TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135848.1 + phase: 0 
         (64 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233873 weakly similar to UP|Q6ZJC8 (Q6ZJC8) BHLH protein famil...    46  3e-06
BI699869                                                               38  0.001
TC229490 similar to UP|Q8S9M5 (Q8S9M5) At2g41130/T3K9.10, partia...    36  0.004
BF009048                                                               25  6.0
BI972809                                                               25  6.0
TC219999 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (5%)    25  7.9

>TC233873 weakly similar to UP|Q6ZJC8 (Q6ZJC8) BHLH protein family-like,
           partial (25%)
          Length = 817

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = +3

Query: 4   ISRALLSMKAKVVKVEMVTVGGRTRSVLWVQ-GVENESLGMLKSTLKVVM 52
           +S+A+ S++AK V+ EM+TVGGRT+SV+ V+   E E +G L+  LK V+
Sbjct: 483 VSQAIRSVRAKAVRAEMMTVGGRTKSVVVVEWEKEEEEVGALERALKAVV 632


>BI699869 
          Length = 421

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
 Frame = +1

Query: 8  LLSMKAKVVKVEMVTVGGRTRSVLWV---QGVENESLGMLKSTLKVVMHKPS 56
          L S++ K +K EM T+GGRTR+VL V   +    ES+  L+++LK ++ + S
Sbjct: 31 LRSLRLKTLKAEMATLGGRTRNVLVVATDKDHSGESIQFLQNSLKSLVERSS 186


>TC229490 similar to UP|Q8S9M5 (Q8S9M5) At2g41130/T3K9.10, partial (56%)
          Length = 1006

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +1

Query: 8   LLSMKAKVVKVEMVTVGGRTRSVLWVQGVEN---ESLGMLKSTLKVVMHKPS 56
           L S+  K +K EM T+GGRTR+VL V   +    ES+  L+++L+ ++ + S
Sbjct: 661 LNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLRSILDRSS 816


>BF009048 
          Length = 421

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 10/36 (27%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
 Frame = +3

Query: 25  GRTRSV-LWVQGVENESLGMLKSTLKVVMHKPSFKM 59
           GR + + LW+  ++ E+    K +L +V+H P+  +
Sbjct: 96  GREKPIKLWLLSIQREARATKKQSLGIVLHLPTHSL 203


>BI972809 
          Length = 286

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = -1

Query: 12  KAKVVKVEMVTVGGRTRSVLWVQGVENES 40
           + +VV  E+ T+GG + S  WV G  +ES
Sbjct: 262 RRRVVSSEVKTIGGSSSS*KWV*GNSSES 176


>TC219999 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (5%)
          Length = 641

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  VGGRTRSVLWVQGVENESLG 42
           VGGR    +W +GVE   +G
Sbjct: 278 VGGRRERNVWTEGVEGSGMG 337


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,022,456
Number of Sequences: 63676
Number of extensions: 13926
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of query: 64
length of database: 12,639,632
effective HSP length: 40
effective length of query: 24
effective length of database: 10,092,592
effective search space: 242222208
effective search space used: 242222208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)