BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136451.5 + phase: 0
(161 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216625 similar to UP|Q9FMM0 (Q9FMM0) Ubiquitin-conjugating enz... 331 8e-92
TC214125 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating e... 87 3e-18
TC214171 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating e... 87 3e-18
TC224833 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugati... 87 3e-18
TC214258 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating e... 87 3e-18
TC225008 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugati... 87 3e-18
TC224894 homologue to GB|AAG40371.1|11762186|AF325019 AT4g27960 ... 86 8e-18
TC224915 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugati... 85 1e-17
TC204571 homologue to UP|Q9SPF9 (Q9SPF9) Ubiquitin-conjugating e... 84 3e-17
TC209199 homologue to UP|Q9SPF9 (Q9SPF9) Ubiquitin-conjugating e... 83 5e-17
TC214275 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating e... 83 5e-17
TC214202 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating e... 83 5e-17
TC214035 UP|Q8LJR9 (Q8LJR9) Ubiquitin-conjugation enzyme, complete 83 6e-17
TC214414 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating e... 82 8e-17
TC214038 UP|Q9M4R0 (Q9M4R0) Ubiquitin conjugating protein, complete 79 1e-15
TC204781 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugati... 78 2e-15
TC204780 similar to UP|O22656 (O22656) Ubiquitin-conjugating enz... 77 4e-15
TC204779 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugati... 77 4e-15
TC204782 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugati... 75 1e-14
TC214042 UP|Q42897 (Q42897) Ubiquitin conjugating enzyme E2, par... 75 1e-14
>TC216625 similar to UP|Q9FMM0 (Q9FMM0) Ubiquitin-conjugating enzyme-like
protein (AT5g42990/MBD2_19), complete
Length = 923
Score = 331 bits (849), Expect = 8e-92
Identities = 154/161 (95%), Positives = 158/161 (97%)
Frame = +2
Query: 1 MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSN 60
MTSSSAA+RK LSKIACNRLQKELVEWQVNPPTGFKH+VTDNLQRWV+EV GAPGTLY+N
Sbjct: 68 MTSSSAAARKNLSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVVEVTGAPGTLYAN 247
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 248 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 427
Query: 121 LSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
LSMLSSST KQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 428 LSMLSSSTTKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 550
>TC214125 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating enzyme E2,
complete
Length = 813
Score = 87.4 bits (215), Expect = 3e-18
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +3
Query: 13 SKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPE 71
S +A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + FP
Sbjct: 102 SSMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPP 281
Query: 72 NYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
+YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 282 DYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 440
>TC214171 homologue to UP|Q42897 (Q42897) Ubiquitin conjugating enzyme E2,
complete
Length = 844
Score = 87.4 bits (215), Expect = 3e-18
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +3
Query: 13 SKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPE 71
S +A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + FP
Sbjct: 153 SSMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPP 332
Query: 72 NYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
+YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 333 DYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 491
>TC224833 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugating enzyme
E2-17 kDa 10/12 (Ubiquitin-protein ligase 10/12)
(Ubiquitin carrier protein 10/12) , complete
Length = 683
Score = 87.4 bits (215), Expect = 3e-18
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Frame = +3
Query: 9 RKTLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQV 67
+K + +A R+ KEL + Q +PPT V +++ W + G P + Y+ + + +
Sbjct: 216 KKKVFAMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTI 395
Query: 68 DFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
FP +YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 396 HFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 566
>TC214258 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating enzyme E2,
complete
Length = 787
Score = 87.4 bits (215), Expect = 3e-18
Identities = 44/116 (37%), Positives = 69/116 (58%), Gaps = 1/116 (0%)
Frame = +1
Query: 11 TLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDF 69
+ S +A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + F
Sbjct: 121 SFSVMASKRIVKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYTGGVFLVSIHF 300
Query: 70 PENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P +YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 301 PPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 465
>TC225008 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugating enzyme
E2-17 kDa 10/12 (Ubiquitin-protein ligase 10/12)
(Ubiquitin carrier protein 10/12) , complete
Length = 938
Score = 87.0 bits (214), Expect = 3e-18
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Frame = +3
Query: 15 IACNRLQKELVEWQVNPPTGFKHR--VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPEN 72
+A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + FP +
Sbjct: 195 MASKRILKELKDLQKDPPTSCSAGPVVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPD 374
Query: 73 YPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSS------ 126
YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 375 YPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 551
Query: 127 ---STAKQRPEDNDRYVKNCRN 145
A D ++Y N R+
Sbjct: 552 LVPEIAHMYKTDRNKYESNARS 617
>TC224894 homologue to GB|AAG40371.1|11762186|AF325019 AT4g27960 {Arabidopsis
thaliana;} , partial (84%)
Length = 911
Score = 85.9 bits (211), Expect = 8e-18
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +3
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + FP +Y
Sbjct: 144 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 323
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 324 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 476
>TC224915 homologue to UP|UBCA_ARATH (P35133) Ubiquitin-conjugating enzyme
E2-17 kDa 10/12 (Ubiquitin-protein ligase 10/12)
(Ubiquitin carrier protein 10/12) , complete
Length = 957
Score = 85.1 bits (209), Expect = 1e-17
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +3
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G P + Y+ + + + FP +Y
Sbjct: 159 MASKRILKELKDLQKDPPTSCSAGPVHEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY 338
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 339 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 491
>TC204571 homologue to UP|Q9SPF9 (Q9SPF9) Ubiquitin-conjugating enzyme UBC2,
complete
Length = 1491
Score = 84.0 bits (206), Expect = 3e-17
Identities = 51/154 (33%), Positives = 77/154 (49%), Gaps = 10/154 (6%)
Frame = +2
Query: 2 TSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSN 60
TS+ + K +A R+ KEL + Q +PP V D++ W + G + Y+
Sbjct: 719 TSNPS*DFKVHLTMASKRITKELKDLQQDPPVSCSAGPVGDDMFHWQATIMGPTDSPYAG 898
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
+ + + FP +YP + P+V F HP+I SNG ICLDIL + WSPA+TVS + +SI
Sbjct: 899 GVFLVTIHFPPDYPFKPPKVSF-RTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSI 1075
Query: 121 LSMLSS---------STAKQRPEDNDRYVKNCRN 145
S+L+ A D D+Y R+
Sbjct: 1076CSLLTDPNPDDPLVPDIAHMYKTDRDKYESTARS 1177
>TC209199 homologue to UP|Q9SPF9 (Q9SPF9) Ubiquitin-conjugating enzyme UBC2,
complete
Length = 746
Score = 83.2 bits (204), Expect = 5e-17
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 12 LSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFP 70
++++A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP
Sbjct: 100 ITQMASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFP 279
Query: 71 ENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
+YP + P+V F HP+I SNG+ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 280 PDYPFKPPKVAF-RTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 441
>TC214275 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating enzyme E2,
complete
Length = 876
Score = 83.2 bits (204), Expect = 5e-17
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 179 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 358
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 359 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 511
>TC214202 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating enzyme E2,
complete
Length = 877
Score = 83.2 bits (204), Expect = 5e-17
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +3
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 186 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 365
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 366 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 518
>TC214035 UP|Q8LJR9 (Q8LJR9) Ubiquitin-conjugation enzyme, complete
Length = 930
Score = 82.8 bits (203), Expect = 6e-17
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 200 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDY 379
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 380 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 532
>TC214414 homologue to UP|Q84YH3 (Q84YH3) Ubiquitin-conjugating enzyme E2,
complete
Length = 803
Score = 82.4 bits (202), Expect = 8e-17
Identities = 41/111 (36%), Positives = 65/111 (57%), Gaps = 1/111 (0%)
Frame = +2
Query: 16 ACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYP 74
A + KEL + Q +PPT + +++ W + G P + Y+ + + + FP +YP
Sbjct: 2 ASKLIVKELKDLQKDPPTSCSSGPLAEDMCHWQATIMGPPDSPYTGGVFLVSIHFPPDYP 181
Query: 75 MEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
+ P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 182 FKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 331
>TC214038 UP|Q9M4R0 (Q9M4R0) Ubiquitin conjugating protein, complete
Length = 759
Score = 78.6 bits (192), Expect = 1e-15
Identities = 51/153 (33%), Positives = 75/153 (48%), Gaps = 10/153 (6%)
Frame = +1
Query: 2 TSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDN-LQRWVIEVGGAPGTLYSN 60
T SS T+S A RL ++ Q +PP G DN + W + G T +
Sbjct: 22 TRSSLPLVATMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDG 201
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
T++L + F E+YP + P V F+ HP+IY++G ICLDIL + WSP V++I SI
Sbjct: 202 GTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSI 378
Query: 121 LSML---------SSSTAKQRPEDNDRYVKNCR 144
S+L +S A+ E+ Y + R
Sbjct: 379 QSLLCDPNPNSPANSEAARMFSENKREYNRRVR 477
>TC204781 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugating enzyme E2
7 (Ubiquitin-protein ligase 7) (Ubiquitin carrier
protein 7) , complete
Length = 894
Score = 78.2 bits (191), Expect = 2e-15
Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Frame = +3
Query: 3 SSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGTLYSN 60
S S +S ++ A LQK+L + NP GF + D N+ W + + G P TLY
Sbjct: 48 SLSLSSISLMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEG 227
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILY-------------DSW 107
+ + FP NYP P V F HP++Y +G +C+ IL+ + W
Sbjct: 228 GFFNAIMSFPPNYPNSPPSVKFTSEL-WHPNVYPDGRVCISILHPPGDDPNGYELASERW 404
Query: 108 SPAMTVSSICISILSMLSS 126
+P TV SI +SI+SMLSS
Sbjct: 405 TPVHTVESIVLSIISMLSS 461
>TC204780 similar to UP|O22656 (O22656) Ubiquitin-conjugating enzyme protein
E2, partial (98%)
Length = 972
Score = 77.0 bits (188), Expect = 4e-15
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Frame = +3
Query: 20 LQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEA 77
LQK+L + NP GF + D N+ W + + G P TLY + + FP NYP
Sbjct: 201 LQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSP 380
Query: 78 PQVIFLHPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSICISILSML 124
P V F HP++Y +G +C+ IL+ + W+P TV SI +SI+SML
Sbjct: 381 PSVKFTSEI-WHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISML 557
Query: 125 SS 126
SS
Sbjct: 558 SS 563
>TC204779 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugating enzyme E2
7 (Ubiquitin-protein ligase 7) (Ubiquitin carrier
protein 7) , complete
Length = 764
Score = 77.0 bits (188), Expect = 4e-15
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Frame = +2
Query: 20 LQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEA 77
LQK+L + NP GF + D N+ W + + G P TLY + + FP NYP
Sbjct: 221 LQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSP 400
Query: 78 PQVIFLHPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSICISILSML 124
P V F HP++Y +G +C+ IL+ + W+P TV SI +SI+SML
Sbjct: 401 PSVKFTSEI-WHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISML 577
Query: 125 SS 126
SS
Sbjct: 578 SS 583
>TC204782 homologue to UP|UBC7_ARATH (Q42540) Ubiquitin-conjugating enzyme E2
7 (Ubiquitin-protein ligase 7) (Ubiquitin carrier
protein 7) , partial (77%)
Length = 444
Score = 75.5 bits (184), Expect = 1e-14
Identities = 48/142 (33%), Positives = 70/142 (48%), Gaps = 18/142 (12%)
Frame = +1
Query: 2 TSSSAASRKTLSKIACNR---LQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGT 56
T + A + +LS +A LQK+L + NP GF + D N+ W + + G P T
Sbjct: 22 TEHNRALQLSLSLMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDT 201
Query: 57 LYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILY------------ 104
LY + + FP NYP P V F HP++Y +G +C+ IL+
Sbjct: 202 LYEGGFFNAIMSFPPNYPNSPPSVKFTSEL-WHPNVYPDGRVCISILHPPGDDPNGYELA 378
Query: 105 -DSWSPAMTVSSICISILSMLS 125
+ W+P TV SI +SI+SMLS
Sbjct: 379 SERWTPVHTVESIVLSIISMLS 444
>TC214042 UP|Q42897 (Q42897) Ubiquitin conjugating enzyme E2, partial (70%)
Length = 523
Score = 75.5 bits (184), Expect = 1e-14
Identities = 38/103 (36%), Positives = 59/103 (56%), Gaps = 1/103 (0%)
Frame = +3
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 213 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDY 392
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSI 116
P + P+V F HP+I SNG ICLDIL + WSPA+T+S +
Sbjct: 393 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKV 518
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,540,585
Number of Sequences: 63676
Number of extensions: 152317
Number of successful extensions: 1029
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of query: 161
length of database: 12,639,632
effective HSP length: 90
effective length of query: 71
effective length of database: 6,908,792
effective search space: 490524232
effective search space used: 490524232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC136451.5