BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136472.8 + phase: 0
(182 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204142 homologue to UP|Q9M4Y1 (Q9M4Y1) Actin-like protein, com... 300 3e-82
TC204827 UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete 298 1e-81
TC204150 UP|Q9M729 (Q9M729) Actin, complete 296 4e-81
TC204148 homologue to UP|O81221 (O81221) Actin, complete 295 1e-80
TC204137 homologue to UP|ACTB_ARATH (P53496) Actin 11, complete 295 1e-80
TC204151 UP|ACT4_ARATH (P53494) Actin 4, partial (42%) 293 2e-80
TC204144 homologue to UP|O81221 (O81221) Actin, complete 177 3e-75
CF805722 245 7e-66
TC204152 UP|ACT1_ORYSA (P13362) Actin 1, partial (31%) 243 4e-65
TC204146 UP|ACT1_ORYSA (P13362) Actin 1, partial (30%) 234 1e-62
TC204824 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete 229 4e-61
TC204149 homologue to UP|O81221 (O81221) Actin, partial (93%) 220 3e-58
AI507761 homologue to GP|7960247|gb| actin-like protein {Phalaen... 167 3e-42
TC207055 homologue to UP|Q9LSD6 (Q9LSD6) ARP2 (Actin-related pro... 144 2e-35
BG238255 144 2e-35
AW184908 similar to GP|15144315|gb| actin {Oryza sativa (japonic... 107 4e-24
TC222849 similar to UP|Q84M92 (Q84M92) At1g18450 (Actin-related ... 103 3e-23
AW396932 weakly similar to EGAD|27760|2852 actin RAc2 {Oryza sa... 100 4e-22
TC224059 similar to UP|Q9SAF1 (Q9SAF1) F3F19.20 protein (Actin-r... 86 1e-17
BG154252 similar to SP|P18600|ACT1_ Actin clone 205. [Brine shr... 82 1e-16
>TC204142 homologue to UP|Q9M4Y1 (Q9M4Y1) Actin-like protein, complete
Length = 1696
Score = 300 bits (768), Expect = 3e-82
Identities = 146/146 (100%), Positives = 146/146 (100%)
Frame = +2
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 95 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 274
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 275 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 454
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFNVPAMYVAIQAVLSLYA
Sbjct: 455 MTQIMFETFNVPAMYVAIQAVLSLYA 532
>TC204827 UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete
Length = 1733
Score = 298 bits (762), Expect = 1e-81
Identities = 144/146 (98%), Positives = 145/146 (98%)
Frame = +3
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 213 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 392
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 393 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 572
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFNVPAMYVAIQAVLSLYA
Sbjct: 573 MTQIMFETFNVPAMYVAIQAVLSLYA 650
>TC204150 UP|Q9M729 (Q9M729) Actin, complete
Length = 1566
Score = 296 bits (758), Expect = 4e-81
Identities = 143/146 (97%), Positives = 144/146 (97%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 112 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 291
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 292 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 471
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 472 MTQIMFETFNTPAMYVAIQAVLSLYA 549
>TC204148 homologue to UP|O81221 (O81221) Actin, complete
Length = 1437
Score = 295 bits (754), Expect = 1e-80
Identities = 142/146 (97%), Positives = 143/146 (97%)
Frame = +3
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MAD EDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 111 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 290
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 291 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 470
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 471 MTQIMFETFNTPAMYVAIQAVLSLYA 548
>TC204137 homologue to UP|ACTB_ARATH (P53496) Actin 11, complete
Length = 1559
Score = 295 bits (754), Expect = 1e-80
Identities = 142/146 (97%), Positives = 143/146 (97%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MAD EDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 109 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 288
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 289 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 468
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 469 MTQIMFETFNTPAMYVAIQAVLSLYA 546
>TC204151 UP|ACT4_ARATH (P53494) Actin 4, partial (42%)
Length = 488
Score = 293 bits (751), Expect = 2e-80
Identities = 141/146 (96%), Positives = 143/146 (97%)
Frame = +2
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MAD EDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 8 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 187
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 188 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 367
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 368 MTQIMFETFNTPAMYVAIQAVLSLYA 445
>TC204144 homologue to UP|O81221 (O81221) Actin, complete
Length = 1355
Score = 177 bits (448), Expect(2) = 3e-75
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = +2
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
+SKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 182 KSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 361
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYA 146
MTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 362 MTQIMFETFNAPAMYVAIQAVLSLYA 439
Score = 122 bits (305), Expect(2) = 3e-75
Identities = 58/61 (95%), Positives = 59/61 (96%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAG AGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1 MADAEDIQPLVCDNGTGMVKAGLAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 180
Query: 61 Q 61
Q
Sbjct: 181Q 183
>CF805722
Length = 544
Score = 245 bits (626), Expect = 7e-66
Identities = 117/120 (97%), Positives = 119/120 (98%)
Frame = +3
Query: 27 DAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86
+APRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK
Sbjct: 6 EAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 185
Query: 87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYA
Sbjct: 186 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 365
>TC204152 UP|ACT1_ORYSA (P13362) Actin 1, partial (31%)
Length = 507
Score = 243 bits (620), Expect = 4e-65
Identities = 115/117 (98%), Positives = 116/117 (98%)
Frame = +2
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 155 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 334
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 117
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN
Sbjct: 335 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 505
>TC204146 UP|ACT1_ORYSA (P13362) Actin 1, partial (30%)
Length = 458
Score = 234 bits (598), Expect = 1e-62
Identities = 111/113 (98%), Positives = 112/113 (98%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 118 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 297
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 113
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN
Sbjct: 298 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 456
>TC204824 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete
Length = 1303
Score = 229 bits (585), Expect = 4e-61
Identities = 109/120 (90%), Positives = 111/120 (91%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEA 60
MADAEDIQPLV DNGTGMVKAGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 169 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 348
Query: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLL P PK + K
Sbjct: 349 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLX*GPPQPKGQQRK 528
Score = 77.8 bits (190), Expect = 3e-15
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 109 EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA
Sbjct: 494 EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 607
>TC204149 homologue to UP|O81221 (O81221) Actin, partial (93%)
Length = 1257
Score = 220 bits (561), Expect = 3e-58
Identities = 111/127 (87%), Positives = 114/127 (89%), Gaps = 1/127 (0%)
Frame = +1
Query: 21 AGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN 80
AGFAGDDAPRAVFPSI+GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN
Sbjct: 1 AGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN 180
Query: 81 WDDM-EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQ 139
WDD E + RVAP+EHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 181 WDDTGENLASQLSTMNXRVAPKEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 360
Query: 140 AVLSLYA 146
AVLSLYA
Sbjct: 361 AVLSLYA 381
>AI507761 homologue to GP|7960247|gb| actin-like protein {Phalaenopsis sp.
'True Lady'} [Phalaenopsis cv. 'True Lady'], partial
(37%)
Length = 426
Score = 167 bits (423), Expect = 3e-42
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = +2
Query: 68 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE
Sbjct: 2 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 181
Query: 128 TFNVPAMYVAIQAVLSLYA 146
TFNVPAMYVAIQAVLSLYA
Sbjct: 182 TFNVPAMYVAIQAVLSLYA 238
>TC207055 homologue to UP|Q9LSD6 (Q9LSD6) ARP2 (Actin-related protein 2),
partial (98%)
Length = 1724
Score = 144 bits (363), Expect = 2e-35
Identities = 66/139 (47%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Frame = +1
Query: 10 LVVDNGTGMVKAGFAGDDAPRAVFPSIIGRP--RHTGVMVGMGQKDAYVGDEAQSKRGIL 67
+V DNGTG VK GFAG++ P +VFP ++GRP R+ + KD VG+ R L
Sbjct: 130 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLTEQALKDIVVGEGCADLRHQL 309
Query: 68 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
+ YP+ +GIV NWDDM +W H F+NEL++ P++ +LLT+ PLNP NRE+M + MFE
Sbjct: 310 DISYPVNNGIVQNWDDMCHVWDHAFFNELKINPQDCKILLTDPPLNPSKNREQMVETMFE 489
Query: 128 TFNVPAMYVAIQAVLSLYA 146
+N +++ IQAVL+LYA
Sbjct: 490 KYNFAGVFIQIQAVLTLYA 546
>BG238255
Length = 229
Score = 144 bits (363), Expect = 2e-35
Identities = 67/76 (88%), Positives = 72/76 (94%)
Frame = +2
Query: 7 IQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGI 66
IQPL VDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDE QSK+G+
Sbjct: 2 IQPLCVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDETQSKKGL 181
Query: 67 LTLKYPIEHGIVSNWD 82
LT KY I+HGIV++WD
Sbjct: 182LTFKYSIKHGIVNHWD 229
>AW184908 similar to GP|15144315|gb| actin {Oryza sativa (japonica
cultivar-group)}, partial (14%)
Length = 223
Score = 107 bits (266), Expect = 4e-24
Identities = 53/74 (71%), Positives = 56/74 (75%)
Frame = +2
Query: 2 ADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQ 61
ADAEDIQPLV NGTGMVKAGFA DDAPRA FPSI+GRP HTG+MV M D YV + Q
Sbjct: 2 ADAEDIQPLVSYNGTGMVKAGFAKDDAPRAEFPSIVGRPHHTGMMVRMDHNDPYVLNHTQ 181
Query: 62 SKRGILTLKYPIEH 75
S I TLKYPI H
Sbjct: 182SNNSISTLKYPINH 223
>TC222849 similar to UP|Q84M92 (Q84M92) At1g18450 (Actin-related protein 4),
partial (43%)
Length = 713
Score = 103 bits (258), Expect = 3e-23
Identities = 56/172 (32%), Positives = 92/172 (52%), Gaps = 26/172 (15%)
Frame = +1
Query: 1 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIG---------------------- 38
M +++ +VVD G+ KAG+AG+DAP+AVFPS++G
Sbjct: 64 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDEADNGENNSASAPE 243
Query: 39 ---RPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYN 94
R+ G++ YVG ++ +R + + P + GIV++WD ++ IW H F
Sbjct: 244 SNNNVRNADSDKTKGKRKLYVGSQSLGYRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRE 423
Query: 95 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146
L + P+EHP+LL E N + RE+ ++MFE + PA+++A AVL+ +A
Sbjct: 424 CLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYKAPALFLAKNAVLTSFA 579
>AW396932 weakly similar to EGAD|27760|2852 actin RAc2 {Oryza sativa},
partial (20%)
Length = 283
Score = 100 bits (249), Expect = 4e-22
Identities = 55/94 (58%), Positives = 63/94 (66%)
Frame = +2
Query: 2 ADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQ 61
ADA DIQPL DNGTGMV AG A DDAPRAV P+ +GRP T VM MG+ DAY+GDEA
Sbjct: 2 ADA*DIQPLARDNGTGMVYAGSA*DDAPRAVLPNFVGRPLQTRVMGDMGRNDAYIGDEAP 181
Query: 62 SKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE 95
S+RG TL Y I+ GI S D+ T Y+E
Sbjct: 182SRRGAATL*YRIDLGIASYGADLAYHLSFTDYHE 283
>TC224059 similar to UP|Q9SAF1 (Q9SAF1) F3F19.20 protein (Actin-related
protein 3) (At1g13180), partial (31%)
Length = 554
Score = 85.9 bits (211), Expect = 1e-17
Identities = 50/128 (39%), Positives = 64/128 (49%), Gaps = 18/128 (14%)
Frame = +2
Query: 10 LVVDNGTGMVKAGFAGDDAPRAVFPSIIG---------RPRHTGVMVG------MGQKDA 54
+V+DNG+G K GFAG+ P + P+++ R G V M D
Sbjct: 164 VVIDNGSGYTKMGFAGNVEPCFIAPTVVAVNESFLNQSRGSSKGSWVAQHNAGVMADLDF 343
Query: 55 YVGDEAQSKR---GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 111
++GDEA SK L YPI HG V NWD ME+ W N LR PE+H LLTE+P
Sbjct: 344 FIGDEALSKSRSSSTYNLSYPIRHGQVENWDAMERFWQQCIXNYLRCDPEDHYFLLTESP 523
Query: 112 LNPKANRE 119
L +RE
Sbjct: 524 LTAPESRE 547
>BG154252 similar to SP|P18600|ACT1_ Actin clone 205. [Brine shrimp]
{Artemia sp.}, partial (12%)
Length = 418
Score = 82.0 bits (201), Expect = 1e-16
Identities = 51/121 (42%), Positives = 64/121 (52%)
Frame = +2
Query: 26 DDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85
D A R + +I GRP HTGVM + DAY+ DE + IL L EHG +S+ D
Sbjct: 2 DYASRPTYHNIDGRPHHTGVMPWIDHNDAYMRDEILTGSDILALAPTTEHGCISSCYDWA 181
Query: 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY 145
+ Y+ L E+ LLT E M IMFET+N PAMYVAI+AV +LY
Sbjct: 182 NTMLYERYSALLDLSEKQSELLTGDSRTHCGYIESMRCIMFETYNEPAMYVAIEAVYALY 361
Query: 146 A 146
A
Sbjct: 362 A 364
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,424,788
Number of Sequences: 63676
Number of extensions: 63844
Number of successful extensions: 332
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of query: 182
length of database: 12,639,632
effective HSP length: 91
effective length of query: 91
effective length of database: 6,845,116
effective search space: 622905556
effective search space used: 622905556
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC136472.8