TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136286.9 - phase: 0 
         (222 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC206692 similar to UP|Q74FE1 (Q74FE1) Ribosomal protein L9, par...   362  e-101
TC206691                                                              245  1e-65
TC206690                                                              145  1e-35
TC203365 similar to UP|RK9_PEA (P11894) 50S ribosomal protein L9...    36  0.012
AW761239 similar to PIR|S04684|R5PM ribosomal protein L9 precurs...    36  0.016
TC203487 similar to UP|RK9_PEA (P11894) 50S ribosomal protein L9...    33  0.10
TC230104 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, parti...    30  1.1
BG352323 weakly similar to EGAD|125688|134 calmodulin-like prote...    28  2.5
TC207550                                                               27  7.3
TC229617 similar to UP|Q9C5S4 (Q9C5S4) CBL-interacting protein k...    27  9.5
TC216073 similar to UP|Q8LD77 (Q8LD77) 6-phosphogluconolactonase...    27  9.5

>TC206692 similar to UP|Q74FE1 (Q74FE1) Ribosomal protein L9, partial (14%)
          Length = 1043

 Score =  362 bits (929), Expect = e-101
 Identities = 176/222 (79%), Positives = 205/222 (92%)
 Frame = +2

Query: 1   MGYLQFGRYSVRQIVRFKDVVNEGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAGET 60
           MGYLQFGR+ VRQ++RF+D   + VVVNPL+YASQGLRY RKLQVILT +IDKLGKAG+T
Sbjct: 194 MGYLQFGRHGVRQVLRFRDASCDNVVVNPLLYASQGLRYKRKLQVILTNDIDKLGKAGDT 373

Query: 61  VKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKE 120
           VKVAPG+FRNHLMPKLLA PNIDKFAYLL EQRKIYQPTEE KQEDV +V ESKED+MKE
Sbjct: 374 VKVAPGYFRNHLMPKLLAFPNIDKFAYLLNEQRKIYQPTEEEKQEDVTLVKESKEDMMKE 553

Query: 121 YERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKNALVAEVARQLCVNITAE 180
           YE+AAL LDKA+LVLRRLI+V+KAK+RESK++PLEL+ PV+K+ LVAEVARQLCVN+  +
Sbjct: 554 YEKAALRLDKAQLVLRRLINVQKAKSRESKEDPLELRYPVTKDTLVAEVARQLCVNVAPD 733

Query: 181 NLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 222
           NLHLP+PLST+GEYEVPLR+PRSIPLPEGK+NW+LKVK+RSK
Sbjct: 734 NLHLPSPLSTLGEYEVPLRIPRSIPLPEGKVNWSLKVKVRSK 859


>TC206691 
          Length = 604

 Score =  245 bits (625), Expect = 1e-65
 Identities = 121/150 (80%), Positives = 138/150 (91%)
 Frame = +2

Query: 73  MPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKEYERAALILDKAK 132
           MPKLLA PNIDKFAYLL EQRKIYQP EE  QEDV +V ESKED+MKEYE+AAL LDKAK
Sbjct: 2   MPKLLAFPNIDKFAYLLNEQRKIYQPIEEENQEDVTLVKESKEDMMKEYEKAALRLDKAK 181

Query: 133 LVLRRLIDVKKAKARESKDEPLELQIPVSKNALVAEVARQLCVNITAENLHLPTPLSTIG 192
           LVLRRLI+V+KAK+RESK++PLEL+ PV+K+ LVAEVARQLCVN+  +NLHLP+PLST+G
Sbjct: 182 LVLRRLINVQKAKSRESKEDPLELRYPVTKDILVAEVARQLCVNVAPDNLHLPSPLSTLG 361

Query: 193 EYEVPLRLPRSIPLPEGKLNWALKVKIRSK 222
           EYEVPLRLPRSIPLPEGK+NW+LKVKIRSK
Sbjct: 362 EYEVPLRLPRSIPLPEGKVNWSLKVKIRSK 451


>TC206690 
          Length = 613

 Score =  145 bits (367), Expect = 1e-35
 Identities = 68/89 (76%), Positives = 84/89 (93%)
 Frame = +3

Query: 134 VLRRLIDVKKAKARESKDEPLELQIPVSKNALVAEVARQLCVNITAENLHLPTPLSTIGE 193
           VLRRLI+V+KAK+RESKD+P EL+ PV+K+ LVAEV+RQ+CVN+  +NLHLP+PL+T+GE
Sbjct: 186 VLRRLINVQKAKSRESKDDPWELRYPVTKDILVAEVSRQICVNVAPDNLHLPSPLATLGE 365

Query: 194 YEVPLRLPRSIPLPEGKLNWALKVKIRSK 222
           YEVPLRLPRSIPLPEGK+NW+LKVKIRSK
Sbjct: 366 YEVPLRLPRSIPLPEGKVNWSLKVKIRSK 452


>TC203365 similar to UP|RK9_PEA (P11894) 50S ribosomal protein L9,
           chloroplast precursor (CL13), partial (98%)
          Length = 983

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 42/157 (26%), Positives = 71/157 (44%)
 Frame = +2

Query: 44  QVILTTNIDKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVK 103
           ++IL  ++  +GK G+ + V  GFFRN+L+P           A L+T Q       +E+K
Sbjct: 185 KIILKEDVAYVGKQGQLLDVKAGFFRNYLLPM--------GKAQLVTPQL-----LKEMK 325

Query: 104 QEDVVVVTESKEDLMKEYERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKN 163
            E+  +  E K  + +E ++ ALI +         +   K K +  K +  ++   V+  
Sbjct: 326 IEEERIEAEKKR-VKEEAQQLALIFE--------TVGAFKVKRKGGKGK--QIFGSVTAQ 472

Query: 164 ALVAEVARQLCVNITAENLHLPTPLSTIGEYEVPLRL 200
            LV  +  QL   +    + LP    T GEY   L+L
Sbjct: 473 DLVDIIKAQLQREVDKRIVDLPEIRET-GEYIAELKL 580


>AW761239 similar to PIR|S04684|R5PM ribosomal protein L9 precursor
           chloroplast - garden pea, partial (36%)
          Length = 336

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 24/69 (34%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
 Frame = +1

Query: 41  RKLQ-VILTTNIDKLGKAGETVKVAPGFFRNHLMP---KLLAVPNIDKFAYLLTEQRKIY 96
           R LQ +IL  ++  +GK G+ + V  GFFRN+L+P     L  P + K   +  E+ +I 
Sbjct: 130 RNLQKIILKEDVAYVGKQGQLLDVKAGFFRNYLLPMGKAQLVTPQLLK--EMKIEEERIE 303

Query: 97  QPTEEVKQE 105
              + VK+E
Sbjct: 304 AEKKRVKEE 330


>TC203487 similar to UP|RK9_PEA (P11894) 50S ribosomal protein L9,
           chloroplast precursor (CL13), partial (42%)
          Length = 466

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 44  QVILTTNIDKLGKAGETVKVAPGFFRNHLMP 74
           ++IL  ++  +GK G+ + V  GFFRN+L+P
Sbjct: 221 KIILKEDVAYVGKQGQLLDVKAGFFRNYLLP 313


>TC230104 similar to UP|Q940U9 (Q940U9) AT5g17440/K3M16_10, partial (24%)
          Length = 763

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/44 (29%), Positives = 27/44 (60%)
 Frame = -3

Query: 164 ALVAEVARQLCVNITAENLHLPTPLSTIGEYEVPLRLPRSIPLP 207
           ++++ ++  + + I+A  + +    +TI ++ VP RLP SIP P
Sbjct: 377 SIISTISIIMPIMISAPTIMVSPSFTTITKFTVPTRLPVSIPTP 246


>BG352323 weakly similar to EGAD|125688|134 calmodulin-like protein
          {Branchiostoma lanceolatum}, partial (41%)
          Length = 340

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 15/37 (40%), Positives = 20/37 (53%)
 Frame = +2

Query: 40 NRKLQVILTTNIDKLGKAGETVKVAPGFFRNHLMPKL 76
          NR LQ+I TT  +K  +  E   + P FF+N    KL
Sbjct: 38 NRTLQLISTTTANKASQPRELGTLMPSFFQNPSNAKL 148


>TC207550 
          Length = 775

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 35 QGLRYNRKLQVILTTNIDKLGKAGETVKVA---PGFFRNHLMPKLLAVPNI 82
          QGL ++  L  IL   I  L +     ++     GF  NHL+P +LAVP +
Sbjct: 20 QGLLWHHHLH*ILCIMIHLLCQKNLKERLDNHHKGFLLNHLLPLVLAVPQL 172


>TC229617 similar to UP|Q9C5S4 (Q9C5S4) CBL-interacting protein kinase 9,
           partial (44%)
          Length = 942

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = +3

Query: 93  RKIYQPTEEVKQEDVVV------VTESKEDLMKEYERAALILDKAKLVLR 136
           +K Y+PT  V++EDV V        +SKE+L+ E +   + ++  +L+ R
Sbjct: 171 KKGYKPTTFVEEEDVNVDDVAAAFNDSKENLVTERKEKPVSMNAFELISR 320


>TC216073 similar to UP|Q8LD77 (Q8LD77) 6-phosphogluconolactonase-like
           protein, partial (58%)
          Length = 1238

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 189 STIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 222
           S +G+ +  ++LP  +  PEG+L W L     SK
Sbjct: 841 SVLGQSQNSVKLPVGLVSPEGELKWFLDKGAASK 942


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,385,801
Number of Sequences: 63676
Number of extensions: 87916
Number of successful extensions: 461
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of query: 222
length of database: 12,639,632
effective HSP length: 94
effective length of query: 128
effective length of database: 6,654,088
effective search space: 851723264
effective search space used: 851723264
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)