BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.5 + phase: 0
(471 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218461 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1... 407 e-136
TC211146 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1... 290 1e-78
BF595985 weakly similar to GP|22087278|gb| p44/SSL1-like protein... 80 2e-15
TC232638 weakly similar to UP|Q9XI43 (Q9XI43) F9L1.20 protein, p... 37 0.025
TC204165 weakly similar to GB|AAN28760.1|23505801|AY143821 At3g5... 35 0.072
TC223643 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting... 33 0.21
BM732647 33 0.36
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 32 0.61
TC219572 weakly similar to UP|RCCR_ARATH (Q8LDU4) Red chlorophyl... 30 1.8
AI443845 30 2.3
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 30 3.0
TC230491 homologue to UP|O81340 (O81340) 26S proteasome regulato... 29 4.0
TC225664 similar to UP|ACOC_CUCMA (P49608) Aconitate hydratase, ... 29 4.0
CA803108 29 4.0
TC217101 similar to UP|Q9FG04 (Q9FG04) Dbj|BAA86974.1 (AT5g06660... 29 5.2
TC221371 similar to UP|Q9LPQ2 (Q9LPQ2) F15H18.15, partial (11%) 29 5.2
CF921229 29 5.2
TC222248 weakly similar to GB|AAC51925.1|2708305|AF016369 U4/U6 ... 28 6.8
TC209608 homologue to UP|Q6ILS4 (Q6ILS4) HDC08496, partial (10%) 28 6.8
TC231570 homologue to UP|O82143 (O82143) OsS5a (26S proteasome r... 28 8.8
>TC218461 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1-like
protein), partial (57%)
Length = 1191
Score = 407 bits (1047), Expect(2) = e-136
Identities = 193/207 (93%), Positives = 200/207 (96%)
Frame = +2
Query: 166 DASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGL 225
DASLQNALELV LNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGL
Sbjct: 2 DASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGL 181
Query: 226 AAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAE 285
AAEMF+CKHLC+ETGGTYSVALDESHFKELILEH+PPPPAIAEY+TANLIKMGFPQR+AE
Sbjct: 182 AAEMFVCKHLCEETGGTYSVALDESHFKELILEHAPPPPAIAEYSTANLIKMGFPQRSAE 361
Query: 286 GSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPF 345
GSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIV F
Sbjct: 362 GSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMF 541
Query: 346 AEISPSSQNDPNHSFPNTCFGCQQSLL 372
E++PSSQ D NHSFPNTCFGCQQSLL
Sbjct: 542 DEVTPSSQKDSNHSFPNTCFGCQQSLL 622
Score = 97.8 bits (242), Expect(2) = e-136
Identities = 55/89 (61%), Positives = 60/89 (66%)
Frame = +3
Query: 374 LEQETRLNFPSLAQNANNNSALIVTCTFMRVYIIAQAVRASGILSQLLLPNDFQPYALDI 433
L +ET L+F AQN +NNSALIVT TFMR YI AQAV+ ILS LLPND Q A D+
Sbjct: 621 LVRETSLDFLLFAQNVSNNSALIVTSTFMRAYITAQAVKVPDILSL*LLPNDCQYSACDL 800
Query: 434 KLLSKWCSTLPPCYCDVASIYRTHEQVPV 462
K SKW STL P YC AS THE VPV
Sbjct: 801 KFPSKWRSTLSPSYCYTASTQWTHE*VPV 887
>TC211146 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1-like
protein), partial (33%)
Length = 558
Score = 290 bits (742), Expect = 1e-78
Identities = 143/169 (84%), Positives = 155/169 (91%)
Frame = +1
Query: 1 MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH 60
MNN+A +PLN D+EDDDED+ GLEAWER Y EDRSWE+LQEDESGLLRPIDTTAI+H
Sbjct: 58 MNNVAERPLNKDVEDDDEDDGG--GLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYH 231
Query: 61 AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE 120
AQYRRRLR LA+ AATARIQKGLIRYLYIVVDLSKAASERDFRPSRM V+ KQVE FIRE
Sbjct: 232 AQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMVVMGKQVEAFIRE 411
Query: 121 FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASL 169
FFDQNPLSHVGLVT KDG+A+C+T+LGGSPESHIKALMGKLECSGDASL
Sbjct: 412 FFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASL 558
>BF595985 weakly similar to GP|22087278|gb| p44/SSL1-like protein
{Arabidopsis thaliana}, partial (11%)
Length = 292
Score = 80.5 bits (197), Expect = 2e-15
Identities = 40/88 (45%), Positives = 54/88 (60%)
Frame = +2
Query: 264 PAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCG 323
P+++ Y++A + FP +A GS++ C C + T GY+ P C V VC LPT C +C
Sbjct: 23 PSVSAYSSACFFQFSFPHLSAWGSLSFCACLYVSLTSRGYSSPTCCVLVCALPTACLLCC 202
Query: 324 LTLISSPHLARSYHHLFPIVPFAEISPS 351
TLISSP LARSY LF + F +SPS
Sbjct: 203 STLISSPLLARSYPPLFSFMFFDVVSPS 286
>TC232638 weakly similar to UP|Q9XI43 (Q9XI43) F9L1.20 protein, partial (30%)
Length = 470
Score = 36.6 bits (83), Expect = 0.025
Identities = 27/89 (30%), Positives = 35/89 (38%), Gaps = 7/89 (7%)
Frame = -2
Query: 304 TCPRC-------KVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDP 356
TCPRC V +P +C LAR+ HH +P P P P
Sbjct: 364 TCPRCLNKQDF*DVNSSGVPLQC------------LARAQHHPYPSSPIPSSFP-----P 236
Query: 357 NHSFPNTCFGCQQSLLVLEQETRLNFPSL 385
NH P++CF S+ + L F SL
Sbjct: 235 NHELPHSCFLNYSSIPSFPFHSSLCFSSL 149
>TC204165 weakly similar to GB|AAN28760.1|23505801|AY143821
At3g51730/T18N14_110 {Arabidopsis thaliana;} , partial
(28%)
Length = 801
Score = 35.0 bits (79), Expect = 0.072
Identities = 24/93 (25%), Positives = 45/93 (47%), Gaps = 7/93 (7%)
Frame = +3
Query: 173 LELVHSNLNQIPSYGHREVLIL-------YSALSTCDPGDLMETIQKCKKSKIRCSVIGL 225
+ ++H+ +Q+PS+ + V ++ +S ++T PG+ + C+K + I L
Sbjct: 231 INILHNTCHQLPSFKQKCVALVDYYAPLFFSEVATIQPGEFCHKVNLCQK----IAYIAL 398
Query: 226 AAEMFICKHLCQETGGTYSVALDESHFKELILE 258
+ C+ CQ+T T L ES K I+E
Sbjct: 399 KVQDDSCE-FCQDTVSTLLEKLKESDTKLEIIE 494
>TC223643 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting
protein-like, partial (27%)
Length = 737
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/83 (33%), Positives = 37/83 (43%), Gaps = 5/83 (6%)
Frame = -3
Query: 290 ICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLAR-SYHHLF--PIVPFA 346
I TCHE T GG CPR + C T SSP R + HL P P +
Sbjct: 654 IITCHERGATAGG-ACPRVLLAHANHKPAF*TCNRT--SSPERVRPARAHLLGGPSCPSS 484
Query: 347 EISPSSQND--PNHSFPNTCFGC 367
+ SS+N P H+ ++C+ C
Sbjct: 483 QSLVSSKNTRVPAHAPASSCYPC 415
>BM732647
Length = 432
Score = 32.7 bits (73), Expect = 0.36
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 291 CTCHEEAKTGGGYTCPRCKVRVCELPTECRVCG---LTLISSPHLARSYHHLFPIVPF 345
C CH++ GY C C CE +C CG ++L HL+ +H L ++ F
Sbjct: 36 CFCHKQT-IDMGYVCSVCLSIFCEHHDKCSTCG*VFISLTYCGHLSFYFHKLLHMLCF 206
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 32.0 bits (71), Expect = 0.61
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 6 GKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRP 52
G + D EDDD+D+ D+ E + ED E +EDE L P
Sbjct: 430 GDDQDDDDEDDDDDDEEDEAGEEEDEDGAEDEENEEDEEDEEALQPP 290
>TC219572 weakly similar to UP|RCCR_ARATH (Q8LDU4) Red chlorophyll catabolite
reductase, chloroplast precursor (RCC reductase)
(AtRCCR) (Accelerated cell death protein 2) , partial
(13%)
Length = 485
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -3
Query: 12 DLEDDDEDEAN------DDGLEAWERAYTEDRSWES 41
D +DDDEDE +DG E W+R E+ ES
Sbjct: 165 DTDDDDEDEEEGLILKEEDGTERWQRGEGEEDKMES 58
>AI443845
Length = 298
Score = 30.0 bits (66), Expect = 2.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 293 CHEEAKTGGGYTCPRCKVRVCEL 315
CH K YTCPRC R C L
Sbjct: 142 CHVCQKQFSQYTCPRCNSRYCSL 210
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 10 NGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDE 46
+GD +DDDED+ +DD E E ED +E+E
Sbjct: 400 DGDDQDDDEDDDDDDDDEEDEGGEEEDEDGAEDEENE 290
Score = 28.9 bits (63), Expect = 5.2
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = -1
Query: 12 DLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRP 52
D +DDD+DE ++ G E E ++ + E +++E L+P
Sbjct: 373 DDDDDDDDEEDEGGEEEDEDGAEDEENEEDEEDEEEEALQP 251
>TC230491 homologue to UP|O81340 (O81340) 26S proteasome regulatory subunit
S5A, partial (30%)
Length = 437
Score = 29.3 bits (64), Expect = 4.0
Identities = 29/112 (25%), Positives = 49/112 (42%), Gaps = 4/112 (3%)
Frame = +3
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVT-TKDGVANCLT--- 144
I +D S+ D+ PSR A V L NP + VG++T GV +T
Sbjct: 87 ICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTS 266
Query: 145 DLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYS 196
DLG I A M L+ G+ +L +++ L + ++ +I+++
Sbjct: 267 DLG-----KILACMHGLDIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFA 407
>TC225664 similar to UP|ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic
(Citrate hydro-lyase) (Aconitase) , partial (65%)
Length = 2064
Score = 29.3 bits (64), Expect = 4.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 437 SKWCSTLPPCYCDVASIYRTHEQVPVHEMELT 468
++WC L PC ++ +++TH+ P E EL+
Sbjct: 1384 AQWCPALQPC---ISGLHQTHKASPQSECELS 1298
>CA803108
Length = 456
Score = 29.3 bits (64), Expect = 4.0
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Frame = -2
Query: 304 TCPRCK-------VRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDP 356
TCPRC V E+ +C LAR+ HH +P P PSS
Sbjct: 311 TCPRCLNKQDF*GVNSSEVLLQC------------LARAQHHPYPSSPI----PSSFAS- 183
Query: 357 NHSFPNTCFGCQQSLLVLEQETRLNFPSLA 386
NH P CF S+ + L F SL+
Sbjct: 182 NHELPR*CFLNYSSIPSFPIHSSLCFSSLS 93
>TC217101 similar to UP|Q9FG04 (Q9FG04) Dbj|BAA86974.1 (AT5g06660/F15M7_19),
partial (88%)
Length = 1876
Score = 28.9 bits (63), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -2
Query: 153 HIKALMGKLECSGDASLQNALELVHSNLNQI 183
HI A+ G+ +A +NA L+HSNL +
Sbjct: 1689 HISAIEGEKMAESEAKQENATHLMHSNLTDL 1597
>TC221371 similar to UP|Q9LPQ2 (Q9LPQ2) F15H18.15, partial (11%)
Length = 893
Score = 28.9 bits (63), Expect = 5.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 289 AICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCG 323
A C CH++ GY C C CE +C CG
Sbjct: 346 ASCFCHKQT-IDMGYVCSVCLSIFCEHHDKCSTCG 447
>CF921229
Length = 680
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 11 GDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESG 48
G LE D + A + G+ W R + RSW+ L+E+ SG
Sbjct: 199 GGLEHDKKHGAMEKGI--WNRGSSGGRSWK*LREEGSG 92
>TC222248 weakly similar to GB|AAC51925.1|2708305|AF016369 U4/U6 small
nuclear ribonucleoprotein hPrp4 {Homo sapiens;} ,
partial (7%)
Length = 747
Score = 28.5 bits (62), Expect = 6.8
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +3
Query: 8 PLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRL 67
P NG++ D D NDD A E +ES L+R A+ +RR
Sbjct: 360 PQNGEVGSSDSDSDNDD-----SNARINQGGGEYEISEESRLVRERQEKAMQELMMKRRA 524
Query: 68 RALA 71
ALA
Sbjct: 525 AALA 536
>TC209608 homologue to UP|Q6ILS4 (Q6ILS4) HDC08496, partial (10%)
Length = 808
Score = 28.5 bits (62), Expect = 6.8
Identities = 19/60 (31%), Positives = 27/60 (44%)
Frame = -2
Query: 309 KVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQ 368
+VR CE PTE R G P + ++ HH VP +P FP++ GC+
Sbjct: 525 RVRTCEGPTEARS*G-AHSHDPRVGQAQHHPHVRVP----NPQHHLLRRWDFPDSDLGCE 361
>TC231570 homologue to UP|O82143 (O82143) OsS5a (26S proteasome regulatory
particle non-ATPase subunit10), partial (21%)
Length = 422
Score = 28.1 bits (61), Expect = 8.8
Identities = 28/88 (31%), Positives = 39/88 (43%), Gaps = 4/88 (4%)
Frame = +3
Query: 92 DLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVT-TKDGVANCLT---DLG 147
D S+ D+ PSR A V L NP + VG++T GV +T DLG
Sbjct: 165 DNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLG 344
Query: 148 GSPESHIKALMGKLECSGDASLQNALEL 175
I A M LE SG+ +L +++
Sbjct: 345 -----KILACMHGLEISGEMNLAAGIQV 413
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,693,710
Number of Sequences: 63676
Number of extensions: 413529
Number of successful extensions: 2657
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of query: 471
length of database: 12,639,632
effective HSP length: 101
effective length of query: 370
effective length of database: 6,208,356
effective search space: 2297091720
effective search space used: 2297091720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135795.5