BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.7 - phase: 0
(591 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport... 442 e-124
TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier pr... 434 e-122
TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial... 397 e-111
TC220216 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport... 381 e-106
TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier pr... 350 1e-96
BG839278 homologue to GP|25986771|gb auxin efflux carrier protei... 224 1e-58
TC211544 weakly similar to UP|Q84YG8 (Q84YG8) Auxin efflux carri... 223 1e-58
TC234581 homologue to UP|Q84YG8 (Q84YG8) Auxin efflux carrier pr... 204 1e-52
TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partia... 191 8e-49
TC222695 weakly similar to UP|Q6ZIB5 (Q6ZIB5) PIN1-like auxin tr... 186 3e-47
AW596376 weakly similar to GP|10441744|gb| PIN1-like auxin trans... 124 1e-28
BI974039 similar to GP|25956262|dbj PIN1-like auxin transport pr... 102 4e-22
BE191508 similar to GP|10441744|gb| PIN1-like auxin transport pr... 94 2e-19
BU761996 similar to GP|28301753|gb| auxin efflux carrier protein... 93 3e-19
TC231645 similar to UP|AEC1_ARATH (Q9C6B8) Auxin efflux carrier ... 67 2e-11
BI427388 homologue to GP|21435938|gb| PIN1-like auxin transport ... 40 0.004
TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding p... 34 0.21
TC215890 similar to PIR|F96770|F96770 protein RNA-binding protei... 33 0.46
TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 33 0.46
TC218891 homologue to UP|GAC1_YEAST (P28006) Protein phosphatase... 32 0.79
>TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport protein,
partial (41%)
Length = 817
Score = 442 bits (1136), Expect = e-124
Identities = 222/244 (90%), Positives = 231/244 (93%)
Frame = +2
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ DLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct: 89 MITLWDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 268
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
TNNPY MNY+FIAADSLQK I+L +L +WSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL
Sbjct: 269 TNNPYAMNYKFIAADSLQKAIVLAVLLVWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 448
Query: 121 LKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDSD 180
LKGMYGD SGTLMVQIVVLQCIIWYTLMLFLFEYRGAR+LI EQFPDTA SIISFKVDSD
Sbjct: 449 LKGMYGDASGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIGEQFPDTAASIISFKVDSD 628
Query: 181 VLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTNA 240
++SLDGKEPLQTEAEVG+DGKLHV VRKS SSRSEIFSRRSHG NS VSLTPRPSNLTNA
Sbjct: 629 IISLDGKEPLQTEAEVGDDGKLHVTVRKSASSRSEIFSRRSHGPNS-VSLTPRPSNLTNA 805
Query: 241 EIYS 244
EIYS
Sbjct: 806 EIYS 817
>TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier protein PIN1,
partial (56%)
Length = 1532
Score = 434 bits (1117), Expect = e-122
Identities = 258/404 (63%), Positives = 288/404 (70%), Gaps = 41/404 (10%)
Frame = +2
Query: 229 SLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGSL----- 283
S TPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSM+ G R SNFG+
Sbjct: 14 STTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGG----RNSNFGASDVYGL 181
Query: 284 -----------GFDEESGVAKANGN--GGNG-YPAPHSAGIFSPV---------ANKKKG 320
+DE+ G K + + GG G YPAP+ G+FSP AN K+
Sbjct: 182 SASRGPTPRPSNYDEDGGKPKFHYHAAGGTGHYPAPNP-GMFSPSNGSKSVAANANAKRP 358
Query: 321 HGGGA---GDGGKDLHMFVWSSSASPVSEG-GIHVFRGGGDYGNDQLN---GVAH----- 368
+G DG +DLHMFVWSSSASPVS+ G H + GG D +LN G
Sbjct: 359 NGQAQLKPEDGNRDLHMFVWSSSASPVSDVFGAHEYGGGHDQKEVKLNVSPGKVENNHRD 538
Query: 369 -QKDYEEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTNMPPA 427
Q+DY E DEFSFGNR + D+E +++L G+ KP MPPA
Sbjct: 539 TQEDYLE--KDEFSFGNREM----DRE---MNQLEGEKV----------GDGKPKTMPPA 661
Query: 428 SVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMA 487
SVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSF+WNV MPAI+AKSI+ILSDAGLGMA
Sbjct: 662 SVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFKWNVEMPAIIAKSISILSDAGLGMA 841
Query: 488 MFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAAL 547
MFSLGLFMALQPR+IACGN+ A+FAMAVRFLTGPAVMA +S VGL+GVLLH+AIVQAAL
Sbjct: 842 MFSLGLFMALQPRVIACGNSTAAFAMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAAL 1021
Query: 548 PQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 591
PQGIVPFVFAKEYNVHPDILST VIFGMLIALPITLVYYILLGL
Sbjct: 1022PQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL 1153
>TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial (52%)
Length = 992
Score = 397 bits (1019), Expect = e-111
Identities = 221/335 (65%), Positives = 253/335 (74%), Gaps = 33/335 (9%)
Frame = +1
Query: 45 FVALFAVPLLSFHFISTNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITL 104
FVALFAVPLLSFHFI++NNPY MN RF+AAD+LQK IIL LL +WS + RG LEW+ITL
Sbjct: 4 FVALFAVPLLSFHFIASNNPYEMNLRFLAADTLQKIIILVLLAVWSNITKRGCLEWAITL 183
Query: 105 FSLSTLPNTLVMGIPLLKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQ 164
FSLSTLPNTLVMGIPLLKGMYGD SG+LMVQIVVLQCIIWYTLMLFLFE+RGAR+LI EQ
Sbjct: 184 FSLSTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFLFEFRGARMLISEQ 363
Query: 165 FPDTAGSIISFKVDSDVLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGV 224
FPDTA SI+S VDSDV+SLDG++PL+TEAE+ EDGKLHV VRKS +SRS+IFSRRS G+
Sbjct: 364 FPDTAASIVSIHVDSDVMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGL 543
Query: 225 NSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGS-- 282
+ S TPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSM+ G R SNFG+
Sbjct: 544 S---STTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAG----GRNSNFGASD 702
Query: 283 --------------LGFDEESGVAKANGN-GGNG-YPAPHSAGIFSPV------------ 314
+DE+ G K + + GG G YPAP + G+FSP
Sbjct: 703 VYGLSASRGPTPRPSNYDEDGGKPKFHYHAGGTGHYPAP-NPGMFSPSNGSKSVAAANAN 879
Query: 315 ANKKKGHGGG---AGDGGKDLHMFVWSSSASPVSE 346
AN K+ +G DG +DLHMFV SSSASPVS+
Sbjct: 880 ANAKRPNGQAQLKPEDGNRDLHMFV*SSSASPVSD 984
>TC220216 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport protein,
partial (36%)
Length = 970
Score = 381 bits (978), Expect = e-106
Identities = 196/211 (92%), Positives = 203/211 (95%)
Frame = +2
Query: 381 SFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTNMPPASVMTRLILIMVWR 440
SFGNRTVANGVDKEGPVLSKLGSSST EL PKA QGEAKPT+MPP SVMTRLILIMVWR
Sbjct: 2 SFGNRTVANGVDKEGPVLSKLGSSSTAELRPKA--QGEAKPTSMPPTSVMTRLILIMVWR 175
Query: 441 KLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPR 500
KLIRNPNTYSSL GLTWSL+SF+WNVVMPAIVAKSI+ILSDAGLGMAMFSLGLFMALQP+
Sbjct: 176 KLIRNPNTYSSLFGLTWSLISFKWNVVMPAIVAKSISILSDAGLGMAMFSLGLFMALQPK 355
Query: 501 IIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEY 560
IIACGN+VASFAMAVRFLTGPAVMA +S VVGLRGVLLHIAIVQAALPQGIVPFVFAKEY
Sbjct: 356 IIACGNSVASFAMAVRFLTGPAVMAVASIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEY 535
Query: 561 NVHPDILSTGVIFGMLIALPITLVYYILLGL 591
NVHPDILSTGVIFGMLIALPITLVYYILLGL
Sbjct: 536 NVHPDILSTGVIFGMLIALPITLVYYILLGL 628
>TC204675 homologue to UP|Q8GV76 (Q8GV76) Auxin efflux carrier protein,
partial (40%)
Length = 2164
Score = 350 bits (897), Expect = 1e-96
Identities = 199/303 (65%), Positives = 222/303 (72%), Gaps = 24/303 (7%)
Frame = +1
Query: 313 PVANKKKGHGGGAGDGGKDLHMFVWSSSASPVSE-GGIHVFRGGGDYGNDQLNGVAHQKD 371
P + G A K+LHMFVWSSS SPVSE GG+HVF G D+G +G + Q
Sbjct: 145 PQVAQPTNSGNKANHDAKELHMFVWSSSTSPVSEAGGLHVF-SGADFGASDQSGRSEQGA 321
Query: 372 YE--------------------EFGHDEFSFGNRT--VANGVDKEGPV-LSKLGSSSTTE 408
E EFG +E F + A G +K GP L+KLGSSST E
Sbjct: 322 KEIRMLVADDHPQNGETNKAEGEFGGEELKFPGKEGEQAEG-EKAGPGGLNKLGSSSTAE 498
Query: 409 LHPKAGSQGEAKPTNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVM 468
LHPK+ K +MPPASVMTRLILIMVWRKLIRNPNTYSSLIG+ WSLV+FRW+V M
Sbjct: 499 LHPKSAVAVAGK--HMPPASVMTRLILIMVWRKLIRNPNTYSSLIGVIWSLVAFRWHVQM 672
Query: 469 PAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSS 528
P I+ KSI+ILSDAGLGMAMFSLGLFMALQP+IIACGN+VA+FAMAVRFLTGPAVMA +S
Sbjct: 673 PKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFLTGPAVMAAAS 852
Query: 529 FVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYIL 588
VGLRG LL +AIVQAALPQGIVPFVFAKEYNVHP ILST VIFGMLIALPITL+YYIL
Sbjct: 853 IAVGLRGTLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYIL 1032
Query: 589 LGL 591
LGL
Sbjct: 1033LGL 1041
>BG839278 homologue to GP|25986771|gb auxin efflux carrier protein {Medicago
truncatula}, partial (19%)
Length = 744
Score = 224 bits (570), Expect = 1e-58
Identities = 109/143 (76%), Positives = 124/143 (86%)
Frame = +2
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ D Y V++AV+PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 314 MITWGDFYTVMSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 493
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
NNPY MN+RFIAAD+LQK I+L L IW+ S+ GSLEW IT+FSLSTLPNTLVMGIPL
Sbjct: 494 LNNPYAMNFRFIAADTLQKIIMLFALAIWTNFSANGSLEWMITIFSLSTLPNTLVMGIPL 673
Query: 121 LKGMYGDDSGTLMVQIVVLQCII 143
L MYG+ SG LMVQ+VV QCII
Sbjct: 674 LIAMYGEYSGLLMVQVVVXQCII 742
>TC211544 weakly similar to UP|Q84YG8 (Q84YG8) Auxin efflux carrier protein,
partial (26%)
Length = 573
Score = 223 bits (569), Expect = 1e-58
Identities = 104/165 (63%), Positives = 133/165 (80%)
Frame = +3
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI + +Y+++ A+VPLYV MILAY SV WWKIFTP+QCSGINR VAL++VP L+F+F++
Sbjct: 78 MIDGVAIYNIVAALVPLYVPMILAYASVLWWKIFTPEQCSGINRLVALYSVPFLNFNFLA 257
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
NNPY MN RFIAAD+LQK IIL LF+WS + G+L+ +ITLFS ST PNTL++G+P
Sbjct: 258 FNNPYAMNLRFIAADTLQKVIILGALFLWSAFTKCGNLD*TITLFSFSTFPNTLIVGVPF 437
Query: 121 LKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQF 165
L MYGD SG+LM QI V+Q ++W+TLMLFL+EYRGA+ LI QF
Sbjct: 438 LTAMYGDSSGSLMSQIFVMQGVVWFTLMLFLYEYRGAKSLISNQF 572
>TC234581 homologue to UP|Q84YG8 (Q84YG8) Auxin efflux carrier protein,
partial (21%)
Length = 595
Score = 204 bits (518), Expect = 1e-52
Identities = 102/129 (79%), Positives = 118/129 (91%)
Frame = +2
Query: 463 RWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPA 522
R ++ MP IV SI+ILSDAGLGMAMFSLGLFMALQP+IIACG +VA+F+MAVRFLTGPA
Sbjct: 2 RGHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPA 181
Query: 523 VMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPIT 582
V+A +S +GLRGVLLH+AIVQAALPQGIVPFVFAKEYN+H DILST VIFGMLIALPIT
Sbjct: 182 VIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPIT 361
Query: 583 LVYYILLGL 591
++YY+LLG+
Sbjct: 362 ILYYVLLGV 388
>TC220979 similar to UP|Q7X9P6 (Q7X9P6) PIN1-like protein, partial (25%)
Length = 660
Score = 191 bits (485), Expect = 8e-49
Identities = 121/208 (58%), Positives = 136/208 (65%), Gaps = 32/208 (15%)
Frame = +2
Query: 324 GAGDGGKDLHMFVWSSSASPVSEG-GIHVFRGGGDYGNDQL------------------- 363
GA D K+LHMFVWSSSASPVSE G++VF G + G Q
Sbjct: 41 GAHDA-KELHMFVWSSSASPVSENAGLNVF-GNTELGTSQQPDQGGAKEIRMLVADNHAH 214
Query: 364 --NGVAHQKDYEEFGHD--EFSF---GNRTVANGVDKE----GPVLSKLGSSSTTELHPK 412
NG A+ K E G D EF F G V +KE L+KLGSSST ELHPK
Sbjct: 215 LQNGEANNKGGLEAGLDVEEFKFPVNGGEQVEEEKEKEKEGLNNGLNKLGSSSTAELHPK 394
Query: 413 AGSQGEAKPT-NMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVMPAI 471
A EA + +MPPASVMTRLILIMVWRKLIRNPNTYSSLIG+ WSL++FRW+V MP I
Sbjct: 395 AAGAAEAPASKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGVVWSLIAFRWHVHMPKI 574
Query: 472 VAKSIAILSDAGLGMAMFSLGLFMALQP 499
+ KSI+ILSDAGLGMAMFSLGLFMALQP
Sbjct: 575 IEKSISILSDAGLGMAMFSLGLFMALQP 658
>TC222695 weakly similar to UP|Q6ZIB5 (Q6ZIB5) PIN1-like auxin transport
protein-like, partial (41%)
Length = 1059
Score = 186 bits (471), Expect = 3e-47
Identities = 90/206 (43%), Positives = 135/206 (64%), Gaps = 10/206 (4%)
Frame = +1
Query: 394 EGPVLSKLGSSSTTELHPKAGSQG------EAKPTNMPPASVMTRL----ILIMVWRKLI 443
EG + + S T ++ G G + K M SV +RL ++ +VWRKL
Sbjct: 304 EGTTTTTVKPRSKTMINKNEGGGGKDVEAVDVKEELMLEESVTSRLPFCKVMKLVWRKLA 483
Query: 444 RNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIA 503
NPN+Y +IG++W+ +S RWN+ MP+++ SI I+S AG G AMFS+G+FMALQ ++IA
Sbjct: 484 TNPNSYGCVIGISWAFISNRWNLEMPSMLEGSIQIMSKAGTGTAMFSMGIFMALQEKLIA 663
Query: 504 CGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVH 563
CG ++ + ++F+ GPA A + VGLRG +L + I+QAA+PQ I F+FAKEY +H
Sbjct: 664 CGPSMTLIGLVLKFIAGPAATAIGAIAVGLRGDVLRVVIIQAAVPQSITSFIFAKEYGLH 843
Query: 564 PDILSTGVIFGMLIALPITLVYYILL 589
P++LST VIFGM+++LP+ + YY +L
Sbjct: 844 PEVLSTAVIFGMIVSLPVLVAYYAIL 921
Score = 61.2 bits (147), Expect(2) = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +2
Query: 62 NNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPLL 121
N+ MN+ FIAAD++ K II+ +L +W++ + + + WSI FSL L N +V+G+P++
Sbjct: 11 NSARGMNFSFIAADTISKFIIMVVLALWAKCTPKCTFCWSIISFSLCNLTNAVVVGVPMV 190
Query: 122 KGMY 125
K MY
Sbjct: 191 KPMY 202
Score = 28.9 bits (63), Expect(2) = 3e-12
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 5/70 (7%)
Frame = +1
Query: 132 LMVQIVVLQCIIWYTLMLFLFEY-----RGARILIVEQFPDTAGSIISFKVDSDVLSLDG 186
L+VQ VLQ IW L+LF+ E+ G V+ T + DV ++D
Sbjct: 220 LVVQSSVLQATIWLPLLLFVMEFWRTGIEGTTTTTVKPRSKTMINKNEGGGGKDVEAVDV 399
Query: 187 KEPLQTEAEV 196
KE L E V
Sbjct: 400 KEELMLEESV 429
>AW596376 weakly similar to GP|10441744|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (16%)
Length = 416
Score = 124 bits (311), Expect = 1e-28
Identities = 62/111 (55%), Positives = 79/111 (70%)
Frame = +1
Query: 433 LILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLG 492
LIL+ V KLI NPNTY++ IGL W+ + FRW V MP +V +SI IL+ GLGMA FSLG
Sbjct: 82 LILMKVGNKLIINPNTYATFIGLIWASIHFRWGVDMPDVVNQSIEILASGGLGMATFSLG 261
Query: 493 LFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIV 543
LFMA RII CG + AM ++FL GPA+MA +S V+GLR +L +AI+
Sbjct: 262 LFMASSNRIIVCGPRMTLVAMGLKFLAGPAIMAVASIVIGLRDRMLKVAII 414
>BI974039 similar to GP|25956262|dbj PIN1-like auxin transport protein
{Cucumis sativus}, partial (7%)
Length = 421
Score = 102 bits (255), Expect = 4e-22
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = +1
Query: 492 GLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGI 551
GLFMALQPR+IACGN+ A+FAMAVRFLTGPAVMA +S VGL+GVLLH+AIVQAALPQGI
Sbjct: 241 GLFMALQPRVIACGNSTAAFAMAVRFLTGPAVMAAASVAVGLKGVLLHVAIVQAALPQGI 420
>BE191508 similar to GP|10441744|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (9%)
Length = 478
Score = 94.0 bits (232), Expect = 2e-19
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = -3
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSF 56
MIS D+YHV+TA VPLYV M LAY SVKWWK+FTP+QCSGIN+FVA F+VP+LSF
Sbjct: 173 MISLADVYHVVTATVPLYVTMFLAYISVKWWKLFTPEQCSGINKFVANFSVPILSF 6
>BU761996 similar to GP|28301753|gb| auxin efflux carrier protein PIN1 {Pisum
sativum}, partial (15%)
Length = 477
Score = 93.2 bits (230), Expect = 3e-19
Identities = 71/183 (38%), Positives = 90/183 (48%), Gaps = 11/183 (6%)
Frame = +2
Query: 268 NNGRNVSPRQSNFGSLGFDEESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGD 327
+N N PR ++ + G +G G G YPAP+ G+FSP A+K D
Sbjct: 17 SNNNNGKPRY-HYPAAGTG--TGTGTGTGTGTGHYPAPNP-GMFSPTASKNVAKK--PDD 178
Query: 328 GGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLN---------GVAHQKDYEEFG-- 376
KDLHMFVWSSS SPVS+ VF GG +Y + +L G ++ EE+
Sbjct: 179 PNKDLHMFVWSSSVSPVSD----VFGGGHEYDHKELKLTVSPGKVEGNINRDTQEEYQPE 346
Query: 377 HDEFSFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTNMPPASVMTRLILI 436
DEFSFGNR + + + EG + G P MPPASVMTRLILI
Sbjct: 347 KDEFSFGNRGIED--EHEGEKV------------------GNGNPKTMPPASVMTRLILI 466
Query: 437 MVW 439
MVW
Sbjct: 467 MVW 475
>TC231645 similar to UP|AEC1_ARATH (Q9C6B8) Auxin efflux carrier component 1
(PIN-FORMED protein) (AtPIN1), partial (7%)
Length = 761
Score = 67.0 bits (162), Expect = 2e-11
Identities = 30/42 (71%), Positives = 35/42 (82%)
Frame = -3
Query: 550 GIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 591
GIVPF+FA+EY +HPDI S V FGMLI+LPIT +YYI LGL
Sbjct: 708 GIVPFIFAREYGLHPDIWSNRVXFGMLISLPITFLYYIFLGL 583
>BI427388 homologue to GP|21435938|gb| PIN1-like auxin transport protein
{Populus tremula x Populus tremuloides}, partial (3%)
Length = 422
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/21 (85%), Positives = 20/21 (94%)
Frame = +2
Query: 571 VIFGMLIALPITLVYYILLGL 591
VIFGMLI+LPITL+YYI LGL
Sbjct: 224 VIFGMLISLPITLLYYIFLGL 286
>TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (49%)
Length = 1345
Score = 33.9 bits (76), Expect = 0.21
Identities = 30/124 (24%), Positives = 51/124 (40%), Gaps = 1/124 (0%)
Frame = +1
Query: 228 VSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHT-DFYSMVNNGRNVSPRQSNFGSLGFD 286
V + + ++ ++ L+SS TP S+ T + ++V R+ NF GFD
Sbjct: 76 VMVPAQTQGISISKTMQLESSIQ-TPGSSTLTETPSSIHAIPQNQSVFSRELNFSEYGFD 252
Query: 287 EESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASPVSE 346
++G N + P S I S +K+ +GG G+ + H F S +E
Sbjct: 253 PKTG-----NNQNHHSLKPESGEILSFGESKRTSYGGVNGNSNSNSHFFSGQSPFVAAAE 417
Query: 347 GGIH 350
H
Sbjct: 418 ERNH 429
>TC215890 similar to PIR|F96770|F96770 protein RNA-binding protein F1O17.10
[imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (17%)
Length = 913
Score = 32.7 bits (73), Expect = 0.46
Identities = 41/152 (26%), Positives = 57/152 (36%), Gaps = 2/152 (1%)
Frame = +2
Query: 269 NGRNVSPRQSNFGSLGFDEESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGA-GD 327
N N PR +G GF V GG+ Y + +S G+GGG G
Sbjct: 89 NYANERPR--GYGGGGFGSYGAVGGGGYEGGSSYRGGYGGDNYSRNDGSGYGYGGGRYGS 262
Query: 328 GGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLNGVAHQKDYEEFGHDEFSFGNRT- 386
GG + S S + G + GG ++ G A G+ T
Sbjct: 263 GGN------YGDSGSGNNYSGGYAGNAGGVGNHESSTGFASNGYDGSVVDGGVGAGSGTS 424
Query: 387 VANGVDKEGPVLSKLGSSSTTELHPKAGSQGE 418
A+G D G S+ GSS +L KA S+G+
Sbjct: 425 FADGYD--GSAGSEFGSSG--QLDSKASSKGD 508
>TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (4%)
Length = 1519
Score = 32.7 bits (73), Expect = 0.46
Identities = 42/186 (22%), Positives = 66/186 (34%), Gaps = 23/186 (12%)
Frame = +3
Query: 254 RGSSFNHTDFYSMVNNG------------------RNVSPRQSNFGSLGFDEESGVAKAN 295
RGS F H Y + G ++++PR S+FGS G +
Sbjct: 90 RGSHFGHPTAYDYQHRGPFPAHNQPYAPAPYGNYPQHMTPR-SSFGS-------GWEQRP 245
Query: 296 GNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFV----WSSSASPVSEGGIHV 351
+ G P PH+ G GHGG D + + + SPV G
Sbjct: 246 HHSFQG-PPPHNGGY-----EYYGGHGGHLSDAPPSTQLPSSAPPYGAGPSPVPSMGPTP 407
Query: 352 FRGGGDYGNDQLNGVAHQKDYEEFGHDEFSFGNRTVANGVDKEGPVLSKLGSS-STTELH 410
+ +YG Q HQ Y + G + +G + + P G ++ +
Sbjct: 408 AQVNYNYGQPQGQDYGHQTTYSQAGLPQQGYGQGYDESKYENRAPTQHSYGGHVNSQSTY 587
Query: 411 PKAGSQ 416
P+AG+Q
Sbjct: 588 PQAGAQ 605
>TC218891 homologue to UP|GAC1_YEAST (P28006) Protein phosphatase 1
regulatory subunit GAC1, partial (3%)
Length = 1463
Score = 32.0 bits (71), Expect = 0.79
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +3
Query: 303 PAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASPV 344
P P+S + P+ KG+GGG G GG WS A+ V
Sbjct: 273 PPPNSLALALPIQQPAKGNGGGGGGGGG--REDCWSEGATAV 392
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,593,931
Number of Sequences: 63676
Number of extensions: 392897
Number of successful extensions: 2499
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of query: 591
length of database: 12,639,632
effective HSP length: 103
effective length of query: 488
effective length of database: 6,081,004
effective search space: 2967529952
effective search space used: 2967529952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC135795.7