TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135799.5 + phase: 0 
         (171 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233924                                                               44  3e-05
TC203507                                                               27  4.8
TC203476 weakly similar to PIR|C86287|C86287 F9L1.24 protein - A...    27  4.8
TC207277 weakly similar to UP|Q7CV43 (Q7CV43) AGR_L_732p, partia...    27  4.8
TC211671 similar to GB|AAP37747.1|30725450|BT008388 At5g51230 {A...    27  6.3
TC220946 weakly similar to UP|Q8GRS4 (Q8GRS4) Fw2.2, partial (39%)     26  8.2

>TC233924 
          Length = 641

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 44/78 (55%), Gaps = 6/78 (7%)
 Frame = +3

Query: 1   MSAKYTPISAVSGGRKNLKMCVRVAHIWLI----REKKVPTSIIFMN--MLLVDEKGGRI 54
           M  +Y  +  ++  +++ K+ V+V  +W+I      K+ P S I ++  M+LVD K GR+
Sbjct: 195 MVDQYNSVVEINVEKESWKIMVKVVRLWMIYYVSTNKQTPNSKILLSTEMVLVDSKEGRV 374

Query: 55  HATTRKDLVAKFRSMVQE 72
           H + +  L+ KF   +QE
Sbjct: 375 HGSVKWTLIYKFDKTLQE 428


>TC203507 
          Length = 709

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 22/105 (20%), Positives = 48/105 (44%), Gaps = 7/105 (6%)
 Frame = +3

Query: 73  GGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIP-MNVFEFKPFNEILSS 131
           GGT   +N + DF+   Y + +  H++    +    +  LP +P  +V  +   N++   
Sbjct: 45  GGTMMSDNGLTDFD--VYIMETSNHQMKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYP 218

Query: 132 TVEEVSTDVIGHVIER------GDIRETEKDRRKSRVIDLTLEDL 170
           T+ +++ D++   +         D +  E D+ +S +   T+E L
Sbjct: 219 TLSKMARDILSVPVSSLPPESVFDTKVKEMDQYRSSLRPETVEAL 353


>TC203476 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (19%)
          Length = 1227

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 16/70 (22%), Positives = 36/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 73  GGTYQLENAIVDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIP-MNVFEFKPFNEILSS 131
           GGT   +N + DF+    + +SH+ K  +  +    +  LP +P  +V  +   N++   
Sbjct: 592 GGTLMPDNGLTDFDVYIMETSSHQMKSEL--DQYLEESLLPRVPDFDVLGWWKLNKLKYP 765

Query: 132 TVEEVSTDVI 141
           T+ +++ D++
Sbjct: 766 TLSKMARDIL 795


>TC207277 weakly similar to UP|Q7CV43 (Q7CV43) AGR_L_732p, partial (6%)
          Length = 980

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 83  VDFNESPYKVTSHKHKLSMMHNSTFTKVHLPAIPMN 118
           + FN SP+   S K KL      TFT   LP++P N
Sbjct: 205 IPFNPSPH---SSKPKLEFTLFPTFTTALLPSLPFN 107


>TC211671 similar to GB|AAP37747.1|30725450|BT008388 At5g51230 {Arabidopsis
           thaliana;} , partial (9%)
          Length = 809

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = +3

Query: 103 HNSTFTKVHLPAIPMNVFEFKPFNEILSSTVEEVS 137
           H S ++  HLP +P N FE+    +  +S  ++VS
Sbjct: 342 HVSNWSDFHLPKLPWN*FEYSSPGKFYTS*SQQVS 446


>TC220946 weakly similar to UP|Q8GRS4 (Q8GRS4) Fw2.2, partial (39%)
          Length = 530

 Score = 26.2 bits (56), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 89  PYKVTSHKHKLSMMH 103
           P KV+ HKH+ SM+H
Sbjct: 30  PVKVSQHKHQTSMLH 74


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,122,724
Number of Sequences: 63676
Number of extensions: 71871
Number of successful extensions: 397
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of query: 171
length of database: 12,639,632
effective HSP length: 90
effective length of query: 81
effective length of database: 6,908,792
effective search space: 559612152
effective search space used: 559612152
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)