BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.13 + phase: 0
(373 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214700 homologue to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment... 446 e-125
TC206141 homologue to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial ... 372 e-103
TC228159 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment),... 300 7e-82
TC208503 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (56%) 290 6e-79
TC222071 similar to UP|Q40319 (Q40319) Pectate lyase homolog , p... 228 4e-60
BM527695 198 4e-51
BF426188 homologue to GP|11072028|gb F12A21.12 {Arabidopsis thal... 177 7e-45
BE806065 similar to GP|21537059|gb pectate lyase-like protein {A... 170 1e-42
TC234802 similar to GB|AAM61400.1|21537059|AY084835 pectate lyas... 168 3e-42
TC231233 similar to GB|BAA95715.1|7939512|AB024028 pectate lyase... 162 2e-40
TC224238 similar to UP|Q40319 (Q40319) Pectate lyase homolog , p... 142 3e-34
TC229412 similar to GB|AAM19958.1|20466073|AY098948 At5g04300/At... 130 7e-31
TC206142 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (26%) 109 2e-24
TC206140 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (25%) 108 5e-24
TC212843 97 2e-20
AI938216 similar to GP|7547009|gb|A pectate lyase {Vitis vinifer... 96 3e-20
BQ741525 similar to GP|14531294|gb pectate lyase B {Fragaria x a... 90 1e-18
BI974993 similar to PIR|T47653|T47 pectate lyase-like protein - ... 88 7e-18
AW733603 similar to GP|14289169|dbj pectate lyase {Salix gilgian... 72 3e-13
TC234274 weakly similar to GB|AAA32669.1|166443|AMBAI3A antigen ... 60 2e-09
>TC214700 homologue to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), complete
Length = 2119
Score = 446 bits (1146), Expect = e-125
Identities = 212/359 (59%), Positives = 259/359 (72%)
Frame = +3
Query: 15 LGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDLV 74
LG SC NPID CWRCDPNW NRK+LADC GFGR GG+DG YVVTDP D D V
Sbjct: 369 LGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPV 548
Query: 75 NPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQF 134
NP+PGTLRHAV ++ PLWI+F R M I+L QELIM KTIDGRG +V IANGA ITIQF
Sbjct: 549 NPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQF 728
Query: 135 IENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNCRD 194
+ NVIIHG+ I+D +VR S H+G RT++DGD ISIFGSSHIW+DH S+ +C D
Sbjct: 729 VTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCAD 908
Query: 195 GLIDAIMGSTAITISNSHFTDHNEVMLFGASDTYDGDQKMQITVVFNRFGKKLIQRMPRC 254
GL+DA+MGSTAITISN+HFT HNEV+L G SD+Y D+ MQ+T+ +N FG+ LIQRMPRC
Sbjct: 909 GLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRC 1088
Query: 255 RFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKEITKRTLVPEAEWKTW 314
R G+ HV+NN Y WEMYAIGG+ +PTI S+GN++ AP N AKE+TKR E +WK W
Sbjct: 1089RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNPFAKEVTKRVETAETQWKGW 1268
Query: 315 QWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC 373
WRS DL LNGA+F SGA + ++ + AK S V +T + +L C+ G+ C
Sbjct: 1269NWRSEGDLLLNGAYFTPSGAG-ASASYARASSLGAKSSSMVDSMTSNAGALGCKRGRQC 1442
>TC206141 homologue to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (65%)
Length = 990
Score = 372 bits (955), Expect = e-103
Identities = 173/274 (63%), Positives = 208/274 (75%)
Frame = +3
Query: 9 RRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDP 68
RRNL G SC + NPID CWRCDPNW NR++LADC GFG+ GG+DG IYVV D
Sbjct: 177 RRNL---GYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVEDD 347
Query: 69 SDSDLVNPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGA 128
D D VNP+PGTLRHAV ++ PLWIIFAR M I+L +EL+M KTIDGRGA V +A G
Sbjct: 348 GDDDAVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGP 527
Query: 129 GITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVS 188
ITIQ++ NVIIHGI I+D G +VRDS HYG RT+SDGDG+SIFG SH+W+DH S
Sbjct: 528 CITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCS 707
Query: 189 MRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDTYDGDQKMQITVVFNRFGKKLI 248
+ NC DGLIDAI GSTAITISN++ T H++VML G SD+Y D+ MQ+T+ FN FG+ L+
Sbjct: 708 LSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLV 887
Query: 249 QRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTI 282
QRMPRCR G+ HV+NN Y WEMYAIGG+ +PTI
Sbjct: 888 QRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTI 989
>TC228159 similar to UP|Q94FT5 (Q94FT5) Pectate lyase (Fragment), partial
(68%)
Length = 1365
Score = 300 bits (768), Expect = 7e-82
Identities = 146/253 (57%), Positives = 181/253 (70%)
Frame = +2
Query: 121 DVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSS 180
+V IA GA ITIQF+ NVIIHG+ I+D V +VR S HYG RT++DGDGISIFGSS
Sbjct: 5 NVHIAYGACITIQFVTNVIIHGLHIHDCKVTGNAMVRSSPSHYGWRTLADGDGISIFGSS 184
Query: 181 HIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDTYDGDQKMQITVVF 240
HIWIDH S+ NC DGL+DA+MGSTAITISN++FT HNEVML G SD+Y D++MQ+T+ +
Sbjct: 185 HIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAY 364
Query: 241 NRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKEI 300
N FG+ LIQRMPRCR G+ HV+NN Y W MYAIGG+ +PTI S+GN+++AP N AKE+
Sbjct: 365 NHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPLNPFAKEV 544
Query: 301 TKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTR 360
TKR + WK+W WRS DL LNGAFF SGA ++ + AK S VG +T
Sbjct: 545 TKRVDTGSSVWKSWNWRSEGDLLLNGAFFTSSGAGAA-ASYARASSLGAKSSSLVGTITS 721
Query: 361 YSRSLRCRVGKPC 373
+ L CR G C
Sbjct: 722 GAGVLNCRRGAMC 760
>TC208503 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (56%)
Length = 808
Score = 290 bits (743), Expect = 6e-79
Identities = 140/219 (63%), Positives = 163/219 (73%)
Frame = +1
Query: 9 RRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDP 68
RRNL G SC NPID CWRCDPNW NR++LADC GFG+ GGK+G IYVVTD
Sbjct: 160 RRNL---GYLSCATGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDS 330
Query: 69 SDSDLVNPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGA 128
D D V P+PGTLR+AV ++ PLWIIFAR M I+L +ELIM KTIDGRGA V IA G
Sbjct: 331 GDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGP 510
Query: 129 GITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVS 188
ITIQ++ NVIIHGI I+D G +VRDS HYG RTISDGDG+SIFG SH+W+DH S
Sbjct: 511 CITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCS 690
Query: 189 MRNCRDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDT 227
+ NC DGLIDAI GST ITISN++ T H++VML G SD+
Sbjct: 691 LSNCNDGLIDAIHGSTGITISNNYMTHHDKVMLLGHSDS 807
>TC222071 similar to UP|Q40319 (Q40319) Pectate lyase homolog , partial (34%)
Length = 609
Score = 228 bits (580), Expect = 4e-60
Identities = 103/159 (64%), Positives = 126/159 (78%)
Frame = +3
Query: 16 GNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDLVN 75
G C A+NPID CWRC+ +WAN+R +LA C +GFGR+ TGG GPIYVVTD SD D+VN
Sbjct: 132 GGGKCQASNPIDACWRCNKDWANDRFRLAKCGKGFGRRATGGLGGPIYVVTDNSDDDMVN 311
Query: 76 PRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQFI 135
P+PGT+RHAVT+ GPLWIIF SM I L QEL+++ +KTIDGRGA+V GAG+TIQF+
Sbjct: 312 PKPGTIRHAVTQKGPLWIIFGHSMIISLRQELMISSDKTIDGRGANVQFRGGAGLTIQFV 491
Query: 136 ENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGI 174
NVIIHG++I DI+ GG++RDS DHYGLRT SDGD I
Sbjct: 492 NNVIIHGVRIKDIVPKDGGMIRDSADHYGLRTRSDGDAI 608
>BM527695
Length = 421
Score = 198 bits (503), Expect = 4e-51
Identities = 93/139 (66%), Positives = 116/139 (82%)
Frame = +2
Query: 97 RSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLV 156
RSM I+LNQEL+++ +KTIDGRGA+V +GAG+TIQF+ NVIIHG++I +I+ GG++
Sbjct: 5 RSMMIKLNQELMISSDKTIDGRGANVVFRDGAGLTIQFVNNVIIHGVRIKNIVPKEGGMI 184
Query: 157 RDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDH 216
RDS +H GLRT SDGD ISIFG+S++WIDHVS+ NC DGLID I GSTAITISN H T H
Sbjct: 185 RDSYNHVGLRTKSDGDAISIFGASNVWIDHVSLSNCADGLIDVIQGSTAITISNCHMTKH 364
Query: 217 NEVMLFGASDTYDGDQKMQ 235
N+VMLFGASD+Y GD+ MQ
Sbjct: 365 NDVMLFGASDSYSGDKIMQ 421
>BF426188 homologue to GP|11072028|gb F12A21.12 {Arabidopsis thaliana},
partial (30%)
Length = 362
Score = 177 bits (449), Expect = 7e-45
Identities = 77/117 (65%), Positives = 93/117 (78%)
Frame = +1
Query: 157 RDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNCRDGLIDAIMGSTAITISNSHFTDH 216
RDS HYG RT+SDGDG+SIFG SH+W+DH S+ NCRDGLIDAI GST ITISN++ T H
Sbjct: 10 RDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTGITISNNYLTHH 189
Query: 217 NEVMLFGASDTYDGDQKMQITVVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYA 273
N+VML G SDT+ D+ MQ+T+ FN FG+ L+QRMPRCR G+ HV+NN Y W MYA
Sbjct: 190 NKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYA 360
>BE806065 similar to GP|21537059|gb pectate lyase-like protein {Arabidopsis
thaliana}, partial (28%)
Length = 414
Score = 170 bits (430), Expect = 1e-42
Identities = 83/138 (60%), Positives = 98/138 (70%)
Frame = +1
Query: 60 GPIYVVTDPSDSDLVNPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRG 119
G Y+VTD SD D VNP+PGTLR+AV +N PLWI+F +M I+L+QELI KTIDGRG
Sbjct: 1 GQFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRG 180
Query: 120 ADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGS 179
ADV I G IT+Q+I NVIIH I I+ VR S +HYG RT SDGDGISIFGS
Sbjct: 181 ADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGS 360
Query: 180 SHIWIDHVSMRNCRDGLI 197
IWIDH ++ C+DGLI
Sbjct: 361 RDIWIDHCTLSRCKDGLI 414
>TC234802 similar to GB|AAM61400.1|21537059|AY084835 pectate lyase-like
protein {Arabidopsis thaliana;} , partial (30%)
Length = 554
Score = 168 bits (426), Expect = 3e-42
Identities = 78/151 (51%), Positives = 99/151 (64%)
Frame = +3
Query: 14 GLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDL 73
G+ +SSC+ NPID CWRCD NWA +R+KLA+C GFG+ GGK G IY+VTD SD D
Sbjct: 99 GMSSSSCLTGNPIDDCWRCDQNWAADRQKLAECGLGFGKYAMGGKGGQIYIVTDSSDRDP 278
Query: 74 VNPRPGTLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQ 133
NP PGTLRHAV ++ PLWI+FA M I L ELI KT+DGRGA+V + IT+Q
Sbjct: 279 ANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSYKTLDGRGANVHVTGHGCITLQ 458
Query: 134 FIENVIIHGIKIYDIMVGSGGLVRDSEDHYG 164
++ N+IIH I ++ +R S H G
Sbjct: 459 YVSNIIIHNIHVHHCTPSGNTNIRASPTHVG 551
>TC231233 similar to GB|BAA95715.1|7939512|AB024028 pectate lyase-like
protein {Arabidopsis thaliana;} , partial (34%)
Length = 614
Score = 162 bits (410), Expect = 2e-40
Identities = 72/142 (50%), Positives = 99/142 (69%)
Frame = +2
Query: 232 QKMQITVVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIA 291
+ MQ+T+ FN FG+ L+QRMPRCR G+ HV+NN Y WEMYAIGG+ +PTI S+GN+F+A
Sbjct: 5 EDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLA 184
Query: 292 PNNGHAKEITKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKP 351
PN +KE+TK P++EW W WRS D++LNGA+FRQSGA + ++ + A+P
Sbjct: 185 PNIRFSKEVTKHEDAPQSEWMGWNWRSEGDMFLNGAYFRQSGAG-ASSSYARASSLSARP 361
Query: 352 GSYVGRLTRYSRSLRCRVGKPC 373
S VG +T + +L CR G C
Sbjct: 362 SSLVGSMTTTAGALTCRKGNRC 427
>TC224238 similar to UP|Q40319 (Q40319) Pectate lyase homolog , partial (27%)
Length = 512
Score = 142 bits (357), Expect = 3e-34
Identities = 67/126 (53%), Positives = 86/126 (68%)
Frame = +1
Query: 248 IQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKEITKRTLVP 307
+QRMPRCR+GF+HVLNN Y W MYAIGG+ PTI+S+GN+FIAPNN AK IT R
Sbjct: 1 VQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNNAAKLITHRDYAE 180
Query: 308 EAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRC 367
WK WQW+S DL++NGA F SG+ I + ++K + G++ RLTR S +L C
Sbjct: 181 PQVWKNWQWQSEMDLFINGAQFIPSGSP-IKTTYKKGLLMKPRDGTHASRLTRNSGALNC 357
Query: 368 RVGKPC 373
VG+PC
Sbjct: 358 IVGRPC 375
>TC229412 similar to GB|AAM19958.1|20466073|AY098948 At5g04300/At5g04300
{Arabidopsis thaliana;} , partial (37%)
Length = 925
Score = 130 bits (328), Expect = 7e-31
Identities = 59/125 (47%), Positives = 85/125 (67%)
Frame = +2
Query: 238 VVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAPNNGHA 297
+ FN FG+ L+QRMPRCR G+IHV+NN + +W+MYAIGG+ +PTI S+GN++ AP + A
Sbjct: 8 IAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWKMYAIGGSANPTINSQGNRYTAPADPDA 187
Query: 298 KEITKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGR 357
KE+TKR + EW W WR+ D+ +NGAFF SGA + ++ ++AK + +
Sbjct: 188 KEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGQ-SAQYAEATSVQAKSAVQIDQ 364
Query: 358 LTRYS 362
LT YS
Sbjct: 365 LTMYS 379
>TC206142 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (26%)
Length = 723
Score = 109 bits (273), Expect = 2e-24
Identities = 51/108 (47%), Positives = 70/108 (64%)
Frame = +3
Query: 266 YNRWEMYAIGGTMHPTIISEGNKFIAPNNGHAKEITKRTLVPEAEWKTWQWRSINDLYLN 325
Y WEMYAIGG+ +PTI S+GN+F+AP++ +KE+TK E+EWK W WRS DL +N
Sbjct: 18 YTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWKGWNWRSEGDLLVN 197
Query: 326 GAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC 373
GAFF SGA + ++ + A+P S VG +T + +L CR G C
Sbjct: 198 GAFFTASGAG-ASSSYARASSLSARPSSLVGSITTGAGALTCRKGSRC 338
>TC206140 similar to UP|Q6U7H9 (Q6U7H9) Pectate lyase, partial (25%)
Length = 683
Score = 108 bits (269), Expect = 5e-24
Identities = 50/105 (47%), Positives = 69/105 (65%)
Frame = +2
Query: 269 WEMYAIGGTMHPTIISEGNKFIAPNNGHAKEITKRTLVPEAEWKTWQWRSINDLYLNGAF 328
WEMYA GG+ +PTI S+GN+F+AP++ +KE+TK PE+EWK W WRS DL +NGAF
Sbjct: 2 WEMYAXGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAF 181
Query: 329 FRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC 373
F SGA + ++ + A+P S VG +T + +L CR G C
Sbjct: 182 FTASGAG-ASSSYARASSLSARPSSLVGSITTGAGALSCRKGSRC 313
>TC212843
Length = 459
Score = 96.7 bits (239), Expect = 2e-20
Identities = 42/59 (71%), Positives = 50/59 (84%)
Frame = -3
Query: 315 QWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC 373
QWRSIND YLNG FFR+ GA+L +RP+S DM+ A+PGSYVGRLTRY+ SL+C VGKPC
Sbjct: 457 QWRSINDEYLNGGFFREGGAQLTDRPYSRHDMMTARPGSYVGRLTRYAGSLKCMVGKPC 281
>AI938216 similar to GP|7547009|gb|A pectate lyase {Vitis vinifera}, partial
(24%)
Length = 343
Score = 95.5 bits (236), Expect = 3e-20
Identities = 43/98 (43%), Positives = 64/98 (64%)
Frame = +1
Query: 276 GTMHPTIISEGNKFIAPNNGHAKEITKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAE 335
G+ +PTI +GN+F+AP++ +KE+TKR PE+EW+ W WRS DL +NGAFF SGA
Sbjct: 7 GSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQDWNWRSEGDLLVNGAFFTSSGAG 186
Query: 336 LINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCRVGKPC 373
+ ++ + A+P S VG +T + +L C+ G PC
Sbjct: 187 AXS-SYARASSLSARPSSLVGSITTGAGALSCKKGSPC 297
>BQ741525 similar to GP|14531294|gb pectate lyase B {Fragaria x ananassa},
partial (25%)
Length = 430
Score = 90.1 bits (222), Expect = 1e-18
Identities = 43/78 (55%), Positives = 49/78 (62%)
Frame = +2
Query: 3 IGGINGRRNLVGLGNSSCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPI 62
I RRNL SC + NPID CWRCD W RK+LA+C GFGR GG+DG
Sbjct: 206 IRNYTARRNL---NFFSCGSGNPIDDCWRCDKRWYARRKRLANCGIGFGRNAIGGRDGRY 376
Query: 63 YVVTDPSDSDLVNPRPGT 80
YVV+DP D D VNP+PGT
Sbjct: 377 YVVSDPGDDDPVNPKPGT 430
>BI974993 similar to PIR|T47653|T47 pectate lyase-like protein - Arabidopsis
thaliana, partial (41%)
Length = 424
Score = 87.8 bits (216), Expect = 7e-18
Identities = 62/159 (38%), Positives = 81/159 (49%), Gaps = 1/159 (0%)
Frame = +3
Query: 41 KKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDLVNPRPGTLRHAVTRNGPLWIIFARSMK 100
+ LA +GFGR GG GP+Y VT SD PG+LR R PLWI+F S
Sbjct: 6 RALAGRAEGFGRLAIGGLHGPLYFVTTLSDDG-----PGSLREGCRRKEPLWIVFEVSGT 170
Query: 101 IRLNQELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSE 160
I L+ L ++ KTIDGRG V + G G+ ++ E++II ++ GG
Sbjct: 171 IHLSSYLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHIIICNLEF------EGG-----R 314
Query: 161 DHYGLRTISDGDGISIF-GSSHIWIDHVSMRNCRDGLID 198
H D DGI I S HIWID ++R+ DGLID
Sbjct: 315 GH-------DVDGIQIKPNSRHIWIDRCTLRDYDDGLID 410
>AW733603 similar to GP|14289169|dbj pectate lyase {Salix gilgiana}, partial
(21%)
Length = 262
Score = 72.4 bits (176), Expect = 3e-13
Identities = 35/87 (40%), Positives = 54/87 (61%)
Frame = +2
Query: 284 SEGNKFIAPNNGHAKEITKRTLVPEAEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSN 343
S+GN+F+AP++ +KE+TK E+EWK W WRS DL +NGAFF SGA + ++
Sbjct: 5 SQGNRFVAPDDRFSKEVTKHEDAAESEWKGWNWRSEGDLLVNGAFFTASGAGAYS-SYAR 181
Query: 344 KDMIKAKPGSYVGRLTRYSRSLRCRVG 370
++ A P VG ++ + +L C+ G
Sbjct: 182 PSILIATPS*LVGDISTGAGALTCKNG 262
>TC234274 weakly similar to GB|AAA32669.1|166443|AMBAI3A antigen E {Ambrosia
artemisiifolia;} , partial (5%)
Length = 415
Score = 59.7 bits (143), Expect = 2e-09
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +1
Query: 309 AEWKTWQWRSINDLYLNGAFFRQSGAELINRPFSNKDMIKAKPGSYVGRLTRYSRSLRCR 368
A K WQW+S DL++NGA F SG+ I + ++K + G++V RLTR++ +L C
Sbjct: 1 ARGKNWQWQSEMDLFMNGAKFVTSGSP-IKMTYKKGLIMKPRDGTHVSRLTRHAGALNCF 177
Query: 369 VGKPC 373
VGKPC
Sbjct: 178 VGKPC 192
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,646,413
Number of Sequences: 63676
Number of extensions: 221440
Number of successful extensions: 1181
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of query: 373
length of database: 12,639,632
effective HSP length: 99
effective length of query: 274
effective length of database: 6,335,708
effective search space: 1735983992
effective search space used: 1735983992
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC136286.13