TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136142.5 - phase: 0 
         (166 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204923 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {A...   200  3e-52
TC204924 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {A...   194  1e-50
TC204925 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {A...    89  1e-18
TC204926 similar to UP|Q8GRX5 (Q8GRX5) NADH-ubiquinone oxidoredu...    79  1e-15
TC224998 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein...    29  1.2
TC219833 similar to UP|Q9C5Q3 (Q9C5Q3) BZIP protein DPBF3, parti...    28  1.5
TC233937 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {A...    28  2.0
TC213180 similar to UP|ALL3_BETVE (P43187) Calcium-binding aller...    28  2.6
BQ253962                                                               27  3.4
TC218609 similar to PIR|T04655|T04655 protein kinase homolog F8D...    27  4.5
TC234301 homologue to UP|Q6M760 (Q6M760) Short chain dehydrogena...    27  5.9
AW349720                                                               27  5.9
TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-li...    27  5.9
CF921146                                                               26  7.7

>TC204923 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Arabidopsis
           thaliana;} , partial (75%)
          Length = 812

 Score =  200 bits (508), Expect = 3e-52
 Identities = 93/109 (85%), Positives = 101/109 (92%)
 Frame = +1

Query: 14  SLRATLIRRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRI 73
           +LRAT+ RRFSTDAL E K GEIG+VSGIPQEHLRRRV+IYSPARTA QQGSG VG+W+I
Sbjct: 112 ALRATMARRFSTDALAEIKRGEIGMVSGIPQEHLRRRVVIYSPARTASQQGSGKVGKWKI 291

Query: 74  NFLSTQKWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGWEY 122
           NFLSTQKWENPLMGWTSTGDPYSHVGDSAL FD+EEAAK FAE+HGWEY
Sbjct: 292 NFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEEAAKAFAEKHGWEY 438


>TC204924 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Arabidopsis
           thaliana;} , partial (75%)
          Length = 747

 Score =  194 bits (494), Expect = 1e-50
 Identities = 91/109 (83%), Positives = 99/109 (90%)
 Frame = +1

Query: 14  SLRATLIRRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSGNVGRWRI 73
           +LRAT+ R FST AL E K GEIG+VSGIP+EHLRRRVLIYSPARTA QQGSG VGRW+I
Sbjct: 112 ALRATMARPFSTGALAEIKRGEIGMVSGIPEEHLRRRVLIYSPARTASQQGSGKVGRWKI 291

Query: 74  NFLSTQKWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGWEY 122
           NFLSTQKWENPLMGWTSTGDPYSHVGDSAL FD+E+AAK FAE+HGWEY
Sbjct: 292 NFLSTQKWENPLMGWTSTGDPYSHVGDSALTFDSEQAAKAFAEKHGWEY 438


>TC204925 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Arabidopsis
           thaliana;} , partial (56%)
          Length = 500

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 39/55 (70%), Positives = 44/55 (79%), Gaps = 3/55 (5%)
 Frame = +1

Query: 71  WRINFLSTQ---KWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGWEY 122
           W + FL       WENPLMGWTS+GDPYSHVGDSAL FD+E+AAK FAE+HGWEY
Sbjct: 136 WFLEFLKNTFVGGWENPLMGWTSSGDPYSHVGDSALTFDSEQAAKAFAEKHGWEY 300



 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 28/38 (73%), Positives = 32/38 (83%)
 Frame = +3

Query: 14  SLRATLIRRFSTDALVESKPGEIGLVSGIPQEHLRRRV 51
           +LRAT+ R FST AL E K GEIG+VSGIP+EHLRRRV
Sbjct: 63  ALRATMARPFSTGALAEIKRGEIGMVSGIPEEHLRRRV 176


>TC204926 similar to UP|Q8GRX5 (Q8GRX5) NADH-ubiquinone oxidoreductase 18 kDa
           subunit, mitochondrial-like protein, partial (47%)
          Length = 734

 Score = 79.0 bits (193), Expect = 1e-15
 Identities = 33/39 (84%), Positives = 37/39 (94%)
 Frame = +1

Query: 80  KWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERH 118
           +WENPLMGWTSTGDPYSHVGDSAL FD+E+AAK FAE+H
Sbjct: 616 RWENPLMGWTSTGDPYSHVGDSALTFDSEQAAKAFAEKH 732



 Score = 59.3 bits (142), Expect = 8e-10
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 50  RVLIYSPARTAGQQGSGNVGRWRINFLSTQK 80
           +VLIYSPARTA QQGSG VGRW+INFLSTQK
Sbjct: 105 QVLIYSPARTASQQGSGKVGRWKINFLSTQK 197


>TC224998 similar to UP|RS21_ORYSA (P35687) 40S ribosomal protein S21,
           complete
          Length = 907

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
 Frame = -2

Query: 3   NILLRTASRGGSLRATLIRRFSTDALVESKPGEIGLVSGI----PQEHLRRRVLIYSPAR 58
           N LL   +  G++  TL    STD   ESK GE+ +V  I    P  +L R +++     
Sbjct: 363 NFLLLPQAI*GTVSITL----STDEAAESKSGEMAIVDAILIHMPNVNLNRSMVLSGNQS 196

Query: 59  TAGQQGSGNVGRWRINFL 76
             G+    NV    ++FL
Sbjct: 195 VCGRALPRNVKLGDLSFL 142


>TC219833 similar to UP|Q9C5Q3 (Q9C5Q3) BZIP protein DPBF3, partial (13%)
          Length = 526

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = -2

Query: 128 NIIHRFHCDFSNLNDSGIIISSFHHFFCACF 158
           N +H  H  F  L D   +I  F  FFCAC+
Sbjct: 315 NSLHTSHSTFLVLQD*KQLIQIFKSFFCACW 223


>TC233937 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
           thaliana;} , partial (47%)
          Length = 692

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 3/36 (8%)
 Frame = +2

Query: 127 LNIIHRFHCDFSNLNDSGIIISSF---HHFFCACFA 159
           LN +H   CD S+ ND+   +SS     H F  C+A
Sbjct: 242 LNTVHYIQCDISDQNDAESKLSSLTDVTHVFYVCWA 349


>TC213180 similar to UP|ALL3_BETVE (P43187) Calcium-binding allergen Bet v 3
           (Bet v III), partial (51%)
          Length = 464

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 54  YSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTST 91
           +SP R +    +    R RI++  T +W  P +GW+ T
Sbjct: 248 WSP*RNST*DPATRDSRTRISWRCTSRWVRPTLGWSRT 361


>BQ253962 
          Length = 420

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 21/78 (26%), Positives = 34/78 (42%)
 Frame = -3

Query: 43  PQEHLRRRVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGDPYSHVGDSA 102
           P   +R   ++++PA+T       +   + I F S Q + +     T     +  +  SA
Sbjct: 241 PPGDVRPGHIMFAPAKT-NLIAPRSTSNFFIIFRSLQLYFSLFFR*TDAFSWFCDITSSA 65

Query: 103 LDFDTEEAAKEFAERHGW 120
           + F T  AA   AE HGW
Sbjct: 64  ILFITSRAAGGVAENHGW 11


>TC218609 similar to PIR|T04655|T04655 protein kinase homolog F8D20.10 -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (33%)
          Length = 698

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (59%)
 Frame = +2

Query: 125 EGLNIIHRFHCDFSNLNDSGIIISSFHHFF 154
           EG N +H  +C   N+N   +++ SF +FF
Sbjct: 278 EG*NFVHLTNC*LININFQ*MMLKSFQNFF 367


>TC234301 homologue to UP|Q6M760 (Q6M760) Short chain dehydrogenase,
           N-terminal , partial (5%)
          Length = 823

 Score = 26.6 bits (57), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (49%)
 Frame = -3

Query: 130 IHRFHCDFSNLNDSGIIISSFHHF 153
           IHRFH  F     SG +I  F  F
Sbjct: 722 IHRFHVGFGFGTSSGFVIQEFEEF 651


>AW349720 
          Length = 624

 Score = 26.6 bits (57), Expect = 5.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 145 IIISSFHHFFCAC 157
           +++SSFHHF C C
Sbjct: 161 VVLSSFHHFNCFC 123


>TC224972 similar to UP|Q9M084 (Q9M084) Aspartate--tRNA ligase-like
          protein, partial (49%)
          Length = 1255

 Score = 26.6 bits (57), Expect = 5.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 33 PGEIGLVSGIPQEHLRRRVLIYSPARTAGQQGSG 66
          P +I +V G+P+   RRR ++  P++  G+Q  G
Sbjct: 49 PSQIDVVFGVPRPR-RRRSIVGGPSQQKGRQEGG 147


>CF921146 
          Length = 605

 Score = 26.2 bits (56), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +3

Query: 144 GIIISSFHHFFCACFAPLL 162
           G I+S  H F+  CFAPL+
Sbjct: 168 GEILSHHHLFYSVCFAPLI 224


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,812,322
Number of Sequences: 63676
Number of extensions: 129660
Number of successful extensions: 782
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of query: 166
length of database: 12,639,632
effective HSP length: 90
effective length of query: 76
effective length of database: 6,908,792
effective search space: 525068192
effective search space used: 525068192
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)