BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135796.1 - phase: 0 /pseudo
(149 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neon... 85 1e-17
TC211406 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9... 73 6e-14
TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 70 3e-13
TC206987 homologue to UP|Q75UJ4 (Q75UJ4) ERF-like protein, parti... 70 5e-13
TC220487 homologue to UP|AP23_ARATH (P42736) AP2 domain transcri... 70 5e-13
TC215012 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 69 6e-13
TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 69 8e-13
TC225486 similar to UP|Q70AB2 (Q70AB2) Ethylene transcription fa... 68 1e-12
TC220137 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 68 1e-12
TC208768 homologue to UP|Q75UJ4 (Q75UJ4) ERF-like protein, parti... 68 1e-12
TC215013 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 67 2e-12
TC225490 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive pro... 67 2e-12
BF324075 homologue to GP|28274830|gb| ethylene response factor 2... 67 2e-12
CF806953 67 2e-12
TC228091 similar to GB|AAM52243.1|21464577|AY120700 AT4g34410/F1... 67 2e-12
TC225489 similar to UP|Q8GTE5 (Q8GTE5) Transcription factor EREB... 67 3e-12
TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, p... 67 3e-12
TC225578 similar to UP|AP23_ARATH (P42736) AP2 domain transcript... 67 4e-12
TC204035 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive... 65 1e-11
TC233981 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9... 64 3e-11
>TC207982 similar to UP|Q8CBH3 (Q8CBH3) Mus musculus 16 days neonate
cerebellum cDNA, RIKEN full-length enriched library,
clone:9630027A13 product:RAB5A, member RAS oncogene
family, full insert sequence. (Fragment), partial (6%)
Length = 770
Score = 85.1 bits (209), Expect = 1e-17
Identities = 49/134 (36%), Positives = 69/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 18 ESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYV 77
++K R L+++ D DATD DE ++ + T R E+T + L L+ SF
Sbjct: 221 KTKTQRRLLRIIVTDHDATDSDSDEEEEQQQQTARVKREIT---QINMQLPLSYNRSFPS 391
Query: 78 KPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTG--RRSCAKYRGVRMRPWGKWAAEIRDPF 135
+ C S + K P + RR K+RGVR RPWG+WAAEIRDP
Sbjct: 392 SSSYYSSASACTSSEQNLKCKRPNKKPPPFSAVVRRRNNKFRGVRQRPWGRWAAEIRDPT 571
Query: 136 RNVRIWLGTYNSAE 149
R R+WLGT+++AE
Sbjct: 572 RRKRLWLGTFDTAE 613
>TC211406 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9D16_220
{Arabidopsis thaliana;} , partial (24%)
Length = 1012
Score = 72.8 bits (177), Expect = 6e-14
Identities = 49/145 (33%), Positives = 74/145 (50%), Gaps = 11/145 (7%)
Frame = +2
Query: 16 LKESKLMTRK------LQLVFDDPDATDVSEDESQQSRTTTKRSFF----EVTLPPRAPA 65
+KE L+ +K +++ D DATD S D+ + S ++T+R E+T+
Sbjct: 155 MKEETLLKKKHHYPKIIRIRVTDADATDSSSDDDEPSMSSTRRRVKNFVNEITIQGGGGG 334
Query: 66 ALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAK-YRGVRMRPW 124
+ V +K ++ + +P R++ AK +RGVR RPW
Sbjct: 335 GGDVN-----------VVSKK----------RRFKSGAGAPLCRRKTGAKKFRGVRQRPW 451
Query: 125 GKWAAEIRDPFRNVRIWLGTYNSAE 149
GKWAAEIRDP R VR+WLGTY++AE
Sbjct: 452 GKWAAEIRDPSRRVRLWLGTYDTAE 526
>TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (25%)
Length = 925
Score = 70.5 bits (171), Expect = 3e-13
Identities = 41/111 (36%), Positives = 59/111 (52%)
Frame = +3
Query: 39 SEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKK 98
S++E QQ + T+R E+T + L L+ +SF + T + +
Sbjct: 6 SDEEQQQQQQKTRRVNREIT---QINMQLPLSHNSSFSPSSSYYSSASTSSEQNLKCKRP 176
Query: 99 VVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+ S RR K+RGVR RPWG+WAAEIRDP R R+WLGT+++AE
Sbjct: 177 NKKPPPSSAEARRR-NKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAE 326
>TC206987 homologue to UP|Q75UJ4 (Q75UJ4) ERF-like protein, partial (39%)
Length = 853
Score = 69.7 bits (169), Expect = 5e-13
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = +1
Query: 79 PKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNV 138
P+ R T + P+ ++ Q P +R YRG+R RPWGKWAAEIRDP + V
Sbjct: 46 PRQRPRTLTASELWPKRSEPQPQPPPPPVKRQRKNL-YRGIRQRPWGKWAAEIRDPRKGV 222
Query: 139 RIWLGTYNSAE 149
R+WLGT+N+AE
Sbjct: 223 RVWLGTFNTAE 255
>TC220487 homologue to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (31%)
Length = 510
Score = 69.7 bits (169), Expect = 5e-13
Identities = 31/54 (57%), Positives = 39/54 (71%)
Frame = +1
Query: 96 NKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
N+ V + + TGR YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 223 NQGVKLKALTLNTGRVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 384
>TC215012 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
partial (44%)
Length = 651
Score = 69.3 bits (168), Expect = 6e-13
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Frame = +2
Query: 31 DDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLS 90
DD + DV +++ ++ K+ F + S N KP LS
Sbjct: 299 DDSEIEDVDDEDDEEEEELKKKKPFGFS-----------RSNNKAASKP---------LS 418
Query: 91 VQPQTNKKVVQTSTSPTTGRRSCA-KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
T K V + +R +YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 419 RGATTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 598
>TC221817 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (24%)
Length = 1008
Score = 68.9 bits (167), Expect = 8e-13
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +1
Query: 109 GRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
GRR KYRGVR RPWGKWAAEIRDPF+ R+WLGT+ +AE
Sbjct: 502 GRR---KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAE 615
>TC225486 similar to UP|Q70AB2 (Q70AB2) Ethylene transcription factor,
partial (49%)
Length = 1458
Score = 68.2 bits (165), Expect = 1e-12
Identities = 27/43 (62%), Positives = 35/43 (80%)
Frame = +1
Query: 107 TTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+ R+ +YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 322 SANRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 450
>TC220137 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (17%)
Length = 757
Score = 68.2 bits (165), Expect = 1e-12
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +1
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
KYRGVR RPWGKWAAEIRDPF+ R+WLGT+ +AE
Sbjct: 70 KYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAE 174
>TC208768 homologue to UP|Q75UJ4 (Q75UJ4) ERF-like protein, partial (38%)
Length = 617
Score = 68.2 bits (165), Expect = 1e-12
Identities = 33/63 (52%), Positives = 41/63 (64%), Gaps = 5/63 (7%)
Frame = +2
Query: 92 QPQTNK-----KVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYN 146
QP T K KV + + R+ YRG+R RPWGKWAAEIRDP + VR+WLGT+N
Sbjct: 287 QPSTLKRSQPPKVSEQVENKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFN 466
Query: 147 SAE 149
+AE
Sbjct: 467 TAE 475
>TC215013 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
complete
Length = 1999
Score = 67.4 bits (163), Expect = 2e-12
Identities = 38/119 (31%), Positives = 58/119 (47%)
Frame = +3
Query: 31 DDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLS 90
DD + DV +++ + K+ F S++S K ++R +
Sbjct: 405 DDSEIEDVDDEDDEDEEELKKKPFG--------------FSRSSNKAASKPLSRGSATVE 542
Query: 91 VQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+ Q K R+ +YRG+R RPWGKWAAEIRDP + VR+WLGT+++AE
Sbjct: 543 SKGQAEK---------CAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAE 692
>TC225490 homologue to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
partial (64%)
Length = 865
Score = 67.4 bits (163), Expect = 2e-12
Identities = 38/119 (31%), Positives = 58/119 (47%)
Frame = +3
Query: 31 DDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRRKTCLS 90
DD + DV +++ + K+ F S++S K ++R +
Sbjct: 273 DDSEIEDVDDEDDEDEEELKKKPFG--------------FSRSSNKAASKPLSRGSATVE 410
Query: 91 VQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+ Q K R+ +YRG+R RPWGKWAAEIRDP + VR+WLGT+++AE
Sbjct: 411 SKGQAEK---------CAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAE 560
>BF324075 homologue to GP|28274830|gb| ethylene response factor 2
{Lycopersicon esculentum}, partial (31%)
Length = 419
Score = 67.4 bits (163), Expect = 2e-12
Identities = 32/66 (48%), Positives = 43/66 (64%)
Frame = +1
Query: 84 RRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLG 143
++++ L + P K Q P +R YRG+R RPWGKWAAEIRDP + VR+WLG
Sbjct: 148 QQRSTLKMSPPP-KASEQVENKPVKRQRKNL-YRGIRQRPWGKWAAEIRDPRKGVRVWLG 321
Query: 144 TYNSAE 149
T+N+AE
Sbjct: 322 TFNTAE 339
>CF806953
Length = 666
Score = 67.4 bits (163), Expect = 2e-12
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Frame = +3
Query: 99 VVQTSTSPTTGRRSCA-----KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
VV ++S T G S +YRGVR RPWGKWAAEIRDP + R+WLGT+++AE
Sbjct: 327 VVAAASSQTQGNESGGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAE 494
>TC228091 similar to GB|AAM52243.1|21464577|AY120700 AT4g34410/F10M10_180
{Arabidopsis thaliana;} , partial (30%)
Length = 1025
Score = 67.4 bits (163), Expect = 2e-12
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +1
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+R+ KYRGVR RPWGKWAAEIRDP R R+WLGT+ +AE
Sbjct: 340 KRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFGTAE 459
>TC225489 similar to UP|Q8GTE5 (Q8GTE5) Transcription factor EREBP-like
protein (Fragment), partial (40%)
Length = 893
Score = 67.0 bits (162), Expect = 3e-12
Identities = 26/34 (76%), Positives = 31/34 (90%)
Frame = +2
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 2 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 103
>TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, partial (31%)
Length = 1156
Score = 67.0 bits (162), Expect = 3e-12
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +2
Query: 94 QTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+ KK ++ + GR YRG+R RPWGKWAAEIRDP + VR+WLGT+ +AE
Sbjct: 311 EKKKKKSVSAEKKSGGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAE 478
>TC225578 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (38%)
Length = 1111
Score = 66.6 bits (161), Expect = 4e-12
Identities = 30/65 (46%), Positives = 39/65 (59%)
Frame = +3
Query: 85 RKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGT 144
+K S + + V +GR YRG+R RPWGKWAAEIRDP + VR+WLGT
Sbjct: 261 KKVVSSCEKKKKSVVGAEKKKSDSGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGT 440
Query: 145 YNSAE 149
+ +AE
Sbjct: 441 FPTAE 455
>TC204035 homologue to UP|ERF4_ARATH (O80340) Ethylene responsive element
binding factor 4 (AtERF4), partial (37%)
Length = 1004
Score = 65.1 bits (157), Expect = 1e-11
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 60 PPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKK--VVQTSTSPTTGRRSCAKYR 117
P P +L S F T + +K L N+ VV ++PT R +YR
Sbjct: 67 PSLKPTYTALLSDQFFLGLRITNSSKKLTLMAPRDINRSNVVVAGGSNPT---RKEIRYR 237
Query: 118 GVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
GVR RPWG++AAEIRDP + R+WLGT+++AE
Sbjct: 238 GVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAE 333
>TC233981 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9D16_220
{Arabidopsis thaliana;} , partial (21%)
Length = 514
Score = 63.5 bits (153), Expect = 3e-11
Identities = 32/65 (49%), Positives = 43/65 (65%), Gaps = 1/65 (1%)
Frame = +2
Query: 86 KTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPF-RNVRIWLGT 144
+T S + + K + + S + + R K+RGVR RP GKW+AEIRDP R VR+WLGT
Sbjct: 182 QTNFSTRHRHRKLINEISIARASDTRRGQKFRGVRQRPLGKWSAEIRDPSQRGVRLWLGT 361
Query: 145 YNSAE 149
YN+AE
Sbjct: 362 YNTAE 376
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.126 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,076,774
Number of Sequences: 63676
Number of extensions: 76781
Number of successful extensions: 723
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of query: 149
length of database: 12,639,632
effective HSP length: 89
effective length of query: 60
effective length of database: 6,972,468
effective search space: 418348080
effective search space used: 418348080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135796.1