BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136449.11 - phase: 0 /pseudo
(982 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220284 428 e-120
TC205877 similar to UP|Q9FJJ6 (Q9FJJ6) Arabidopsis thaliana geno... 69 1e-11
TC234991 similar to UP|Q6YTC8 (Q6YTC8) Zinc finger (C3HC4-type R... 63 7e-10
BM188726 60 6e-09
BF066654 58 2e-08
TC229054 similar to UP|Q9FKI9 (Q9FKI9) Emb|CAB86085.1, partial (... 57 3e-08
TC230176 similar to UP|Q6H6V3 (Q6H6V3) Zinc finger (C3HC4-type R... 55 2e-07
TC221559 similar to UP|Q9XF50 (Q9XF50) PIT1, partial (26%) 50 4e-06
CA936370 49 1e-05
BF423850 47 5e-05
CO983420 46 9e-05
TC217759 similar to UP|Q6ZG80 (Q6ZG80) Zinc finger (C3HC4-type R... 43 6e-04
BE661694 42 0.001
TC219139 similar to UP|Q9ZT44 (Q9ZT44) RING-H2 finger protein RH... 42 0.001
TC213553 similar to UP|Q6YW60 (Q6YW60) Zinc finger (C3HC4-type R... 42 0.002
BE346259 40 0.007
TC207633 similar to UP|Q94AB7 (Q94AB7) AT5g41350/MYC6_6, partial... 39 0.011
TC218033 similar to UP|Q9FFJ5 (Q9FFJ5) Gb|AAD32776.1 (At5g05830)... 39 0.015
TC233675 similar to UP|Q6YW60 (Q6YW60) Zinc finger (C3HC4-type R... 39 0.015
TC207672 weakly similar to UP|Q9ZT44 (Q9ZT44) RING-H2 finger pro... 38 0.025
>TC220284
Length = 904
Score = 428 bits (1101), Expect = e-120
Identities = 206/226 (91%), Positives = 217/226 (95%)
Frame = +3
Query: 756 IVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTR 815
I+VKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTR
Sbjct: 12 ILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTR 191
Query: 816 LVMLDHMMPLMDESWRVKFERVRDDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARG 875
LVMLDHMMPL+DESWRVKFERVR+DGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLA+G
Sbjct: 192 LVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKG 371
Query: 876 VFPALGYPLVVNSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHN 935
VFP LGYPLV+NSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHN
Sbjct: 372 VFPVLGYPLVINSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHN 551
Query: 936 FGEHVEKANEAATSTGVQDAILLGPNINQQDRDADVGLRLRHINQQ 981
FGEH EKAN A T+TG ++ ILLG +NQQD +ADVGLRLRH+NQQ
Sbjct: 552 FGEHAEKANVAETNTGEKETILLGTGLNQQDHEADVGLRLRHVNQQ 689
>TC205877 similar to UP|Q9FJJ6 (Q9FJJ6) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K19B1 (AT5g62460/K19B1_7),
partial (60%)
Length = 1321
Score = 68.6 bits (166), Expect = 1e-11
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = +2
Query: 15 PIAATTPSSSSPSSSSSSPRGSKGKEIDAEAVATASTAPPSAKYDDDDEDEEDV------ 68
P+A T S PS ++ +DA+A ++ T+P S D + DEE+
Sbjct: 248 PVAQTAQVPSEPSPPPAA--------VDADAAGSSGTSP-SEDCDGEGGDEEEPLIQMAE 400
Query: 69 CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAEN 128
CRIC+ N L PCACSGS+K+ H+ C+ W + CE+C P + P Y
Sbjct: 401 CRICQEEDGVSN-LETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQP--YQPGYTAP 571
Query: 129 APARLP 134
P P
Sbjct: 572 PPRPNP 589
>TC234991 similar to UP|Q6YTC8 (Q6YTC8) Zinc finger (C3HC4-type RING
finger)-like protein, partial (19%)
Length = 524
Score = 62.8 bits (151), Expect = 7e-10
Identities = 30/82 (36%), Positives = 48/82 (57%), Gaps = 3/82 (3%)
Frame = -1
Query: 48 TASTAPPSAKYDDDDEDEEDV---CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWL 104
++S++ S+ DDDD+D V CRIC+ D + PC+C+G++KF H+ C+ +W
Sbjct: 290 SSSSSSSSSNKDDDDDDVVVVVVECRICQEE-DLAQAMEAPCSCNGTLKFAHRKCIQRWC 114
Query: 105 NHSNARQCEVCKHPFSFSPVYA 126
N CE+C +FSP Y+
Sbjct: 113 NKKGNTICEICNQ--AFSPNYS 54
>BM188726
Length = 422
Score = 59.7 bits (143), Expect = 6e-09
Identities = 30/77 (38%), Positives = 40/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 59 DDDDEDEEDV-----CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCE 113
D +E++ED+ CRIC+ N L PCACSG++KF H C+ W CE
Sbjct: 200 DTLEEEKEDLIQMVECRICQEDDTLQN-LDIPCACSGTLKFAHTKCIQLWCYEKGDTICE 376
Query: 114 VCKHPFSFSPVYAENAP 130
+C P F P Y N+P
Sbjct: 377 ICNKP--FKPGYTANSP 421
>BF066654
Length = 394
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/78 (34%), Positives = 43/78 (54%)
Frame = +2
Query: 49 ASTAPPSAKYDDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSN 108
+S++ S+ DDD CRIC+ A + PC+C+G++KF H+ C+ +W N
Sbjct: 86 SSSSSSSSSNKDDDVVVVVECRICQEEDQAQ-AMEAPCSCNGTLKFAHRKCIQRWCNKKG 262
Query: 109 ARQCEVCKHPFSFSPVYA 126
CE+C +FSP Y+
Sbjct: 263 NTICEICNQ--AFSPNYS 310
>TC229054 similar to UP|Q9FKI9 (Q9FKI9) Emb|CAB86085.1, partial (50%)
Length = 1403
Score = 57.4 bits (137), Expect = 3e-08
Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 42/303 (13%)
Frame = +1
Query: 31 SSPRGSKGKEIDAEAVATASTAPPSAKYDDDDE--DEEDVCRICR-NPGDADNPLRYPCA 87
S+PR +G E+ +AT +T + + +E +EE VCRIC + + + C+
Sbjct: 151 STPRVKEGNEL----LATPTTNDTENEDANGEEIAEEEAVCRICLVDLCEGGETFKLECS 318
Query: 88 CSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPV------------------YAENA 129
C G + HQ+C ++W + + C+VCK PV E+
Sbjct: 319 CKGELALAHQECAIKWFSIKGNKTCDVCKEEDRNLPVTLLRIQSVRNRNNGGNRSQLEDV 498
Query: 130 PARLPFQE----FVVGMAMKACHVLQFFV--------RLSFVLSVWLLIIPFITF----- 172
+QE +V M C + Q V +S S L ++ +T
Sbjct: 499 NGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVK 678
Query: 173 --WIWRLAFVRSFGEAQRLFFYHLFTAVILTDCLHGFLLS--ASIVFIFFGGTSLRDYFR 228
+IW A V+ A + F H+F +V+ + LL+ A + G + L +YFR
Sbjct: 679 SRFIWIYASVQF---ALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEYFR 849
Query: 229 HLREIGGQDAEREDEVDRNGARVARRPAGQANRNVNGDANGEDAVAAQGVAGAGQVIRRN 288
R + + R+G ++ + AGQ R N G + + + Q + +N
Sbjct: 850 WRRRVQALSEQ------RHGPQLMPQ-AGQNPRTSNVQRPGPGSGSGLAPSNHSQPVVQN 1008
Query: 289 AEN 291
+N
Sbjct: 1009QQN 1017
>TC230176 similar to UP|Q6H6V3 (Q6H6V3) Zinc finger (C3HC4-type RING finger)
protein-like, partial (28%)
Length = 1247
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 DDDEDEEDVCRICR-NPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHP 118
+D +E+ VCRIC + N LR C+C G + HQDC ++W + + C+VCK
Sbjct: 642 EDIPEEDAVCRICLVELVEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQE 821
Query: 119 FSFSPV 124
PV
Sbjct: 822 VQNLPV 839
>TC221559 similar to UP|Q9XF50 (Q9XF50) PIT1, partial (26%)
Length = 789
Score = 50.4 bits (119), Expect = 4e-06
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = +2
Query: 77 DADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 115
++ L PCACSG++KF H+DC+ W N CE+C
Sbjct: 23 ESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEIC 139
>CA936370
Length = 435
Score = 48.9 bits (115), Expect = 1e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 69 CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCK 116
CRIC + + N + PC+C G++K+ H+ C+ +W N CE+C+
Sbjct: 236 CRICHDEDEESN-MDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQ 376
>BF423850
Length = 322
Score = 46.6 bits (109), Expect = 5e-05
Identities = 23/66 (34%), Positives = 30/66 (44%)
Frame = +2
Query: 69 CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAEN 128
C IC+ N + PCACSG+ K H C+ W ++ CE+C P P Y N
Sbjct: 32 CTICQ*DDSLQN-VDVPCACSGT*KLAHTKCIQLWCYENDDTMCEICAKP--VKPGYTAN 202
Query: 129 APARLP 134
P P
Sbjct: 203 IPVCQP 220
>CO983420
Length = 793
Score = 45.8 bits (107), Expect = 9e-05
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Frame = -3
Query: 77 DADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQ--------------CEVCKHPFSFS 122
+ D+PL PC C+GS+K+VH C+ W+ + Q CE+CKH S
Sbjct: 782 EEDDPLLSPCHCTGSVKYVHLKCIQNWVQSKLSTQEQKNIVTIFWKSLSCELCKHKLSLK 603
Query: 123 PVYAENAPARLPFQE 137
+ + + + F E
Sbjct: 602 YYHNDKEFSLVSFGE 558
>TC217759 similar to UP|Q6ZG80 (Q6ZG80) Zinc finger (C3HC4-type RING finger)
protein-like, partial (72%)
Length = 1362
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/195 (24%), Positives = 77/195 (38%), Gaps = 14/195 (7%)
Frame = +2
Query: 65 EEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSF 121
++ CRIC + G D L PC C G+ K+VH+ CL W + C C+ F
Sbjct: 359 DQPQCRICLDIGGED--LIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVF-- 526
Query: 122 SPVYAENAP-----ARLPFQEFVVGMAMKACHVLQFFVRLSFVLSVWLLIIPFITFWIWR 176
+ N P RL FQ F+V +F+ + L++ F+ +++
Sbjct: 527 --ILRANVPPDRWWLRLKFQ-FLVARDH------------AFIFIIVQLVVAFLGVLVYK 661
Query: 177 LAFVRSFGEAQRLFF------YHLFTAVILTDCLHGFLLSASIVFIFFGGTSLRDYFRHL 230
+G+ R F Y +T +L L G L I I G + + RH
Sbjct: 662 F-----YGDELREMFGYEDHPYGFYTMAVLAIVLVGLLYGFFIAIIC--GQRINE--RHY 814
Query: 231 REIGGQDAEREDEVD 245
+ Q+ +E V+
Sbjct: 815 HVLAKQELTKEYVVE 859
>BE661694
Length = 640
Score = 42.4 bits (98), Expect = 0.001
Identities = 40/157 (25%), Positives = 65/157 (40%), Gaps = 8/157 (5%)
Frame = +3
Query: 52 APPSAKYDDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA-- 109
A PS + E+ CRIC D PC C G+ K+VH++CL W
Sbjct: 144 ADPSEIDLEAGPSEQIQCRICLETDGRD--FIAPCKCKGTSKYVHRECLDHWRAIKEGFA 317
Query: 110 -RQCEVCKHPFSFS-PVYAENAPARLPFQEFVVGMAMKACHVLQFFVRLSFVLS----VW 163
C CK P+ V A+ L F+ FV +L F+ + V++ +
Sbjct: 318 FAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTR------DILFIFLSVQLVIASLAYLV 479
Query: 164 LLIIPFITFWIWRLAFVRSFGEAQRLFFYHLFTAVIL 200
LI + +W+ L +G + FY++ A+++
Sbjct: 480 YLIDGYQQYWLRLL-----WGFDSEMSFYYICGALLV 575
>TC219139 similar to UP|Q9ZT44 (Q9ZT44) RING-H2 finger protein RHB1a, partial
(53%)
Length = 1200
Score = 42.0 bits (97), Expect = 0.001
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Frame = +1
Query: 6 EPPPS-------LDGTPIAATTPSSSSPSSSSSSPRGSKGKEIDAEAVA-TASTAPPSAK 57
+PPP L G+ + + SS +S +E D +A A +A T+P A+
Sbjct: 346 QPPPVPLPYDMVLGGSASTDSESGRETVSSFETSITLEDVEESDCKAQANSAPTSPKKAQ 525
Query: 58 YDDDD------EDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQ 111
+ +EEDVC IC D +NP C H C+L+W+ S++
Sbjct: 526 LSKSNVTQELVTEEEDVCPICLEEYDVENPSNL-TKCE---HHFHLSCILEWMERSDS-- 687
Query: 112 CEVCKHPFSFSP 123
C +C F P
Sbjct: 688 CPICDQEMIF*P 723
>TC213553 similar to UP|Q6YW60 (Q6YW60) Zinc finger (C3HC4-type RING finger)
protein-like, partial (41%)
Length = 1191
Score = 41.6 bits (96), Expect = 0.002
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Frame = +2
Query: 60 DDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCK 116
++ E+ CRIC D N + PC C G+ K+VH++CL W C CK
Sbjct: 68 EEGPSEQIQCRICLET-DGRNFI-VPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCK 241
Query: 117 HPFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFVRLSFVLSVWLLII----PFITF 172
P+ A F+ FV +L F+ + V++ ++ + +
Sbjct: 242 APYHLRVHGAYRQWRTFKFRFFVTR------DILLIFLAVQLVIASLAYLVYQIDGYEKY 403
Query: 173 WIWRLAFVRSFGEAQRLFFYHLFTAVI 199
W+ RL +G L FY++ A++
Sbjct: 404 WL-RLV----WGXXSELSFYYICGALV 469
>BE346259
Length = 459
Score = 39.7 bits (91), Expect = 0.007
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 65 EEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPF 119
E+ CRIC D PC C G+ K+VH++CL W C CK P+
Sbjct: 240 EQIQCRICLETDGRD--FIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPY 407
>TC207633 similar to UP|Q94AB7 (Q94AB7) AT5g41350/MYC6_6, partial (33%)
Length = 825
Score = 38.9 bits (89), Expect = 0.011
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +3
Query: 64 DEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSP 123
+EED C IC DA+NP + C H C+L+W+ S C VC F P
Sbjct: 597 EEEDACPICLEEYDAENP-KLATNCD---HHFHLACILEWMERSET--CPVCDQDLVFDP 758
>TC218033 similar to UP|Q9FFJ5 (Q9FFJ5) Gb|AAD32776.1 (At5g05830), partial
(61%)
Length = 1053
Score = 38.5 bits (88), Expect = 0.015
Identities = 29/112 (25%), Positives = 43/112 (37%), Gaps = 5/112 (4%)
Frame = +3
Query: 9 PSLDGTPIAATTPSSSSPSSSSSSPRGSKGKEIDAEAVATASTAPPSAKYDDDDEDEEDV 68
P + G P + SS+S S + R S EI AK + D
Sbjct: 315 PEVGGVPHSGRASSSASECSVEAETR-SGVPEIKVHL----------AKVEKD------- 440
Query: 69 CRICRNPGDADN-----PLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 115
CRIC ++D+ P++ C+C + H+ C W R CE+C
Sbjct: 441 CRICHMGLESDSHESGAPIQLGCSCKDDLAAAHKHCAEAWFKIKGNRTCEIC 596
>TC233675 similar to UP|Q6YW60 (Q6YW60) Zinc finger (C3HC4-type RING finger)
protein-like, partial (46%)
Length = 438
Score = 38.5 bits (88), Expect = 0.015
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 70 RIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFSPVY 125
RIC + D ++ L PC C G+ +FVH+ CL W + C CK F
Sbjct: 3 RICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVES 182
Query: 126 AE-NAPARLPFQEFV 139
E N ++ F+ FV
Sbjct: 183 IEDNTWRKIKFRLFV 227
>TC207672 weakly similar to UP|Q9ZT44 (Q9ZT44) RING-H2 finger protein RHB1a,
partial (82%)
Length = 1246
Score = 37.7 bits (86), Expect = 0.025
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Frame = +2
Query: 7 PPPSLDGTPIAATTPSSSSPSSSSSSPRGSK---------GKEIDAEAVATASTAPPS-A 56
PPP+ + P+S+ S + GS +E D + A ++ PS A
Sbjct: 338 PPPAPLPYDMVLRGPASTDSESGRETVSGSSFETLITCKDPEESDCKTKANSAPISPSKA 517
Query: 57 KYDDDDE------DEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNAR 110
+ E +EED C IC D +NP + C H C+L+W+ S++
Sbjct: 518 ELSKSKEFHALVTEEEDGCPICLEEYDVENP-KTLTKCE---HHFHLSCILEWMERSDS- 682
Query: 111 QCEVCKHPFSF 121
C +C F
Sbjct: 683 -CPICNQEMIF 712
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,445,295
Number of Sequences: 63676
Number of extensions: 775131
Number of successful extensions: 10673
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 8311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9785
length of query: 982
length of database: 12,639,632
effective HSP length: 106
effective length of query: 876
effective length of database: 5,889,976
effective search space: 5159618976
effective search space used: 5159618976
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC136449.11