQTRLLNFPL-I*P*KVETIILSQ 349
Query: 399 IQLYLFLVRLKEIFFVWEYRKVTI*ISLDKTS*LVTV*SSIVRT*TLVGRNLTVLKKCSP 458
+VR+ +FVWE K T+* S DKTS*LVTV*S VRT* LVG NLTV P
Sbjct: 350 TL**RSVVRVL-TYFVWES*KATM*TS*DKTS*LVTV*SLTVRT*FLVGGNLTV-STVHP 523
Query: 459 YLLTNL 464
Y + L
Sbjct: 524 YCFSTL 541
Score = 34.7 bits (78), Expect(2) = 2e-39
Identities = 29/55 (52%), Positives = 32/55 (57%)
Frame = +3
Query: 459 YLLTNLILLLFPLLLLLILWLDQTHQVILEDFHLISHLGRSLLLHLW*SFLHLEP 513
YLLT+ I LLF L L IL DQ +IL HLISHL +LLL L FL P
Sbjct: 612 YLLTDQIHLLFLLP*L*ILKQDQASLIIL-CCHLISHLR*NLLLRL*WPFLCFWP 773
>CA799089
Length = 435
Score = 65.5 bits (158), Expect = 6e-11
Identities = 56/98 (57%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +2
Query: 375 VQIRQLKFPF*I*Q*KVEMIIMSRIQLYLFLVRLKEIFFVWEYRKVTI*ISLDKTS*LVT 434
VQ R L FP I* *KVE II+SR +VR+ +FVWE K T * DK S*LVT
Sbjct: 146 VQTRLLNFPL-I*L*KVETIILSRTL**RSVVRVLT-YFVWES*KATT*TL*DKIS*LVT 319
Query: 435 V*SSIVRT*TLVGRNLTVLKKCS-PYLLTNLILLLFPL 471
V*S VRT* LVG NLTV+ S YLLT+ I LLF L
Sbjct: 320 V*SLTVRT*FLVGGNLTVMMMNSLLYLLTDQIHLLFLL 433
>TC232153 similar to GB|AAM98276.1|22655368|AY142012 At2g17760/At2g17760
{Arabidopsis thaliana;} , partial (6%)
Length = 521
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/95 (47%), Positives = 51/95 (53%)
Frame = +2
Query: 9 CCCCC*WCWC*VYLHTVATAWGNSVWIFIIDSRIQ*PRF*ALVMMNCYLIKELLNTMLLW 68
CCCCC C*V L VAT S F S I * RF A ++ Y +EL NTMLLW
Sbjct: 257 CCCCC----C*V*LRRVATLSIRSGSTFTTVSPIP*KRFSAFMI---YPTRELDNTMLLW 415
Query: 69 FIEIAFFMAGDSPMIVIRRSLSPPAMKLIRLLLLD 103
E + AGDSP + R SL P +LIRL LD
Sbjct: 416 PTETEYSGAGDSPPVTTRLSLLSPPTRLIRLKPLD 520
>TC218655 similar to PIR|H86142|H86142 F6F3.7 protein - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (4%)
Length = 1041
Score = 35.8 bits (81), Expect = 0.047
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 9 CCCCC*WCWC 18
CCCCC WCWC
Sbjct: 104 CCCCCWWCWC 75
>TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (50%)
Length = 1604
Score = 35.0 bits (79), Expect = 0.081
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Frame = -1
Query: 3 LYIRHW--------CCCCC*WCWC*VYLH 23
LY+ W CCCCC W WC YLH
Sbjct: 344 LYVGFWRFRGCVFGCCCCCCWYWC-YYLH 261
>TC205172 similar to UP|DX_DROME (Q23985) Deltex protein, partial (4%)
Length = 579
Score = 32.7 bits (73), Expect = 0.40
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 8 WCCCCC*WCWC 18
WCCCCC W WC
Sbjct: 70 WCCCCC-WWWC 41
Score = 28.1 bits (61), Expect = 9.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 8 WCCCCC*WCWC 18
WCCCC WC C
Sbjct: 85 WCCCC--WCCC 59
>TC205363 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (59%)
Length = 1352
Score = 32.3 bits (72), Expect = 0.52
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 8 WCCCCC*WCW 17
WCCCCC W W
Sbjct: 91 WCCCCCWWWW 62
Score = 28.1 bits (61), Expect = 9.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 8 WCCCCC*WCW 17
W CCCC W W
Sbjct: 94 WWCCCCCWWW 65
>AI900422
Length = 373
Score = 32.3 bits (72), Expect = 0.52
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 8 WCCCCC*WCW 17
WCCCCC W W
Sbjct: 132 WCCCCCWWWW 103
Score = 28.1 bits (61), Expect = 9.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 8 WCCCCC*WCW 17
W CCCC W W
Sbjct: 135 WWCCCCCWWW 106
>TC206320 similar to UP|Q9W4F9 (Q9W4F9) CG32772-PA, partial (10%)
Length = 1120
Score = 32.0 bits (71), Expect = 0.68
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 8 WCCCCC*WCW 17
WCCCCC W W
Sbjct: 399 WCCCCCCWGW 370
>BU927201
Length = 444
Score = 31.6 bits (70), Expect = 0.89
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 9 CCCCC*WCWC 18
CCCCC W WC
Sbjct: 151 CCCCCCWYWC 122
>TC228532 similar to UP|Q8GZE8 (Q8GZE8) Dehydration-responsive element
binding protein 3, partial (55%)
Length = 1565
Score = 31.6 bits (70), Expect = 0.89
Identities = 11/28 (39%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
Frame = -1
Query: 9 CCCCC*-WCWC*VYLHTVATAWGNSVWI 35
CCCCC* W W *+ +W + +W+
Sbjct: 551 CCCCC*MWIWA*I*TIWSGVSWLSLIWL 468
>TC220413 similar to UP|Q9LF51 (Q9LF51) Glutamine-rich protein, partial (31%)
Length = 761
Score = 31.6 bits (70), Expect = 0.89
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 9 CCCCC*WCWC*VYLHTVATAWGNSVWIFII 38
CCCCC CWC + ++ + S FII
Sbjct: 302 CCCCCCCCWCNAFASSIFSQK*KSKRKFII 213
>BF071504
Length = 422
Score = 31.2 bits (69), Expect = 1.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 9 CCCCC*WCWC*VYLHTV 25
CCCCC CWC + ++
Sbjct: 242 CCCCCCCCWCNAFASSI 192
>TC223968
Length = 538
Score = 30.8 bits (68), Expect = 1.5
Identities = 27/109 (24%), Positives = 51/109 (46%)
Frame = +3
Query: 204 LKMCYI*LQIMIKQKILTHKLPLVVAKFRLVCF*MVQLQMVYLDLVWKMYLFRAS*PKRG 263
+KMCY L +I Q ++ +V+ F + ++ V +W++ + R +G
Sbjct: 186 MKMCY--LGWIIHQ*MVLCNKSMVLISFPPQTVLLYWIKKVMA--IWRLGILRKLLKNKG 353
Query: 264 LFQILFQCVLDLMVLEESRLGIPAAQTKEKHHSTSGNHILHITSPLHKL 312
+F + Q LD + L + +L P + + HH S H+L P H++
Sbjct: 354 MFSRVLQ--LDRLRLPDLKLVAPVSYSP--HHCISVKHLLFRLDPEHQI 488
>TC217981 similar to UP|Q9VSK3 (Q9VSK3) CG7015-PA, partial (3%)
Length = 738
Score = 30.8 bits (68), Expect = 1.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 9 CCCCC*WCWC 18
CCCCC CWC
Sbjct: 178 CCCCCSCCWC 149
Score = 28.5 bits (62), Expect = 7.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 9 CCCCC*WCW 17
CCC C WCW
Sbjct: 172 CCCSCCWCW 146
>TC203605 similar to UP|O49622 (O49622) NAP16kDa protein, partial (52%)
Length = 906
Score = 30.8 bits (68), Expect = 1.5
Identities = 10/21 (47%), Positives = 11/21 (51%), Gaps = 7/21 (33%)
Frame = -1
Query: 4 YIRHWCCCCC*-------WCW 17
+ R WCCCCC WCW
Sbjct: 285 WCRCWCCCCCRCRCCCCCWCW 223
>TC217837 similar to PIR|S65780|S65780 glycine/proline-rich protein GPRP -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(40%)
Length = 891
Score = 30.4 bits (67), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 9 CCCCC*WCWC*VYLHTVATAWGNSV-WIFIIDSR 41
CCCCC WC + +++ W S+ W + + +R
Sbjct: 559 CCCCCRCLWCSPHGTWISSFWTRSLPWSWKVQAR 660
>TC217838 weakly similar to PIR|A03357|CVJBP concanavalin A precursor - jack
bean {Canavalia ensiformis;} , partial (52%)
Length = 1202
Score = 30.4 bits (67), Expect = 2.0
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 9 CCCCC*WCWC*VYLHTVATAWGNSV-WIFIIDSR 41
CCCCC WC + +++ W S+ W + + +R
Sbjct: 761 CCCCCRCLWCSPHGTWISSFWTRSLPWSWKVQAR 862
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.357 0.158 0.571
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,430,663
Number of Sequences: 63676
Number of extensions: 480661
Number of successful extensions: 15924
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 9211
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 2348
Number of HSP's gapped (non-prelim): 12338
length of query: 513
length of database: 12,639,632
effective HSP length: 101
effective length of query: 412
effective length of database: 6,208,356
effective search space: 2557842672
effective search space used: 2557842672
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC136504.3