BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135797.5 - phase: 0
(144 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205648 183 3e-47
TC205649 174 2e-44
CA936008 40 5e-04
CK605837 39 0.001
TC206039 37 0.003
CF920688 36 0.007
CA802337 35 0.012
CO978729 34 0.021
BM270199 34 0.021
CA818874 34 0.028
BM269751 34 0.028
BG653461 34 0.028
TC233465 similar to UP|Q9VAQ7 (Q9VAQ7) CG1420-PA, partial (3%) 33 0.036
BQ628077 33 0.036
CA819917 33 0.036
BI942698 33 0.036
BI941879 33 0.036
CO983030 33 0.047
AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica cu... 33 0.047
AW184904 33 0.047
>TC205648
Length = 935
Score = 183 bits (464), Expect = 3e-47
Identities = 98/146 (67%), Positives = 116/146 (79%), Gaps = 3/146 (2%)
Frame = +3
Query: 1 MYFTSQAPSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVK-NKKQPKSRK 59
+YF QAP +L SA+KGSR+K+G KL VKWA+DVYDP+PTL+SHTV+ NKKQ KSRK
Sbjct: 219 LYFIPQAPLKLISAMKGSREKHGGSQVKLNVKWASDVYDPIPTLLSHTVRSNKKQQKSRK 398
Query: 60 KKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDS--QVIEGSSEFDSLDV 117
KK EKKN KKG KGNS+RGG+ KD KQ R + G S LC KS DS +V+ S+E D+L+V
Sbjct: 399 KKPEKKNGKKGQKGNSSRGGSNKD-KQVRKLGGTSGLCYKSMDSCDKVLGASTELDALEV 575
Query: 118 CSQDSNCGSSFLKKSVTEVHYSVAEA 143
SQDS CG+SFLKKSVTEVHYSVAEA
Sbjct: 576 RSQDSYCGTSFLKKSVTEVHYSVAEA 653
>TC205649
Length = 1747
Score = 174 bits (440), Expect = 2e-44
Identities = 95/140 (67%), Positives = 111/140 (78%), Gaps = 3/140 (2%)
Frame = +2
Query: 7 APSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVK-NKKQPKSRKKKNEKK 65
AP +L A+KGSR+K+G KL VKWAADVYDPVPTL+SHTV+ NKKQ KSRKKK EKK
Sbjct: 1010 APLKLIPAIKGSREKHGGSQVKLNVKWAADVYDPVPTLLSHTVRSNKKQQKSRKKKPEKK 1189
Query: 66 NAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDS--QVIEGSSEFDSLDVCSQDSN 123
N KKG KGNS+RGG+ KD KQ R + G S LC KS DS +V+ ++E D+LDV SQDS
Sbjct: 1190 NGKKGQKGNSSRGGSSKD-KQFRKLGGTSGLCYKSMDSCDKVLGVATELDALDVRSQDSY 1366
Query: 124 CGSSFLKKSVTEVHYSVAEA 143
CG+SFLKKSVTE+HYSVAEA
Sbjct: 1367 CGTSFLKKSVTELHYSVAEA 1426
>CA936008
Length = 421
Score = 39.7 bits (91), Expect = 5e-04
Identities = 18/41 (43%), Positives = 23/41 (55%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNV 90
K KK+ K +KKK +KK KK K +GG G Q +NV
Sbjct: 50 KKKKKKKKKKKKKKKKKKKKKKKKKKKKGGGGPKNTQKKNV 172
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = +1
Query: 45 VSHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQ 104
V + K KK+ K +KKK +KK KK K +GG G K + +D C K +
Sbjct: 34 VKASEKKKKKKKKKKKKKKKKKKKKKKKKKKKKGGGGTKKHPKKKRFSLAD-C*KLLKQK 210
Query: 105 VIEGSSEFDSLDVCSQ 120
+ + +L + +Q
Sbjct: 211 KLGKTKNLPTLKIIAQ 258
>CK605837
Length = 498
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (57%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCG 92
K KK+ K +KKK +KK KK K + GGN + KK+ R G
Sbjct: 110 KKKKKKKKKKKKKKKKKKKKKKKKKRSPGGNPEKKKEIRGPRG 238
Score = 32.7 bits (73), Expect = 0.062
Identities = 19/51 (37%), Positives = 23/51 (44%), Gaps = 18/51 (35%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKG------------------NKGNSTRGGNGK 82
K KK+ K +KKK +KK KKG KG S +GG GK
Sbjct: 126 KKKKKKKKKKKKKKKKKKKKGPRGGTPKKKRKFGAPGGAKKGKSPKGGEGK 278
Score = 32.0 bits (71), Expect = 0.10
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +2
Query: 51 NKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
NKK+ K +KKK +KK KK K + K KK+ +
Sbjct: 59 NKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 172
Score = 26.2 bits (56), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKK 85
K KK+ K +KKK + KGNS G K K
Sbjct: 148 KKKKKKKKKKKKKVPGGEPRKKKGNSGPPGGQKKGK 255
>TC206039
Length = 834
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK+ K +KKKN KK KK K GG G KK +
Sbjct: 219 KKKKKKKKKKKKN*KKKKKKKKKKKXXXGGGGGTKKXQK 103
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = -3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK+ K +KKK +KK KK G GGN K K+ +
Sbjct: 202 KKKKKKKLKKKKKKKKKKKKXXXGG---GGNQKXXKRRK 95
>CF920688
Length = 521
Score = 35.8 bits (81), Expect = 0.007
Identities = 18/41 (43%), Positives = 22/41 (52%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNV 90
K KK+ K +KKK +KKN KK K G G K Q R +
Sbjct: 161 KKKKKKKKKKKKKKKKN*KKKKKKKKVPGRGGPPKGQFRQI 283
>CA802337
Length = 381
Score = 35.0 bits (79), Expect = 0.012
Identities = 17/41 (41%), Positives = 23/41 (55%)
Frame = +2
Query: 48 TVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
TVK KK+ K +KKK +KK KK K + K KK+ +
Sbjct: 35 TVKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 157
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDK 84
K KK+ K +KKK +KK KK K GG K K
Sbjct: 122 KKKKKKKKKKKKKKKKKKKKKKKKKKKXGGV*KKK 226
Score = 30.8 bits (68), Expect = 0.23
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGK 82
K KK+ K +KKK +KK K GGNGK
Sbjct: 153 KKKKKKKKKKKKKKKKXGGGFKKKKFLXGGNGK 251
>CO978729
Length = 377
Score = 34.3 bits (77), Expect = 0.021
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKK 85
K KK+ K +KKK +KKN KK K + K KK
Sbjct: 116 KKKKKKKKKKKKKKKKNQKKKKKKKKKKXXKNKKKK 223
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTR 77
KN+K+ K +KKK KN KK K +R
Sbjct: 161 KNQKKKKKKKKKKXXKNKKKKXKCTXSR 244
Score = 25.8 bits (55), Expect = 7.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 48 TVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQ 86
T K KK K +KKK +KK KK K + KKQ
Sbjct: 103 TCKGKK--KKKKKKKKKKKKKKKPKKKKKKKKKKXXKKQ 213
>BM270199
Length = 360
Score = 34.3 bits (77), Expect = 0.021
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKD 83
K KK+ K +KKK +KK KK K RGG ++
Sbjct: 6 KKKKKKKKKKKKKKKKKKKKKKKKKKKRGGGARN 107
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KKN G S + G
Sbjct: 37 KKKKKKKKKKKKKKKKNGGGGPGTQSPQKG 126
>CA818874
Length = 444
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDK 84
K KK+ K +KKK +KK KK K +GG K K
Sbjct: 189 KKKKKKKKKKKKKKKKKKKKKKKKKKKKGGAPKKK 293
Score = 33.1 bits (74), Expect = 0.047
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCG 92
K KK+ K +KKK +KK KK K +GG G KK + N G
Sbjct: 188 KKKKKKKKKKKKKKKKKKKKKKKKKKKKGG-GP*KKTNFNPRG 313
Score = 32.3 bits (72), Expect = 0.080
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = +2
Query: 45 VSHTVK--NKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
+SH + NKK+ K +KKK +KK KK K + K KK+ +
Sbjct: 110 LSHVTEFGNKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 247
>BM269751
Length = 394
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 47 HTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQS 87
+TVK KK+ K +KKK +KK KK K + K +K++
Sbjct: 80 YTVKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKA 202
>BG653461
Length = 394
Score = 33.9 bits (76), Expect = 0.028
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KKN +G K S GG
Sbjct: 36 KKKKKKKKKKKKKKKKNGGRGRKQKSPLGG 125
>TC233465 similar to UP|Q9VAQ7 (Q9VAQ7) CG1420-PA, partial (3%)
Length = 719
Score = 33.5 bits (75), Expect = 0.036
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRN 89
K KK+ K +KKK +KK KK K + K KKQ+++
Sbjct: 701 KKKKKKKKKKKKKKKKKKKKKTKKKKKKKKKTKKKKQTQH 582
Score = 33.1 bits (74), Expect = 0.047
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK+ K +KKK +KK KK K + K KKQ +
Sbjct: 715 KKKKKKKKKKKKKKKKKKKKKKKKKKPKKKKKKKKKQKK 599
Score = 30.0 bits (66), Expect = 0.40
Identities = 18/41 (43%), Positives = 22/41 (52%)
Frame = -3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNV 90
K KK+ +KKK +KKN KK K NST K Q+ V
Sbjct: 657 KKKKKKNQKKKKKKKKNKKK--KTNSTPXXXKKKANQTFTV 541
Score = 28.9 bits (63), Expect = 0.89
Identities = 16/46 (34%), Positives = 21/46 (44%)
Frame = -2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSD 95
K KK+ K +KKK +KK KK K + K GQS+
Sbjct: 688 KKKKKKKKKKKKKKKKKPKKKKKKKKKQKKKNKLNTXXXQKKGQSN 551
>BQ628077
Length = 323
Score = 33.5 bits (75), Expect = 0.036
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTR 77
K KK+ K +KKK +KK KK KGN +
Sbjct: 8 KKKKKKKKKKKKKKKKKRKKNQKGNKKK 91
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRG 78
K KK+ K +KKK ++K +KGNK G
Sbjct: 17 KKKKKKKKKKKKKKRKKNQKGNKKKRLAG 103
Score = 28.9 bits (63), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 52 KKQPKSRKKKNEKKNAKKGNK 72
KK+ K +KKK +KK KKG K
Sbjct: 6 KKKKKKKKKKKKKKKKKKGKK 68
Score = 28.1 bits (61), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGN 80
K KK+ K +KKK + K K+G K + G +
Sbjct: 18 KKKKKKKKKKKKKKGKKTKRGTKKSGWPGAS 110
>CA819917
Length = 418
Score = 33.5 bits (75), Expect = 0.036
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KK KK K RGG
Sbjct: 21 KKKKKKKKKKKKKKKKKKKKKKKKKKARGG 110
>BI942698
Length = 353
Score = 33.5 bits (75), Expect = 0.036
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +3
Query: 49 VKNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
+K KK+ K +KKK +KK KK K RGG
Sbjct: 96 LKKKKKKKKKKKKKKKKKKKKKKKKKKPRGG 188
Score = 25.8 bits (55), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKG 70
K KK+ K +KKK +KKN G
Sbjct: 127 KKKKKKKKKKKKKKKKNLGGG 189
>BI941879
Length = 257
Score = 33.5 bits (75), Expect = 0.036
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 52 KKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKK 85
KK+ K +KKK +KK KK K RGG K K
Sbjct: 5 KKKKKKKKKKKKKKKKKKKKKKKKKRGGRFKGSK 106
Score = 28.9 bits (63), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKG 70
K KK+ K +KKK +KK KKG
Sbjct: 22 KKKKKKKKKKKKKKKKKKKKG 84
Score = 28.9 bits (63), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKG 70
K KK+ K +KKK +KK KKG
Sbjct: 21 KKKKKKKKKKKKKKKKKKKKG 83
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNK 72
K KK+ K +KKK +KK K+G +
Sbjct: 23 KKKKKKKKKKKKKKKKKKKRGGR 91
>CO983030
Length = 505
Score = 33.1 bits (74), Expect = 0.047
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K KK+ K +KKK +KK KK K + K KKQ +
Sbjct: 179 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKK 295
>AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica
cultivar-group)}, partial (24%)
Length = 235
Score = 33.1 bits (74), Expect = 0.047
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KK KK K RGG
Sbjct: 82 KKKKKKKKKKKKKKKKKKKKKKKKKKKRGG 171
Score = 32.7 bits (73), Expect = 0.062
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 38 YDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
Y+P K KK+ K +KKK +KK KK K + K KK+ +
Sbjct: 12 YNPSSVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 164
Score = 32.0 bits (71), Expect = 0.10
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KK KK K +GG
Sbjct: 80 KKKKKKKKKKKKKKKKKKKKKKKKKKKKGG 169
>AW184904
Length = 365
Score = 33.1 bits (74), Expect = 0.047
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGG 79
K KK+ K +KKK +KK KK K RGG
Sbjct: 27 KKKKKKKKKKKKKKKKKKKKKKKKKKKRGG 116
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = +1
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCG 92
K +KKK EKK KK K + K KK+ + G
Sbjct: 1 KKKKKKEEKKKKKKKKKKKKKKKKKKKKKKKKKKKKG 111
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.305 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,214,454
Number of Sequences: 63676
Number of extensions: 78820
Number of successful extensions: 737
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of query: 144
length of database: 12,639,632
effective HSP length: 88
effective length of query: 56
effective length of database: 7,036,144
effective search space: 394024064
effective search space used: 394024064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135797.5