BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135798.2 + phase: 0
(261 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214308 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, ... 496 e-141
TC214363 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, ... 496 e-141
TC214057 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, ... 490 e-139
TC224141 homologue to UP|Q871N9 (Q871N9) Probable ribosomal prot... 304 2e-83
TC214139 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, ... 290 5e-79
BF596189 weakly similar to GP|24817254|em ribosomal protein S3a ... 248 3e-66
AW707059 weakly similar to GP|24817254|em ribosomal protein S3a ... 234 2e-62
BE330565 similar to GP|1856971|dbj This gene is specifically exp... 181 3e-46
BF070104 similar to GP|1856971|dbj This gene is specifically exp... 163 8e-41
AW307344 similar to PIR|T05287|T052 ribosomal protein S3a cytos... 123 1e-28
CD411293 homologue to PIR|T16958|T169 photosystem I psaH precurs... 112 2e-25
CK606263 35 0.034
TC215858 similar to UP|RPBY_ARATH (Q38859) DNA-directed RNA poly... 30 1.1
TC213154 UP|Q7XY23 (Q7XY23) Cyc07, partial (5%) 30 1.1
BU765286 28 5.5
>TC214308 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
Length = 1112
Score = 496 bits (1277), Expect = e-141
Identities = 245/261 (93%), Positives = 255/261 (96%)
Frame = +1
Query: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG
Sbjct: 154 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 333
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LKHRVFEVSLADLQGDED+AF+KIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQTL
Sbjct: 334 LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 513
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQ+RQIRRKMREIM+NQA +CD
Sbjct: 514 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQIRRKMREIMVNQAAACD 693
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
LK+LVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 694 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 873
Query: 241 TKVERPADETMVEGTPEIVGA 261
KV+RPADET+ E E+VGA
Sbjct: 874 AKVDRPADETLAEEATEVVGA 936
>TC214363 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
Length = 1070
Score = 496 bits (1276), Expect = e-141
Identities = 244/261 (93%), Positives = 256/261 (97%)
Frame = +2
Query: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS+FQVKN+GKTLVSRTQGTKIASEG
Sbjct: 86 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNIGKTLVSRTQGTKIASEG 265
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LKHRVFEVSLADLQGDED++F+KIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQTL
Sbjct: 266 LKHRVFEVSLADLQGDEDHSFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 445
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIM+NQAT+CD
Sbjct: 446 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATACD 625
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
LK+LVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 626 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 805
Query: 241 TKVERPADETMVEGTPEIVGA 261
KV+RPADET+ E E+VGA
Sbjct: 806 AKVDRPADETLAEEATEVVGA 868
Score = 32.7 bits (73), Expect = 0.17
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 2 AVGKNKRISKGKKGGKKK 19
AVGKNKRISKGKKG ++
Sbjct: 1 AVGKNKRISKGKKGDSRR 54
>TC214057 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
Length = 1044
Score = 490 bits (1261), Expect = e-139
Identities = 243/261 (93%), Positives = 254/261 (97%)
Frame = +1
Query: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPS+FQVKNVGKTLVSRTQGTKIASEG
Sbjct: 67 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 246
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LKHRVFEVSLADLQGDED+AF+KIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQTL
Sbjct: 247 LKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 426
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEAHVDVKTTDNYTLRMFCIGFTKRR+NQVKRTCYAQSSQIRQIRRKMREIM NQAT+CD
Sbjct: 427 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATACD 606
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
LK+LVRKFIPE+IGKEIEKATSSIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 607 LKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 786
Query: 241 TKVERPADETMVEGTPEIVGA 261
KV+RPADE + E EIVGA
Sbjct: 787 AKVDRPADEIVAEEPTEIVGA 849
>TC224141 homologue to UP|Q871N9 (Q871N9) Probable ribosomal protein 10,
cytosolic, partial (84%)
Length = 681
Score = 304 bits (779), Expect = 2e-83
Identities = 152/214 (71%), Positives = 179/214 (83%)
Frame = +3
Query: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
MAVGKNKR+SKGKKG KKK ADPF++KDWY IKAP+ F V++VGKTLV+RT G K A++
Sbjct: 27 MAVGKNKRLSKGKKGLKKKTADPFSRKDWYGIKAPAPFNVRDVGKTLVNRTTGLKNANDS 206
Query: 61 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
LK R+ EVSLADLQ DED+AFRKI+LR ++VQGKN LTNF G+DFT+DKLRSLVRKWQ+L
Sbjct: 207 LKGRIVEVSLADLQKDEDHAFRKIKLRIDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSL 386
Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
IEA+V VKTTD+Y LR+F I FTKRR NQ+K+T YA SSQIR IRRKM EI+ +A SC
Sbjct: 387 IEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIITREAGSCT 566
Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRK 214
L+ L K IPE+IG+EIEKAT IYPLQNV IRK
Sbjct: 567 LQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRK 668
>TC214139 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, partial
(60%)
Length = 708
Score = 290 bits (742), Expect = 5e-79
Identities = 144/157 (91%), Positives = 150/157 (94%)
Frame = +2
Query: 105 FTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQI 164
FTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRR+NQVKRTCYAQSSQIRQI
Sbjct: 2 FTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQI 181
Query: 165 RRKMREIMINQATSCDLKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFD 224
RRKMREIM NQATSCDLK+LVRKFIPE+IGKEIEKATSSIYPLQNVF+RKVKILKAPKFD
Sbjct: 182 RRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFD 361
Query: 225 LGKLMEVHGDYSEDVGTKVERPADETMVEGTPEIVGA 261
LGKLMEVHGDYSEDVG KV+RPADE + E EIVGA
Sbjct: 362 LGKLMEVHGDYSEDVGAKVDRPADEIVAEEPTEIVGA 472
>BF596189 weakly similar to GP|24817254|em ribosomal protein S3a {Cicer
arietinum}, partial (65%)
Length = 610
Score = 248 bits (632), Expect = 3e-66
Identities = 130/204 (63%), Positives = 156/204 (75%)
Frame = +2
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKN+RI KGKKGGKKKAADPFAKKDWYD+KAPS+ QVKN+GKTL SRTQGT+IASEGL
Sbjct: 2 AVGKNRRIFKGKKGGKKKAADPFAKKDWYDVKAPSLLQVKNIGKTLDSRTQGTRIASEGL 181
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
HRVF+VSL+DL GDED++F IRLRA+DVQ KN+LT++WGMD T D ++SLVRKW+T I
Sbjct: 182 THRVFDVSLSDLHGDEDHSF*MIRLRADDVQRKNVLTHYWGMDVTADTVKSLVRKWRTFI 361
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
A D TTD+YTLR+F IG TK SN V YAQS+ IR RKMR++M+ A D
Sbjct: 362 *ADADA*TTDDYTLRIFVIGSTKMTSNYVMMISYAQSTLIRHDPRKMRDMMVTLALHVD* 541
Query: 182 KDLVRKFIPEMIGKEIEKATSSIY 205
+ + E + +E K TSSIY
Sbjct: 542 MNWRPRSFRECLLRE-*KGTSSIY 610
>AW707059 weakly similar to GP|24817254|em ribosomal protein S3a {Cicer
arietinum}, partial (63%)
Length = 541
Score = 234 bits (598), Expect = 2e-62
Identities = 119/180 (66%), Positives = 150/180 (83%)
Frame = +2
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNK+ISKGKKGGKKKAADPFAKKDWY+IKAPS+FQVKNV KTL+S TQ T IASE L
Sbjct: 2 AVGKNKKISKGKKGGKKKAADPFAKKDWYNIKAPSIFQVKNVYKTLISHTQRTNIASERL 181
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLI 121
KH FEVSLADLQ D+ + F+KI LRA+DVQ KN+LTNF +DFTT+ L+SL+ K QTL+
Sbjct: 182 KHIXFEVSLADLQRDKYHTFKKIHLRAKDVQRKNVLTNF*RIDFTTNXLKSLIPK*QTLM 361
Query: 122 EAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDL 181
+H+++KTT+NYTL +F I TK+ S+++K T YAQSS+IRQIR KM I++N +++ D+
Sbjct: 362 XSHINIKTTNNYTLEIFYINCTKKHSDRMKETYYAQSSRIRQIRNKMI*IIMNHSSAYDV 541
>BE330565 similar to GP|1856971|dbj This gene is specifically expressed at
the S phase during the cell cycle in the synchronous
culture, partial (46%)
Length = 355
Score = 181 bits (459), Expect = 3e-46
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +2
Query: 2 AVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGL 61
AVGKNKRISKGKKGGKKKA DPFAKKD YD KAP +F VKN+ ++L+SRT GT IAS L
Sbjct: 2 AVGKNKRISKGKKGGKKKADDPFAKKDCYDFKAPFLFHVKNIVRSLISRTHGTMIAS**L 181
Query: 62 KHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQT 119
KHRVFEV LADLQ DED++FRKIRLRA+D Q KN++TNFWGMD TTDKLRSLV +W+T
Sbjct: 182 KHRVFEVLLADLQWDEDHSFRKIRLRADDFQWKNVVTNFWGMDVTTDKLRSLVLQWRT 355
>BF070104 similar to GP|1856971|dbj This gene is specifically expressed at
the S phase during the cell cycle in the synchronous
culture, partial (42%)
Length = 379
Score = 163 bits (412), Expect = 8e-41
Identities = 84/126 (66%), Positives = 97/126 (76%)
Frame = +2
Query: 17 KKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGD 76
++ + DPFAKKDW D APSV VK + S GT++A EGL V EVSLADLQGD
Sbjct: 2 RRTSDDPFAKKDWCDNIAPSVV*VKEGWQHPPSPYSGTRMACEGLTLTVLEVSLADLQGD 181
Query: 77 EDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLR 136
ED+AF KI LRA+DVQGKN+LTNFW MDFTTDKLRSLVRKW +LI++HVDVKT D YTL
Sbjct: 182 EDHAFNKIMLRADDVQGKNVLTNFW*MDFTTDKLRSLVRKWSSLIDSHVDVKTAD*YTL* 361
Query: 137 MFCIGF 142
M CIG+
Sbjct: 362 MLCIGY 379
>AW307344 similar to PIR|T05287|T052 ribosomal protein S3a cytosolic -
Arabidopsis thaliana, partial (21%)
Length = 373
Score = 123 bits (308), Expect = 1e-28
Identities = 65/114 (57%), Positives = 81/114 (71%), Gaps = 3/114 (2%)
Frame = +2
Query: 146 RSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCDLKDLVRKFIPEMIGKEIEKATSSIY 205
R NQ ++T YAQ++Q+R IR+K I + ++CDL +LV KFIPE+IGKEIEKAT IY
Sbjct: 2 RPNQNRKTSYAQTAQVRAIRKKFIHIA-QRESNCDLNELVNKFIPEIIGKEIEKATQGIY 178
Query: 206 PLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGTKVERPADETMVEGTP 256
PLQNVFIRKVK L+APK D+GKL+E HG S DVG VER A+ + P
Sbjct: 179 PLQNVFIRKVKTLRAPKVDVGKLLESHGGADAVSSDVGKPVERAAEPAKTDKKP 340
>CD411293 homologue to PIR|T16958|T169 photosystem I psaH precursor - wood
tobacco, partial (55%)
Length = 632
Score = 112 bits (279), Expect = 2e-25
Identities = 54/59 (91%), Positives = 57/59 (96%)
Frame = +3
Query: 186 RKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVE 244
R FIPE+IGKEIEKATSSIYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG KV+
Sbjct: 456 RGFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGAKVD 632
>CK606263
Length = 303
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/34 (52%), Positives = 23/34 (66%), Gaps = 1/34 (2%)
Frame = -3
Query: 221 PKFDLGKLMEVHGDYSED-VGTKVERPADETMVE 253
PKFDLG L+ +HG+ S D G KVER E ++E
Sbjct: 298 PKFDLGTLLALHGESSTDEQGQKVEREFKERVLE 197
>TC215858 similar to UP|RPBY_ARATH (Q38859) DNA-directed RNA polymerase II
13.6 kDa polypeptide , partial (97%)
Length = 795
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -3
Query: 199 KATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKV 243
+ TS +YP N +++V+ L + K D+G +++H +EDV V
Sbjct: 322 RLTSGVYPDNNFVLKRVRKLVSGKQDIGVSVQLH---AEDVADSV 197
>TC213154 UP|Q7XY23 (Q7XY23) Cyc07, partial (5%)
Length = 822
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +2
Query: 43 VGKTLVSRTQGTKI 56
VGKTLVSRTQGTK+
Sbjct: 227 VGKTLVSRTQGTKV 268
>BU765286
Length = 249
Score = 27.7 bits (60), Expect = 5.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 120 LIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQI 161
+++AH+D+ T +Y + +F + + + N K QSS +
Sbjct: 202 VLQAHIDIATL*HYRIILF*YLYKRNKKNPYKNETLGQSSTV 77
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,629,486
Number of Sequences: 63676
Number of extensions: 90120
Number of successful extensions: 495
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC135798.2