TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136287.1 + phase: 1 /partial
         (436 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214097 similar to UP|MTHR_ARATH (O80585) Methylenetetrahydrofo...   834  0.0
BI969716                                                              130  9e-31
TC214176 homologue to UP|Q9SE94 (Q9SE94) Methylenetetrahydrofola...    78  7e-15
AI966734 weakly similar to GP|22040813|gb| chimera1 {synthetic c...    73  3e-13
TC214246 similar to UP|PSAH_SPIOL (P22179) Photosystem I reactio...    41  0.001
TC225737 similar to UP|Q8W4G5 (Q8W4G5) G5bf protein, partial (45%)     29  4.8

>TC214097 similar to UP|MTHR_ARATH (O80585) Methylenetetrahydrofolate reductase
             (MTHFR2) , partial (97%)
          Length = 2285

 Score =  834 bits (2155), Expect = 0.0
 Identities = 397/433 (91%), Positives = 417/433 (95%)
 Frame = +1

Query: 1    AHPDVIGADGLATAEGYQSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC 60
            AHPDVI +DGLAT EGYQ+DLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC
Sbjct: 631  AHPDVIESDGLATPEGYQNDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC 810

Query: 61   PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIM 120
            PIVPGIMPINNYKGFIRMTGFCKTKIPA+IMAALEPIKDNEEAVKAYGIHLGTEMCKKI+
Sbjct: 811  PIVPGIMPINNYKGFIRMTGFCKTKIPADIMAALEPIKDNEEAVKAYGIHLGTEMCKKIL 990

Query: 121  AHGIKTVHLYTLNMEKSALAILTSLGLIEESKISRSLPWRRPTNVFRVKEDVRPIFWANR 180
            AHGI T+HLYTLNMEKSALAIL +LGLIEE+K+SRSLPWRRP NVFRVKEDVRPIFWANR
Sbjct: 991  AHGINTLHLYTLNMEKSALAILMNLGLIEETKVSRSLPWRRPANVFRVKEDVRPIFWANR 1170

Query: 181  PKSYISRTIGWEQYPHGRWSDSGNPSYGALTDYQFMRPRAKDKKLIEEWAVPLKSIEDIY 240
            PKSYISRTIGW+QYPHGRW DS NPSYGAL+DYQFMRPRA+DKKL+EEWAVPLKS+EDIY
Sbjct: 1171 PKSYISRTIGWDQYPHGRWGDSCNPSYGALSDYQFMRPRARDKKLVEEWAVPLKSVEDIY 1350

Query: 241  ERFRLFCLGKLRTNPWSELDGLQPETKIINEHLEKINTKGFLTINSQPAVNGEKSDSPIV 300
            ERFRL+CLGKLR+NPWSELDGLQPETKIINE LEKINTKGFLTINSQPAVNGEKSDSP V
Sbjct: 1351 ERFRLYCLGKLRSNPWSELDGLQPETKIINELLEKINTKGFLTINSQPAVNGEKSDSPTV 1530

Query: 301  GWGGPGGYIYQKAYLEFFCSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSNVGQTDVNAV 360
            GWGGPGGY+YQKAY+EFFCSKEKLDAL++K KDR  LTYMAVNK+G WKSNVGQTDVNAV
Sbjct: 1531 GWGGPGGYVYQKAYVEFFCSKEKLDALVDKCKDRTSLTYMAVNKDGSWKSNVGQTDVNAV 1710

Query: 361  TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEADASRKLVEEVGSSYFLV 420
            TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPE DASRKLVEEVG SYFLV
Sbjct: 1711 TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEGDASRKLVEEVGGSYFLV 1890

Query: 421  SLVDNDYANGDLF 433
            SLVDNDY NGDLF
Sbjct: 1891 SLVDNDYINGDLF 1929


>BI969716 
          Length = 708

 Score =  130 bits (328), Expect = 9e-31
 Identities = 67/101 (66%), Positives = 72/101 (70%)
 Frame = -2

Query: 319 CSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSNVGQTDVNAVTWGVFPAKEIIQPTIVDP 378
           C K    A  +K K R  LTYMAVNK   WK NVGQT  NAVTWGVF  K+II P  VDP
Sbjct: 707 CYKXXXXAXXDKCKARTSLTYMAVNKXESWKYNVGQTYDNAVTWGVFTYKDIIHPPSVDP 528

Query: 379 VSFNVWKDEAFEIWSRGWASLYPEADASRKLVEEVGSSYFL 419
           VS+NV KDEAFE+WSR WASL PE DA RK+VEEVG  YFL
Sbjct: 527 VSYNV*KDEAFEMWSRVWASLSPEGDAXRKVVEEVGGIYFL 405


>TC214176 homologue to UP|Q9SE94 (Q9SE94) Methylenetetrahydrofolate reductase
            , partial (28%)
          Length = 501

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 38/43 (88%), Positives = 39/43 (90%)
 Frame = +3

Query: 21  LAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIV 63
           L  L  +VDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIV
Sbjct: 372 LQSLVIQVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIV 500


>AI966734 weakly similar to GP|22040813|gb| chimera1 {synthetic construct},
           partial (8%)
          Length = 148

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 32/49 (65%), Positives = 38/49 (77%)
 Frame = +2

Query: 303 GGPGGYIYQKAYLEFFCSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSN 351
           GGPGGY +QKAY+EF CS E L AL++K KDR   TYMA +K+G WKSN
Sbjct: 2   GGPGGYAHQKAYVEFLCSNETLHALVDKCKDRTS*TYMAAHKDGSWKSN 148


>TC214246 similar to UP|PSAH_SPIOL (P22179) Photosystem I reaction center
           subunit VI, chloroplast precursor (PSI-H)
           (Light-harvesting complex I 11 kDa protein), partial
           (65%)
          Length = 1056

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 18/21 (85%), Positives = 19/21 (89%)
 Frame = -2

Query: 413 VGSSYFLVSLVDNDYANGDLF 433
           VG S+FLVSLVDNDY NGDLF
Sbjct: 368 VGGSHFLVSLVDNDYINGDLF 306


>TC225737 similar to UP|Q8W4G5 (Q8W4G5) G5bf protein, partial (45%)
          Length = 602

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 14/32 (43%), Positives = 17/32 (52%)
 Frame = -1

Query: 55  QIGITCPIVPGIMPINNYKGFIRMTGFCKTKI 86
           Q G+T   +  I  INN K   R TGF K K+
Sbjct: 524 QYGLTSLCLTSIYVINNIKSLCRETGFYKVKV 429


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,558,310
Number of Sequences: 63676
Number of extensions: 285131
Number of successful extensions: 1133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of query: 436
length of database: 12,639,632
effective HSP length: 100
effective length of query: 336
effective length of database: 6,272,032
effective search space: 2107402752
effective search space used: 2107402752
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)