BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.11 + phase: 0
(137 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226082 homologue to UP|Q8S2V3 (Q8S2V3) Small G-protein ROP9, c... 243 2e-65
TC226029 homologue to UP|RAC1_BETVU (Q39435) RAC-like GTP bindin... 241 1e-64
TC226026 homologue to UP|Q9SWE8 (Q9SWE8) RAC-like G-protein Rac1... 241 1e-64
TC225501 homologue to UP|Q9SXT7 (Q9SXT7) Rac-type small GTP-bind... 238 5e-64
TC226028 homologue to GB|AAD00118.1|4097583|NTU64924 NTGP3 {Nico... 238 5e-64
TC225499 homologue to UP|Q9M628 (Q9M628) Small GTP binding prote... 238 7e-64
TC230661 homologue to UP|RAC2_ARATH (Q38903) RAC-like GTP bindin... 231 1e-61
TC229274 homologue to UP|RAC2_LOTJA (Q40220) RAC-like GTP bindin... 223 2e-59
TC216237 similar to UP|Q70WD8 (Q70WD8) RAC-ROP-like G-protein, p... 221 6e-59
TC229273 homologue to UP|RAC2_LOTJA (Q40220) RAC-like GTP bindin... 191 1e-49
TC219892 homologue to UP|O82480 (O82480) Rac GTP binding protein... 181 1e-46
TC226084 UP|Q8S2V3 (Q8S2V3) Small G-protein ROP9, partial (44%) 176 2e-45
BM307080 homologue to PIR|T08950|T08 GTP binding protein Arac7 [... 157 1e-39
TC234625 similar to GB|AAA36544.1|190875|HUMRASAA ras-like prote... 149 3e-37
BE023304 homologue to GP|7262647|gb|A Rac-like protein Rop1 {Tra... 120 3e-28
BU546050 86 6e-18
TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB... 82 1e-16
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 80 3e-16
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete 80 3e-16
TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding prote... 79 5e-16
>TC226082 homologue to UP|Q8S2V3 (Q8S2V3) Small G-protein ROP9, complete
Length = 1127
Score = 243 bits (620), Expect = 2e-65
Identities = 119/122 (97%), Positives = 120/122 (97%)
Frame = +3
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS VNLGLWD
Sbjct: 207 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWD 386
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct: 387 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 566
Query: 121 GM 122
+
Sbjct: 567 DL 572
>TC226029 homologue to UP|RAC1_BETVU (Q39435) RAC-like GTP binding protein
RHO1, complete
Length = 995
Score = 241 bits (614), Expect = 1e-64
Identities = 116/122 (95%), Positives = 121/122 (99%)
Frame = +2
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 197 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 376
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 377 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 556
Query: 121 GM 122
+
Sbjct: 557 DL 562
>TC226026 homologue to UP|Q9SWE8 (Q9SWE8) RAC-like G-protein Rac1, complete
Length = 1339
Score = 241 bits (614), Expect = 1e-64
Identities = 116/122 (95%), Positives = 121/122 (99%)
Frame = +3
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 72 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 251
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 252 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 431
Query: 121 GM 122
+
Sbjct: 432 DL 437
>TC225501 homologue to UP|Q9SXT7 (Q9SXT7) Rac-type small GTP-binding protein,
complete
Length = 1075
Score = 238 bits (608), Expect = 5e-64
Identities = 114/122 (93%), Positives = 121/122 (98%)
Frame = +2
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 92 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 271
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 272 TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKL 451
Query: 121 GM 122
+
Sbjct: 452 DL 457
>TC226028 homologue to GB|AAD00118.1|4097583|NTU64924 NTGP3 {Nicotiana
tabacum;} , partial (63%)
Length = 494
Score = 238 bits (608), Expect = 5e-64
Identities = 115/122 (94%), Positives = 120/122 (98%)
Frame = +3
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNL LWD
Sbjct: 123 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLALWD 302
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 303 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 482
Query: 121 GM 122
+
Sbjct: 483 DL 488
>TC225499 homologue to UP|Q9M628 (Q9M628) Small GTP binding protein RACDP,
partial (65%)
Length = 554
Score = 238 bits (607), Expect = 7e-64
Identities = 114/120 (95%), Positives = 120/120 (100%)
Frame = +3
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 171 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 350
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 351 TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKL 530
>TC230661 homologue to UP|RAC2_ARATH (Q38903) RAC-like GTP binding protein
ARAC2, partial (74%)
Length = 632
Score = 231 bits (588), Expect = 1e-61
Identities = 108/122 (88%), Positives = 117/122 (95%)
Frame = +1
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV V+GSTVNLGLWD
Sbjct: 127 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVTVDGSTVNLGLWD 306
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+L +SLISKASYEN+SKKWIPEL+HYAP VPI+LVGTKL
Sbjct: 307 TAGQEDYNRLRPLSYRGADVFLLCYSLISKASYENISKKWIPELRHYAPNVPIVLVGTKL 486
Query: 121 GM 122
+
Sbjct: 487 DL 492
>TC229274 homologue to UP|RAC2_LOTJA (Q40220) RAC-like GTP binding protein
RAC2, complete
Length = 973
Score = 223 bits (568), Expect = 2e-59
Identities = 106/122 (86%), Positives = 116/122 (94%)
Frame = +2
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MS +RFIKCVTVG VGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 152 MSTARFIKCVTVGYVVVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 331
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+SKKWIPEL+HYAP VPI+LVGTKL
Sbjct: 332 TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPIVPIVLVGTKL 511
Query: 121 GM 122
+
Sbjct: 512 DL 517
>TC216237 similar to UP|Q70WD8 (Q70WD8) RAC-ROP-like G-protein, partial (90%)
Length = 1651
Score = 221 bits (564), Expect = 6e-59
Identities = 102/121 (84%), Positives = 114/121 (93%)
Frame = +2
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+A RFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV G TVNLGLWDT
Sbjct: 218 TAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLWDT 397
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLG 121
AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+H+APG+P++LVGTKL
Sbjct: 398 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLD 577
Query: 122 M 122
+
Sbjct: 578 L 580
>TC229273 homologue to UP|RAC2_LOTJA (Q40220) RAC-like GTP binding protein
RAC2, partial (72%)
Length = 428
Score = 191 bits (484), Expect = 1e-49
Identities = 90/98 (91%), Positives = 96/98 (97%)
Frame = +3
Query: 25 SYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84
SYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LA
Sbjct: 3 SYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA 182
Query: 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLGM 122
FSLISKASYEN+SKKWIPEL+HYAP VPI+LVGTKL +
Sbjct: 183 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKLDL 296
>TC219892 homologue to UP|O82480 (O82480) Rac GTP binding protein Arac7,
partial (47%)
Length = 421
Score = 181 bits (459), Expect = 1e-46
Identities = 85/99 (85%), Positives = 94/99 (94%)
Frame = +3
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+AS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+GS VNLGLWD
Sbjct: 96 MNASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWD 275
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK 99
TAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KK
Sbjct: 276 TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKK 392
>TC226084 UP|Q8S2V3 (Q8S2V3) Small G-protein ROP9, partial (44%)
Length = 431
Score = 176 bits (447), Expect = 2e-45
Identities = 86/87 (98%), Positives = 86/87 (98%)
Frame = +2
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS VNLGLWD
Sbjct: 170 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWD 349
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSL 87
TAGQEDYNRLRPLSYRGADVFILAFSL
Sbjct: 350 TAGQEDYNRLRPLSYRGADVFILAFSL 430
>BM307080 homologue to PIR|T08950|T08 GTP binding protein Arac7 [imported] -
Arabidopsis thaliana, partial (49%)
Length = 423
Score = 157 bits (398), Expect = 1e-39
Identities = 72/89 (80%), Positives = 83/89 (92%)
Frame = +3
Query: 34 DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
DY+PTVFDNFSANV V+GS VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASY
Sbjct: 129 DYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASY 308
Query: 94 ENVSKKWIPELKHYAPGVPIILVGTKLGM 122
ENV KKW+PEL+ +AP VPI+LVGTKL +
Sbjct: 309 ENVLKKWMPELRRFAPNVPIVLVGTKLDL 395
>TC234625 similar to GB|AAA36544.1|190875|HUMRASAA ras-like protein {Homo
sapiens;} , partial (73%)
Length = 606
Score = 149 bits (377), Expect = 3e-37
Identities = 68/113 (60%), Positives = 86/113 (75%)
Frame = +1
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
+K V VGDG+VGKT LLISYT+ +FP +Y PTVFDN+S V++ V+LGL DTAGQED
Sbjct: 46 VKLVVVGDGSVGKTSLLISYTTGSFPHEYCPTVFDNYSCMVLLGSKQVSLGLMDTAGQED 225
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119
Y+R+RPLSY D+F++ FS+ SKAS NV KW+ E+KH+ P P ILVGTK
Sbjct: 226 YDRIRPLSYPNTDIFLICFSITSKASLNNVKNKWLTEVKHHCPNTPFILVGTK 384
>BE023304 homologue to GP|7262647|gb|A Rac-like protein Rop1 {Tradescantia
virginiana}, partial (27%)
Length = 422
Score = 120 bits (300), Expect = 3e-28
Identities = 54/69 (78%), Positives = 62/69 (89%)
Frame = +1
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLGM 122
GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+H+APG+P++LVGTKLG
Sbjct: 184 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLGK 363
Query: 123 SIFGQCNIC 131
S F N C
Sbjct: 364 SSFNCINAC 390
>BU546050
Length = 615
Score = 85.9 bits (211), Expect = 6e-18
Identities = 37/49 (75%), Positives = 46/49 (93%)
Frame = -1
Query: 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLGM 122
SYRGADV +LAFSL+S+ASYENV KKWIPEL+H+APG+P++LVGTKL +
Sbjct: 615 SYRGADVXVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDL 469
>TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB8-1,
complete
Length = 1129
Score = 81.6 bits (200), Expect = 1e-16
Identities = 41/118 (34%), Positives = 69/118 (57%), Gaps = 2/118 (1%)
Frame = +1
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +F T ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 190 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 369
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + +AS+ N+ + WI + +H + V ILVG K M
Sbjct: 370 RFRTITTAYYRGAMGILLVYDVTDEASFNNI-RNWIRNIEQHASDNVNKILVGNKADM 540
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 80.1 bits (196), Expect = 3e-16
Identities = 41/114 (35%), Positives = 67/114 (57%), Gaps = 2/114 (1%)
Frame = +1
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ ++ +++ Y+ T+ +F V +G T+ L +WDTAGQE
Sbjct: 169 KLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 348
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
+ + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K
Sbjct: 349 FRTITSSYYRGAHGIIIVYDVTDEESFNNV-KQWLSEIDRYASDNVNKLLVGNK 507
>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
Length = 860
Score = 80.1 bits (196), Expect = 3e-16
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD +VGK+CLL+ + +++ Y+ T+ +F V + G TV L +WDTAGQE
Sbjct: 108 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQER 287
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
+ + YRGA I+ + + S+ NV K+W+ E+ YA V +LVG K
Sbjct: 288 FRTITSSYYRGAHGIIIVYDVTEMESFNNV-KQWLNEIDRYANDSVCKLLVGNK 446
>TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding protein, complete
Length = 1011
Score = 79.3 bits (194), Expect = 5e-16
Identities = 40/118 (33%), Positives = 68/118 (56%), Gaps = 2/118 (1%)
Frame = +2
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
IK + +GD VGK+CLL+ ++ +F T ++ T+ +F + ++ + L +WDTAGQE
Sbjct: 155 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTAGQE 334
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLGM 122
+ + YRGA +L + + +AS+ N+ + WI + +H + V ILVG K M
Sbjct: 335 RFRTITTAYYRGAMGILLVYDVTDEASFNNI-RNWIRNIEQHASDNVNKILVGNKADM 505
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,750,641
Number of Sequences: 63676
Number of extensions: 85441
Number of successful extensions: 539
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of query: 137
length of database: 12,639,632
effective HSP length: 87
effective length of query: 50
effective length of database: 7,099,820
effective search space: 354991000
effective search space used: 354991000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136504.11