BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135799.6 + phase: 0
(321 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%) 82 4e-16
AW756593 47 9e-06
AW596916 47 9e-06
TC213978 44 8e-05
AW203333 44 8e-05
TC222844 weakly similar to UP|Q9FFW4 (Q9FFW4) Similarity to heat... 41 6e-04
TC224116 40 0.001
BU965508 40 0.002
BG726934 32 0.39
TC210605 weakly similar to UP|Q9FV01 (Q9FV01) SKP1 interacting p... 31 0.66
TC215207 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 31 0.66
TC220267 similar to UP|Q6K235 (Q6K235) F-box-like protein, parti... 31 0.86
TC224484 similar to UP|Q38848 (Q38848) LRP1, partial (20%) 30 1.5
TC211952 30 1.9
TC225921 UP|Q8W0W5 (Q8W0W5) Repressor protein, complete 29 2.5
TC207733 similar to UP|Q94A15 (Q94A15) AT5g14850/T9L3_150, parti... 29 2.5
TC225922 UP|Q8W0W5 (Q8W0W5) Repressor protein, partial (78%) 29 3.3
BE661138 weakly similar to GP|21779917|gb| leucine-rich-like pro... 28 4.3
TC228221 similar to UP|Q6NPD4 (Q6NPD4) At5g27490, partial (98%) 28 7.3
BU083606 28 7.3
>TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%)
Length = 557
Score = 81.6 bits (200), Expect = 4e-16
Identities = 58/184 (31%), Positives = 89/184 (47%), Gaps = 3/184 (1%)
Frame = +3
Query: 3 KQKISTSVIDRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDF---TKT 59
+QK +T DRIS PD +L++ILS LP +QA +T ILSKRW LW V LDF +
Sbjct: 39 RQKPTTGDDDRISHLPDVLLLQILSLLPTKQAVITGILSKRWRPLWPAVSVLDFDDESSP 218
Query: 60 KWKDQESYSRFEEFVFSVLYSREAAGNHSINTFILDIEYDSSELLLDGIKNIHKWVDIVV 119
++ + F EFV+SVL +A + Y + ++I W+ V
Sbjct: 219 EFHHPGGLTGFAEFVYSVLLLHDAPAIERFRLRCANPNYSA--------RDIATWLCHVA 374
Query: 120 KSKVQNIHLYPHVPLNGEETILPKFPMSSILSCTTLVVLKLRWFNLTVVSDLSIRLPSLK 179
+ + + + L + LP+ + C T+ V+KL L ++ S+ LP LK
Sbjct: 375 RRRAERVELSLSL---SRYVALPR----CLFHCDTVSVMKLNGVFLNALASFSVSLPLLK 533
Query: 180 TLHL 183
LH+
Sbjct: 534 VLHV 545
>AW756593
Length = 370
Score = 47.4 bits (111), Expect = 9e-06
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 DRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDFTKTKWKDQESYSRFE 71
D+IS PD+IL+ ++ + +A T +LSKRW +LW + L F +K+ ES +
Sbjct: 63 DKISELPDNILLHMMDFMDTREAVQTCVLSKRWNNLWKRLSTLLFNTSKF---ESVFKIN 233
Query: 72 EFVFSVLYSREAAGNHSINTFILDIEYD---SSELLLDGI 108
+F+ L R+ SI+ +D++ EL L G+
Sbjct: 234 KFLCRFLSDRD----DSISLLNVDLDVGPPIELELYLSGV 341
>AW596916
Length = 455
Score = 47.4 bits (111), Expect = 9e-06
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = +3
Query: 1 MSKQKISTSVIDRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDFTKTK 60
M K +DR+S PD +L+ I+ + ++ A T +LSKRW LW + +L +
Sbjct: 231 MQSDKDREEDMDRLSDLPDFVLLHIMKFMSMKHAVQTCVLSKRWKELWKRLTNLALHSSD 410
Query: 61 WKDQESYSRFEEFV 74
+ D +S+F +V
Sbjct: 411 FADLAHFSKFLSWV 452
>TC213978
Length = 716
Score = 44.3 bits (103), Expect = 8e-05
Identities = 43/119 (36%), Positives = 62/119 (51%), Gaps = 3/119 (2%)
Frame = +1
Query: 148 SILSCTTLVVLKLRW---FNLTVVSDLSIRLPSLKTLHLKEIYFDQQRDFMMLLDGCPVL 204
++ SC TLVVLKL N + S+ LP L TLHL+ + ++RD LL G P L
Sbjct: 22 ALFSCKTLVVLKLIGGLNRNPFPLDFKSVDLPLLTTLHLQS-FILERRDMAELLRGSPNL 198
Query: 205 EDLQLCYIYMTRQSHHSLDDFESSSMLKKLNRADITDCECYFPVKSLSNLEFLRIKLSE 263
E L + ++Y + FE L KL RA I + P++ ++N++FLRI E
Sbjct: 199 EYLFVGHMYFSGPEAR----FE---RLPKLLRATI--AFGHVPLEVVNNVQFLRIDWME 348
>AW203333
Length = 418
Score = 44.3 bits (103), Expect = 8e-05
Identities = 36/104 (34%), Positives = 45/104 (42%), Gaps = 9/104 (8%)
Frame = +1
Query: 12 DRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDFTKT--------KWKD 63
D IS+ P IL ILS +P E A TS+LSK W W P L F+ T W+D
Sbjct: 85 DMISTLPKTILHDILSRMPEEDAVRTSVLSKSWAEAWSTYPILYFSDTMIVGTFPRPWED 264
Query: 64 -QESYSRFEEFVFSVLYSREAAGNHSINTFILDIEYDSSELLLD 106
F + V L G +I F L I +D + LD
Sbjct: 265 FLRKRKNFIDHVKRTLLRFHTQG-LAIKQFRLIINFDLQYMSLD 393
>TC222844 weakly similar to UP|Q9FFW4 (Q9FFW4) Similarity to heat shock
transcription factor HSF30, partial (6%)
Length = 746
Score = 41.2 bits (95), Expect = 6e-04
Identities = 22/67 (32%), Positives = 36/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 12 DRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDFTKTKWKD--QESYSR 69
DRIS+ PD +L +++ + + A T +LSKRW L + +L F + S+ +
Sbjct: 496 DRISALPDSLLFHMINFMDTKSAVQTCVLSKRWNDLSKCLTNLTFNSDLPSEGLDRSFKK 675
Query: 70 FEEFVFS 76
FE +V S
Sbjct: 676 FESWVLS 696
>TC224116
Length = 520
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/45 (44%), Positives = 24/45 (52%)
Frame = +2
Query: 12 DRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDF 56
D IS P I+ IL LPI A TSILS +W + W + L F
Sbjct: 287 DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITQLVF 421
>BU965508
Length = 447
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/45 (44%), Positives = 24/45 (52%)
Frame = +2
Query: 12 DRISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWCFVPDLDF 56
D IS P I+ IL LPI A TSILS +W + W + L F
Sbjct: 296 DLISDLPQSIIESILVQLPIRDAVRTSILSSKWRYKWASITRLVF 430
>BG726934
Length = 387
Score = 32.0 bits (71), Expect = 0.39
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 10 VIDRISSFPDDILIRILSSLP--IEQACVTSILSKRWTHL 47
++DR D++L+RILS LP +Q S++ KRW +L
Sbjct: 93 ILDRTLLLSDELLLRILSKLPDSSQQRNSNSLVCKRWLNL 212
>TC210605 weakly similar to UP|Q9FV01 (Q9FV01) SKP1 interacting partner 4,
partial (12%)
Length = 661
Score = 31.2 bits (69), Expect = 0.66
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +1
Query: 14 ISSFPDDILIRILSSLPIEQACVTSILSKRWTHLWC 49
I PDDI + L+ +P + V +SKRW +L C
Sbjct: 202 ICGLPDDISLMCLARIPRKYHSVMKCVSKRWRNLIC 309
>TC215207 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
complete
Length = 714
Score = 31.2 bits (69), Expect = 0.66
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 40 LSKRWTHLWCFVPDLDFTKTKWKDQESY 67
L +RW+ WCF DL + + KWK ++
Sbjct: 273 LFERWSWCWCFPEDLWWKQKKWKPSPTF 356
>TC220267 similar to UP|Q6K235 (Q6K235) F-box-like protein, partial (7%)
Length = 586
Score = 30.8 bits (68), Expect = 0.86
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 4 QKISTSVIDRISSFPDDILIRILSSLPIEQACVTSILSKRW 44
+K +T+V + PDD+L RIL+ LPI +SKRW
Sbjct: 305 EKEATAV--SLDVLPDDLLERILAYLPIASIFRAGCVSKRW 421
>TC224484 similar to UP|Q38848 (Q38848) LRP1, partial (20%)
Length = 574
Score = 30.0 bits (66), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = +2
Query: 166 TVVSDLSIRLPSLKTLHLKEIYFDQQRDFMMLLDGCPVLEDLQLCYIYMTRQSHHSLD 223
T++S PS TLHL+++ F+ LLD L +LQ+ +++ HH D
Sbjct: 107 TIISQAFQAHPSSSTLHLEKMIFN-------LLDDYHSLMNLQVATLHLKLHKHHEND 259
>TC211952
Length = 528
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 279 FVFLIFNFIELNFTLIFYEAQTPPGLSVSRCRHMSCPTRHRHL 321
F+ L+ +I F + Y+ TPP +++ C H C T RHL
Sbjct: 350 FLSLVLEYITSLFYEL*YQHSTPP*IAICNCIH*VC-THSRHL 225
>TC225921 UP|Q8W0W5 (Q8W0W5) Repressor protein, complete
Length = 1044
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Frame = -1
Query: 126 IHLYPHVPLNGEETILPKF-PMSSILSCTTLVVLKLRWFNLTVVSDLSIRLP 176
+H + HVPL + P P SS L C+TL +LK T V + +LP
Sbjct: 627 LHSFLHVPLQTSFAVQPMLLPQSSQLCCSTLHLLKSLALFPTCVVHMLHKLP 472
>TC207733 similar to UP|Q94A15 (Q94A15) AT5g14850/T9L3_150, partial (26%)
Length = 716
Score = 29.3 bits (64), Expect = 2.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 217 QSHHSLDDFESSSMLKKLNRADITDCEC 244
+SH ++FES L+KL +A+I C+C
Sbjct: 269 RSHLQKNEFESVMCLEKLKQANIQPCDC 186
>TC225922 UP|Q8W0W5 (Q8W0W5) Repressor protein, partial (78%)
Length = 658
Score = 28.9 bits (63), Expect = 3.3
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Frame = -1
Query: 126 IHLYPHVPLNGEETILPKF-PMSSILSCTTLVVLKLRWFNLTVVSDLSIRLP 176
+H + HVPL + P P SS L C+TL +LK T V + +LP
Sbjct: 322 LHSFLHVPLQTSFAVQPMLLPQSSQLCCSTLHLLKNLALFPTCVVHMLHKLP 167
>BE661138 weakly similar to GP|21779917|gb| leucine-rich-like protein
{Aegilops tauschii}, partial (7%)
Length = 567
Score = 28.5 bits (62), Expect = 4.3
Identities = 23/66 (34%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Frame = +1
Query: 143 KFPMSSILSCTTLVVLKLRWFNLT-VVSDLSIRLPSLKTLHLKEIYFDQQRDFMMLLDGC 201
KFP+ +IL+C+ L L + +LT + D S SL+ L L F Q F M +
Sbjct: 103 KFPIDTILNCSHLEELNMNHMSLTGTLPDFSSLKKSLRVLDLSYNSFTGQ--FPMSVFNL 276
Query: 202 PVLEDL 207
LE+L
Sbjct: 277 TNLEEL 294
>TC228221 similar to UP|Q6NPD4 (Q6NPD4) At5g27490, partial (98%)
Length = 1094
Score = 27.7 bits (60), Expect = 7.3
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -3
Query: 158 LKLRWFNLTVVSDLSIRLPSLKTLHLKEIYF 188
+ +RWFNL ++ L +++ S+K + K++YF
Sbjct: 999 MNIRWFNL*IM--LQLQIVSMKIYNAKKLYF 913
>BU083606
Length = 422
Score = 27.7 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 22/36 (60%)
Frame = -1
Query: 148 SILSCTTLVVLKLRWFNLTVVSDLSIRLPSLKTLHL 183
S++SC V + + W VV+ +++RLPS +L +
Sbjct: 407 SMISCVLRVAMTMTWCYRKVVTVVALRLPSTLSLDI 300
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,374,644
Number of Sequences: 63676
Number of extensions: 271231
Number of successful extensions: 2085
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of query: 321
length of database: 12,639,632
effective HSP length: 97
effective length of query: 224
effective length of database: 6,463,060
effective search space: 1447725440
effective search space used: 1447725440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC135799.6