BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136142.6 + phase: 0
(147 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding f... 189 5e-49
TC215677 similar to GB|AAS10009.1|41619040|AY519539 MYB transcri... 139 5e-34
CA936268 113 4e-26
BU578344 98 2e-21
TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, par... 96 6e-21
TC206558 similar to GB|AAS10008.1|41619036|AY519538 MYB transcri... 94 2e-20
TC206560 similar to GB|AAS10008.1|41619036|AY519538 MYB transcri... 92 1e-19
TC207565 similar to UP|Q6T804 (Q6T804) ANTHER INDEHISCENCE1, par... 55 1e-08
AW156424 46 6e-06
CD396493 similar to GP|26450818|dbj myb like protein {Arabidopsi... 44 2e-05
TC210810 similar to UP|Q6R0E4 (Q6R0E4) MYB transcription factor,... 43 6e-05
TC220514 40 4e-04
TC218983 similar to UP|Q94AX9 (Q94AX9) At1g72650/F28P22_16 (MYB ... 40 5e-04
TC229681 UP|Q9S7E3 (Q9S7E3) GmMYB29A1 protein, complete 38 0.002
TC229682 UP|Q9XIU9 (Q9XIU9) GmMYB29A2 protein, complete 38 0.002
TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), par... 36 0.006
TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%) 35 0.010
TC207566 similar to UP|Q761Y7 (Q761Y7) BRI1-KD interacting prote... 35 0.010
TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete 35 0.010
TC214351 similar to UP|Q08707 (Q08707) BPF-1 protein, partial (28%) 35 0.013
>TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding factor 2,
partial (54%)
Length = 1493
Score = 189 bits (479), Expect = 5e-49
Identities = 96/134 (71%), Positives = 105/134 (77%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWTAEEEAALKAGV+KHGAGKWRTIL DPEFS+IL RSNVDLKDKWRNINVTA
Sbjct: 229 MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTA 408
Query: 61 IWGSRQKAKLALKNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGGTFQSPKPLTICS 120
IWGSRQKAKLALK + PAPK DNN +AL VV+ ++ LD KPL +SG
Sbjct: 409 IWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSG------------- 549
Query: 121 GTLQSPNSKEQVSR 134
G LQS N KEQ+SR
Sbjct: 550 GPLQSTNLKEQISR 591
>TC215677 similar to GB|AAS10009.1|41619040|AY519539 MYB transcription factor
{Arabidopsis thaliana;} , partial (61%)
Length = 1239
Score = 139 bits (350), Expect = 5e-34
Identities = 69/117 (58%), Positives = 85/117 (71%), Gaps = 2/117 (1%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWTAEEE ALKAGVVKHG GKWRTIL DPEFSS+L RSNVDLKDKWRN++V A
Sbjct: 141 MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMA 320
Query: 61 I-WGSRQKAKLALKNSPPAPKTDNNQLALGKVV-QREDFLDIKPLTISGGTFQSPKP 115
W SR+K++L+++ P+ D N +A+ V E+ +D+KPL +S P P
Sbjct: 321 NGWSSREKSRLSVRRVHQVPRQDENSMAITAVAPSDEEIVDVKPLQVSRDMVHIPGP 491
>CA936268
Length = 450
Score = 113 bits (282), Expect = 4e-26
Identities = 54/69 (78%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWTAEEE ALKAGVVKHG GKWRTIL DPEFS +L RSNVDLKDKWRN++V A
Sbjct: 135 MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMA 314
Query: 61 I-WGSRQKA 68
W SR+K+
Sbjct: 315 NGWSSREKS 341
>BU578344
Length = 438
Score = 97.8 bits (242), Expect = 2e-21
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDL 49
MGAPKQKWTAEEEAALKAGVVKHGAGKWRTIL DPEFSSILR RSNVDL
Sbjct: 292 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDL 438
>TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, partial (35%)
Length = 750
Score = 95.9 bits (237), Expect = 6e-21
Identities = 54/93 (58%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Frame = +1
Query: 50 KDKWRNINVTAIWGSRQKAKLAL-KNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGG 108
+DKWRNINVTAIWGSRQKAKLAL KN P+ K DNN LAL VVQR+
Sbjct: 7 QDKWRNINVTAIWGSRQKAKLALKKNLLPSTKIDNNHLALSTVVQRDK------------ 150
Query: 109 TFQSPKPLTICSGTLQSPNSKEQVSRFKNFQLN 141
+PKPL + SGT SPNSKE++S+ +NFQL+
Sbjct: 151 EVANPKPLAVSSGT--SPNSKEKISKLQNFQLD 243
>TC206558 similar to GB|AAS10008.1|41619036|AY519538 MYB transcription factor
{Arabidopsis thaliana;} , partial (38%)
Length = 670
Score = 94.4 bits (233), Expect = 2e-20
Identities = 47/83 (56%), Positives = 60/83 (71%), Gaps = 4/83 (4%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVT- 59
MG KQKWT +EE AL AGV KHG GKW+ IL DP+F+ L +RSN+DLKDKWRN++V+
Sbjct: 57 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSN 236
Query: 60 AIWGSRQKA---KLALKNSPPAP 79
GS++K+ KL +PPAP
Sbjct: 237 GAQGSKEKSRVPKLKALPAPPAP 305
>TC206560 similar to GB|AAS10008.1|41619036|AY519538 MYB transcription factor
{Arabidopsis thaliana;} , partial (38%)
Length = 971
Score = 91.7 bits (226), Expect = 1e-19
Identities = 56/159 (35%), Positives = 86/159 (53%), Gaps = 18/159 (11%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVT- 59
MG KQKWT +EE AL AGV KHG GKW+ IL DP+F+ L +RSN+DLKDKWRN++V+
Sbjct: 73 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSN 252
Query: 60 AIWGSRQKAKL-----------------ALKNSPPAPKTDNNQLALGKVVQREDFLDIKP 102
GS++K+++ +N+ PAP++ ++ A+ + D P
Sbjct: 253 GAQGSKEKSRVPKPKAFSAPPATTATTATPQNASPAPQSASSDAAVAPDASQNDQDAKNP 432
Query: 103 LTISGGTFQSPKPLTICSGTLQSPNSKEQVSRFKNFQLN 141
+ F++ L +G+ N+ + KN Q+N
Sbjct: 433 PRYNALIFEALSALKDSNGS--DMNAIIKFMEQKNHQVN 543
>TC207565 similar to UP|Q6T804 (Q6T804) ANTHER INDEHISCENCE1, partial (9%)
Length = 1083
Score = 55.1 bits (131), Expect = 1e-08
Identities = 27/52 (51%), Positives = 34/52 (64%)
Frame = +2
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNI 56
K+KW++ EE L+AGV G G W TI +S+I RS VDLKDKWRN+
Sbjct: 524 KRKWSSLEEETLRAGVKMFGEGNWATI--RSFYSNIFENRSGVDLKDKWRNM 673
>AW156424
Length = 304
Score = 46.2 bits (108), Expect = 6e-06
Identities = 22/34 (64%), Positives = 28/34 (81%)
Frame = +3
Query: 112 SPKPLTICSGTLQSPNSKEQVSRFKNFQLNTSAI 145
+PKPL + SGT SPNSKE++S+ +NFQLN SAI
Sbjct: 21 NPKPLAVSSGT--SPNSKEKISKLQNFQLNISAI 116
>CD396493 similar to GP|26450818|dbj myb like protein {Arabidopsis thaliana},
partial (7%)
Length = 498
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/55 (50%), Positives = 31/55 (55%), Gaps = 6/55 (10%)
Frame = -2
Query: 8 WTAEEEAALKAGVVKHGAGK----WRTILMDPEFSSIL--RTRSNVDLKDKWRNI 56
WTAEEE LK GV K WR IL EF + TR+ VDLKDKW+NI
Sbjct: 392 WTAEEEKVLKEGVSKFSTENQNIPWRKIL---EFGCRVFDETRTPVDLKDKWKNI 237
>TC210810 similar to UP|Q6R0E4 (Q6R0E4) MYB transcription factor, partial
(5%)
Length = 1109
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 6 QKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNI 56
++W+ EE K V K G GKW+ LM I + R+ VDL DKWR++
Sbjct: 798 KRWSQLEEETRKTAVDKFGRGKWK--LMLDSNKDIFKERTEVDLNDKWRSM 944
>TC220514
Length = 706
Score = 40.0 bits (92), Expect = 4e-04
Identities = 29/84 (34%), Positives = 42/84 (49%)
Frame = +3
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGS 64
++ WT E L G+ ++G G+W I SS RT +DL+DKWRN+
Sbjct: 162 QKMWTLPEVLKLVEGISEYGVGRWTDIKRFLFSSSSYRT--PIDLRDKWRNL-------- 311
Query: 65 RQKAKLALKNSPPAPKTDNNQLAL 88
+A A K S A + N++LAL
Sbjct: 312 -LRASSAQKTSREAEQ--NDELAL 374
>TC218983 similar to UP|Q94AX9 (Q94AX9) At1g72650/F28P22_16 (MYB
transcription factor), partial (14%)
Length = 769
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/49 (46%), Positives = 27/49 (54%)
Frame = +3
Query: 8 WTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNI 56
WT E L GV + GAG+W I S RT +VDLKDKWRN+
Sbjct: 234 WTLVEVIKLVEGVSRCGAGRWSEIKRLSFASYSYRT--SVDLKDKWRNL 374
>TC229681 UP|Q9S7E3 (Q9S7E3) GmMYB29A1 protein, complete
Length = 795
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
MG K WT EE+ L + + KHG G WR + P+ + +LR + L +W N
Sbjct: 28 MGLKKGPWTPEEDQILMSYIQKHGHGNWRAL---PKLAGLLRCGKSCRL--RWIN 177
>TC229682 UP|Q9XIU9 (Q9XIU9) GmMYB29A2 protein, complete
Length = 1249
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
MG K WT EE+ L + + KHG G WR + P+ + +LR + L +W N
Sbjct: 111 MGLKKGPWTPEEDQILMSYIQKHGHGNWRAL---PKLAGLLRCGKSCRL--RWIN 260
>TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), partial (9%)
Length = 1045
Score = 36.2 bits (82), Expect = 0.006
Identities = 15/19 (78%), Positives = 16/19 (83%)
Frame = +3
Query: 6 QKWTAEEEAALKAGVVKHG 24
QKW AEEE LKAGV+KHG
Sbjct: 213 QKWIAEEEVTLKAGVLKHG 269
>TC233521 similar to UP|O04140 (O04140) Myb protein, partial (44%)
Length = 886
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
MG K WTAEE+ L + + ++G G WR + P+ + +LR + L +W N
Sbjct: 47 MGLKKGPWTAEEDQILVSHIQRYGHGNWRAL---PKQAGLLRCGKSCRL--RWIN 196
>TC207566 similar to UP|Q761Y7 (Q761Y7) BRI1-KD interacting protein 127
(Fragment), partial (7%)
Length = 566
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 24 GAGKWRTILMDPEFSSILRTRSNVDLKDKWRNI 56
G G W +I +S++ RS VDLKDKWRN+
Sbjct: 18 GEGNWASIRSF--YSNVFENRSGVDLKDKWRNM 110
>TC218770 UP|Q9XIU5 (Q9XIU5) GmMYB29B2 protein, complete
Length = 1316
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
MG K W EE+ L + + KHG G WR + P+ + +LR + L +W N
Sbjct: 139 MGLKKGPWATEEDQILTSYIQKHGHGNWRAL---PKQAGLLRCGKSCRL--RWIN 288
>TC214351 similar to UP|Q08707 (Q08707) BPF-1 protein, partial (28%)
Length = 1517
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGS 64
++ ++ +E AL V K G G+WR + + ++ RT VDLKDKW+ + TA
Sbjct: 916 RRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFDNANHRTY--VDLKDKWKTLVHTARISP 1089
Query: 65 RQK 67
+Q+
Sbjct: 1090QQR 1098
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,313
Number of Sequences: 63676
Number of extensions: 80385
Number of successful extensions: 416
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of query: 147
length of database: 12,639,632
effective HSP length: 88
effective length of query: 59
effective length of database: 7,036,144
effective search space: 415132496
effective search space used: 415132496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136142.6