BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.5 + phase: 1 /partial
(107 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226118 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, ... 88 6e-19
TC226117 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, ... 88 6e-19
TC208842 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protei... 70 2e-13
TC206855 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protei... 56 2e-09
TC226120 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, ... 44 2e-05
BI786283 40 2e-04
AW234599 33 0.021
TC210383 similar to UP|Q764C1 (Q764C1) Acid phosphatase precurso... 30 0.18
BU578957 30 0.18
TC219162 30 0.23
TC212465 similar to UP|LBD1_ARATH (Q9LQR0) LOB domain protein 1,... 27 1.2
BM093404 27 1.2
TC233676 27 1.5
BI322052 27 1.5
TC219163 27 1.5
TC215669 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 27 1.5
CD394574 weakly similar to PIR|T10862|T108 phaseolin G-box bindi... 27 2.0
TC225926 similar to UP|Q8VWX5 (Q8VWX5) Ribosome-like protein (Fr... 27 2.0
CA819066 26 2.6
CD391123 25 7.5
>TC226118 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, partial
(31%)
Length = 536
Score = 88.2 bits (217), Expect = 6e-19
Identities = 41/65 (63%), Positives = 49/65 (75%)
Frame = +3
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G LP RV+V S+YKGKA L ++P P+F DSG +KISKEG +LLQF P+ G RQYDW
Sbjct: 285 GALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDW 464
Query: 61 NRKQV 65
NRKQV
Sbjct: 465 NRKQV 479
>TC226117 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, partial
(62%)
Length = 1015
Score = 88.2 bits (217), Expect = 6e-19
Identities = 41/65 (63%), Positives = 49/65 (75%)
Frame = +1
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G LP RV+V S+YKGKA L ++P P+F DSG +KISKEG +LLQF P+ G RQYDW
Sbjct: 283 GALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDW 462
Query: 61 NRKQV 65
NRKQV
Sbjct: 463 NRKQV 477
>TC208842 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24,
partial (40%)
Length = 984
Score = 70.1 bits (170), Expect = 2e-13
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Frame = +3
Query: 2 ELPA-RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQ--Y 58
ELP RV+V SVY K VL V+P P+F S SG FK+SKEG ++LQF PS G + Y
Sbjct: 210 ELPQQRVYVGYSVYTRKGVLTVTPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIY 389
Query: 59 DWNRKQV 65
DWN+KQ+
Sbjct: 390 DWNQKQI 410
>TC206855 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24,
partial (19%)
Length = 1078
Score = 56.2 bits (134), Expect = 2e-09
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 6 RVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQ 64
R+ +VYKGKA + P LP FT +SGT + + G +++ F+ S G R+YDW ++Q
Sbjct: 193 RIFAPYTVYKGKAAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQ 369
>TC226120 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, partial
(50%)
Length = 642
Score = 43.5 bits (101), Expect = 2e-05
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = +2
Query: 35 GTFKISKEGLMLLQFVPSAGFRQYDWNRKQV 65
G KISKEG +LLQF G RQYD NRKQV
Sbjct: 11 GAXKISKEGYVLLQFAXXVGTRQYDXNRKQV 103
>BI786283
Length = 421
Score = 40.0 bits (92), Expect = 2e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLL 47
G R+ +VYKGKA + P LP FT DSGT + + G +++
Sbjct: 281 GHASDRIFAPYTVYKGKAAFSLIPCLPTFTKLDSGTVVVDRRGSIMM 421
>AW234599
Length = 416
Score = 33.1 bits (74), Expect = 0.021
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Frame = +1
Query: 65 VSYCSFIIWCWQHIRY--LY--SLEFRFYRC 91
++YC F IWCW IRY LY + FR RC
Sbjct: 271 LAYCIFTIWCWLFIRY*LLYYQQVVFRKLRC 363
>TC210383 similar to UP|Q764C1 (Q764C1) Acid phosphatase precursor, partial
(38%)
Length = 580
Score = 30.0 bits (66), Expect = 0.18
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 4 PARVHVSRSVYKGKAVLV--VSPVLPKFTSSDSGT----FKISKEGLMLLQFVPSAGFRQ 57
P +VH+++ Y GKAV+V V+P P GT FK S EG + A +
Sbjct: 209 PQQVHITQGDYDGKAVIVSWVTPDEPGTRHVQYGTSKDKFKTSAEGTV-------ANYTF 367
Query: 58 YDWNRKQVSYC 68
Y++ + +C
Sbjct: 368 YNYKSGYIHHC 400
>BU578957
Length = 427
Score = 30.0 bits (66), Expect = 0.18
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSD 33
G R+ +VYKGKA + P LP FT D
Sbjct: 239 GHASDRIFAPYTVYKGKAAFSLIPCLPTFTKLD 337
>TC219162
Length = 700
Score = 29.6 bits (65), Expect = 0.23
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 16 GKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G+ VL+ + P F +G F S GLM +Q V GF Y W
Sbjct: 280 GRLVLLPHQLPPIFPVKMTGRFGGSAAGLMDVQCVVEHGFELYSW 414
>TC212465 similar to UP|LBD1_ARATH (Q9LQR0) LOB domain protein 1, partial
(34%)
Length = 411
Score = 27.3 bits (59), Expect = 1.2
Identities = 14/27 (51%), Positives = 16/27 (58%)
Frame = +2
Query: 64 QVSYCSFIIWCWQHIRYLYSLEFRFYR 90
QV YC+ IWC QH + S F FYR
Sbjct: 296 QVYYCTPCIWC*QH-HQVPSGSFLFYR 373
>BM093404
Length = 370
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 72 IWCWQHIRYLYSLEFRFYRCCQ 93
I CWQ + +SL R YRCCQ
Sbjct: 177 IHCWQ-LPLFFSLLQRLYRCCQ 239
>TC233676
Length = 545
Score = 26.9 bits (58), Expect = 1.5
Identities = 10/36 (27%), Positives = 18/36 (49%)
Frame = -3
Query: 71 IIWCWQHIRYLYSLEFRFYRCCQALHIISKRSFFWF 106
++ CW+H+ Y CCQ L I+ + + W+
Sbjct: 321 LLGCWKHVYMYY--------CCQILPIVDQLASQWY 238
>BI322052
Length = 432
Score = 26.9 bits (58), Expect = 1.5
Identities = 12/38 (31%), Positives = 18/38 (46%), Gaps = 3/38 (7%)
Frame = +3
Query: 73 WCWQH---IRYLYSLEFRFYRCCQALHIISKRSFFWFI 107
WCW+ R RF+ CC+ +S++ WFI
Sbjct: 261 WCWRG*G*RR*ELDHYVRFHSCCKFCSRVSRKFLLWFI 374
>TC219163
Length = 895
Score = 26.9 bits (58), Expect = 1.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 16 GKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G+ VL+ + F +G F S GLM +Q V GF Y W
Sbjct: 507 GRLVLLPHQLPLIFLVKMTGRFGGSAAGLMAVQCVVEHGFELYSW 641
>TC215669 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (54%)
Length = 1305
Score = 26.9 bits (58), Expect = 1.5
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = -3
Query: 73 WCWQHIRYLYSLEFR------FYRCCQALHIISKRSFFWF 106
W W+ +L+ L FR F+RCC ++ F WF
Sbjct: 295 WRWRSSNFLFRLLFRFFLFAWFFRCCCFFFLL---LFLWF 185
>CD394574 weakly similar to PIR|T10862|T108 phaseolin G-box binding protein
PG2 - kidney bean (fragment), partial (8%)
Length = 702
Score = 26.6 bits (57), Expect = 2.0
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = +1
Query: 69 SFIIWCWQHIRYLYSLEFRFYRCCQALHIISKRS 102
S + WC+ ++ Y L FY C A +S +S
Sbjct: 553 SILSWCYGYLEYPSFLSSLFYYCLSAAATLSTQS 654
>TC225926 similar to UP|Q8VWX5 (Q8VWX5) Ribosome-like protein (Fragment),
partial (59%)
Length = 1777
Score = 26.6 bits (57), Expect = 2.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 72 IWCWQHIRYLYSLEFRFYRCCQALHI 97
+W ++ I+ L L F+ CC H+
Sbjct: 632 VWSFRQIKLLVQLRFQLLECCLQAHL 555
>CA819066
Length = 112
Score = 26.2 bits (56), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (56%), Gaps = 2/28 (7%)
Frame = +3
Query: 72 IWCWQHIRYLYSLEFRFYR--CCQALHI 97
+W QH+ Y ++ F F+R CC L I
Sbjct: 3 VWFVQHMEYYAAILFFFFRSVCCYGLRI 86
>CD391123
Length = 613
Score = 24.6 bits (52), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 71 IIWCWQHIRYLYSLEF-RFYRCCQALHIISKRSFFWF 106
II+CW H+ + SL + C LHI+ WF
Sbjct: 474 IIFCWLHVTNILSLSWDNILICSILLHILX-----WF 569
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,020,846
Number of Sequences: 63676
Number of extensions: 87999
Number of successful extensions: 927
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of query: 107
length of database: 12,639,632
effective HSP length: 83
effective length of query: 24
effective length of database: 7,354,524
effective search space: 176508576
effective search space used: 176508576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC136286.5