BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136502.1 + phase: 0
(64 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227798 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial... 79 5e-16
TC229346 similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial (65%) 70 2e-13
TC203796 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial... 57 1e-09
TC203836 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial... 57 2e-09
TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein ... 39 7e-04
TC210870 32 0.049
CD404980 30 0.19
BI469021 similar to GP|9759176|dbj| contains similarity to patho... 29 0.42
BF597307 similar to SP|Q9FVI1|ADF2 Actin-depolymerizing factor 2... 28 1.2
TC225804 homologue to UP|Q8W4U9 (Q8W4U9) Clathrin assembly prote... 27 2.1
BG790757 similar to GP|10172594|dbj contains similarity to hemol... 27 2.7
CA800269 weakly similar to PIR|T04761|T047 chitinase homolog T16... 26 3.5
TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co... 25 6.0
TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete 25 6.0
CA939014 25 6.0
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 25 6.0
TC210293 weakly similar to UP|Q9LW35 (Q9LW35) Alcohol dehydrogen... 25 6.0
TC226892 similar to UP|Q6IEN1 (Q6IEN1) WRKY transcription factor... 25 6.0
TC215215 homologue to UP|Q8GV24 (Q8GV24) Nucleoside diphosphate ... 25 7.9
>TC227798 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial (58%)
Length = 750
Score = 79.0 bits (193), Expect = 5e-16
Identities = 31/59 (52%), Positives = 42/59 (70%)
Frame = +2
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
+F+I G C C LYL+R G +GW+P VT Y+Y Y PV FYYNTY+P ++ YGF++C
Sbjct: 383 TFEIYGPCTYQTCYLYLYRSGYDGWMPEKVTVYSYYYQPVTFYYNTYIPNDIWYGFDYC 559
>TC229346 similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial (65%)
Length = 783
Score = 70.1 bits (170), Expect = 2e-13
Identities = 30/60 (50%), Positives = 37/60 (61%)
Frame = +1
Query: 3 SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
+F I G C IC +YL+R G +GW P +V Y PV FYYNTY+P + YGFN CN
Sbjct: 430 TFQITGPCAYQICYVYLYRSGLDGWKPESVKINGYNGRPVTFYYNTYIPRDTWYGFNLCN 609
>TC203796 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial (38%)
Length = 824
Score = 57.4 bits (137), Expect = 1e-09
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 3 SFDIVGQCLNDICKLYLHRVGSN-GWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
+F I G C + IC +YL+R G+ GW P +V Y Y PV F +NT +P YG+N C
Sbjct: 373 TFQIDGACASPICYVYLYRSGAEEGWEPQSVKIYGYNSEPVTFDFNTSIPNGTWYGYNLC 552
>TC203836 weakly similar to UP|Q6NPM5 (Q6NPM5) At5g62200, partial (38%)
Length = 816
Score = 57.0 bits (136), Expect = 2e-09
Identities = 25/60 (41%), Positives = 35/60 (57%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFDIVGQCLNDICKLYLHRVGSN-GWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
+F I G C + IC +YL+R G+ GW P +V Y Y P+ F +NT +P YG+N C
Sbjct: 246 TFQIDGACASPICYVYLYRSGAEEGWEPESVKIYGYNSEPITFDFNTSIPNGTWYGYNLC 425
>TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII
type I, chloroplast precursor (CAB) (LHCP) (Fragment),
partial (37%)
Length = 671
Score = 38.5 bits (88), Expect = 7e-04
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 3 SFDIVGQCLNDICKLYLHRVGS-NGWIPTTVTAYNYGYPPV 42
+F I G C + IC +YL+R G+ GW P +V Y Y P+
Sbjct: 128 TFQIDGACASPICYVYLYRSGAEEGWEPESVKIYGYNSEPI 6
>TC210870
Length = 832
Score = 32.3 bits (72), Expect = 0.049
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Frame = +1
Query: 4 FDIVGQCLND-ICKLYLHRVGSNGWIPTTVTAYNYGYPPVK-----------FYYNTYVP 51
F++ C+N IC L+L +G++ W P G+ ++ FY+ +VP
Sbjct: 340 FEVTAPCVNSPICYLFLKLIGNDDWRP--------GFAQIQVLEGSHLSSDYFYFRRFVP 495
Query: 52 ENVDYGFNHCN 62
+V +G + C+
Sbjct: 496 RHVWHGSDVCD 528
>CD404980
Length = 652
Score = 30.4 bits (67), Expect = 0.19
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = -2
Query: 10 CLND-ICKLYLHRVGSNGWIPTTV-------TAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
C+N IC LYL +G++ W P + N Y FY+ +VP +V +G + C
Sbjct: 432 CVNSPICYLYLKLIGNDDWRPGFAQIQVLEGSHLNSDY----FYFRRFVPRHVWHGSDVC 265
Query: 62 N 62
+
Sbjct: 264 D 262
>BI469021 similar to GP|9759176|dbj| contains similarity to
pathogenesis-related genes transcriptional
activator~gene_id:K19E1.9, partial (11%)
Length = 417
Score = 29.3 bits (64), Expect = 0.42
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 29 PTTVTAYNYGYPPVKFYYNTYVPEN 53
P+T+T NY +PP K NT +P++
Sbjct: 82 PSTLTTPNYSFPPKKTLPNTPIPDS 156
>BF597307 similar to SP|Q9FVI1|ADF2 Actin-depolymerizing factor 2 (ADF 2).
[Petunia] {Petunia hybrida}, partial (86%)
Length = 400
Score = 27.7 bits (60), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (59%)
Frame = +1
Query: 1 MVSFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAY 35
MV I G+ L+D+C+L + + GWI + V +Y
Sbjct: 250 MVP*HIKGEELDDLCQLPIQILYGAGWISSRVASY 354
>TC225804 homologue to UP|Q8W4U9 (Q8W4U9) Clathrin assembly protein AP17-like
protein, complete
Length = 811
Score = 26.9 bits (58), Expect = 2.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +1
Query: 28 IPTTVTAYNYGYPPVKFYYNTYVPENVDYGF 58
+P T +Y+Y YP + Y T++ F
Sbjct: 649 VPFTYASYSYSYPVYVYMYKTFIKSGFSVTF 741
>BG790757 similar to GP|10172594|dbj contains similarity to
hemolysin~gene_id:MJG19.2 {Arabidopsis thaliana},
partial (2%)
Length = 413
Score = 26.6 bits (57), Expect = 2.7
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Frame = +1
Query: 17 LYLHRVGSNGW--------IPTTVTAYNYGYPPVKFYYNTYVPE 52
LY+ +VG NGW TTV + P ++Y+++Y +
Sbjct: 190 LYMCKVGENGW*EQV***HNTTTVYLHKLHVPFFQYYFSSYTKD 321
>CA800269 weakly similar to PIR|T04761|T047 chitinase homolog T16H5.160 -
Arabidopsis thaliana, partial (14%)
Length = 434
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +1
Query: 27 WIPTTVTAYNYGYPPVK 43
WIP + Y YPPVK
Sbjct: 151 WIPKFINGLRYRYPPVK 201
>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
Length = 2128
Score = 25.4 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 19 LHRVGSNGWIPTTVTA 34
LHR+G+ W+PT T+
Sbjct: 1456 LHRIGAANWVPTNHTS 1503
>TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete
Length = 1974
Score = 25.4 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 19 LHRVGSNGWIPTTVTA 34
LHR+G+ W+PT T+
Sbjct: 1393 LHRIGTANWVPTNHTS 1440
>CA939014
Length = 427
Score = 25.4 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 29 PTTVTAYNYGYPPV 42
P TVT Y Y +PPV
Sbjct: 294 PPTVTIYGYNFPPV 253
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 25.4 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 19 LHRVGSNGWIPTTVTA 34
LHR+G+ W+PT T+
Sbjct: 1432 LHRIGAANWVPTNHTS 1479
>TC210293 weakly similar to UP|Q9LW35 (Q9LW35) Alcohol dehydrogenase-like
protein, partial (81%)
Length = 1182
Score = 25.4 bits (54), Expect = 6.0
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -1
Query: 9 QCLNDICKLYLH 20
QCL D C+L+LH
Sbjct: 555 QCLEDFCRLFLH 520
>TC226892 similar to UP|Q6IEN1 (Q6IEN1) WRKY transcription factor 51, partial
(47%)
Length = 1269
Score = 25.4 bits (54), Expect = 6.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 29 PTTVTAYNYGYPPV 42
P TVT Y Y +PPV
Sbjct: 1131 PPTVTIYGYNFPPV 1090
>TC215215 homologue to UP|Q8GV24 (Q8GV24) Nucleoside diphosphate kinase ,
complete
Length = 901
Score = 25.0 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +3
Query: 29 PTTVTAYNYGYPPVKFYYNTY 49
P + Y Y +PP FY N Y
Sbjct: 18 PPSAPVYKYPFPPHLFYRNPY 80
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.144 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,005,612
Number of Sequences: 63676
Number of extensions: 53092
Number of successful extensions: 287
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of query: 64
length of database: 12,639,632
effective HSP length: 40
effective length of query: 24
effective length of database: 10,092,592
effective search space: 242222208
effective search space used: 242222208
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC136502.1