BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.1 - phase: 0
(150 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216006 128 1e-30
TC225471 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, ... 124 2e-29
TC216005 weakly similar to UP|Q8W156 (Q8W156) Deoxycytidine deam... 118 1e-27
TC225469 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, ... 114 2e-26
TC225470 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, ... 100 2e-22
BQ453178 82 1e-16
BI498259 similar to GP|14532498|gb| AT5g28050/F15F15_120 {Arabid... 77 4e-15
TC216007 similar to UP|Q94BU8 (Q94BU8) AT5g28050/F15F15_120, par... 75 9e-15
TC225472 similar to UP|Q94BU8 (Q94BU8) AT5g28050/F15F15_120, par... 67 3e-12
TC228764 similar to GB|AAR23701.1|38564244|BT010731 At1g68720 {A... 51 2e-07
BF067905 38 0.002
TC216008 36 0.008
TC207785 similar to UP|Q6IDB6 (Q6IDB6) At1g48175, partial (82%) 33 0.039
BI674298 31 0.25
AI988101 30 0.43
TC225473 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, ... 30 0.56
TC228992 weakly similar to GB|CAA45371.1|3714|SCGAC1 GAC1 {Sacch... 29 0.96
TC229450 weakly similar to UP|Q8LJU6 (Q8LJU6) Invertase inhibito... 28 1.6
TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding f... 27 3.6
BU548534 similar to PIR|B85068|B85 UV-damaged DNA binding factor... 27 3.6
>TC216006
Length = 854
Score = 128 bits (321), Expect = 1e-30
Identities = 71/147 (48%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M LRN +PTAHAE+ AIREAC+KL+++ LA CE+Y SCEPCPMCFGAIH S++K
Sbjct: 371 MVLRNTDPTAHAEVTAIREACQKLNQIELADCEIYASCEPCPMCFGAIHLSRIK------ 532
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFH- 116
R+VYGA AEAA +IGF ++I +GT F+
Sbjct: 533 -----------------------------RLVYGAKAEAAIAIGFDDFIADALRGTGFYQ 625
Query: 117 --KFEIKKIDGIAAEIAEEVFEKTKDK 141
+ EIKK DG A IAE+VFEKTK K
Sbjct: 626 KAQLEIKKADGSGAVIAEQVFEKTKSK 706
>TC225471 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(96%)
Length = 1199
Score = 124 bits (311), Expect = 2e-29
Identities = 68/149 (45%), Positives = 89/149 (59%), Gaps = 6/149 (4%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M LRN +PTAHAE+ IR+AC+KL+++ L+ CE+Y SCEPCPMCFGAIH S+VK
Sbjct: 398 MVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVK------ 559
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFH- 116
R+VYGA AEAA +IGF ++I +GT F+
Sbjct: 560 -----------------------------RLVYGAKAEAAIAIGFDDFISDALRGTGFYQ 652
Query: 117 --KFEIKKIDGIAAEIAEEVFEKTKDKVK 143
+ EIK+ DG A IAEEVFE+TK+K +
Sbjct: 653 KAQLEIKRADGKEANIAEEVFERTKEKFR 739
>TC216005 weakly similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase,
partial (82%)
Length = 770
Score = 118 bits (295), Expect = 1e-27
Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Frame = +1
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M +RN +PTAHAEI AIREAC+KL++V LA E+Y SCEPCPMC AIHFSK+K
Sbjct: 229 MVVRNADPTAHAEITAIREACRKLNQVELADSEIYASCEPCPMCLSAIHFSKIK------ 390
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFHK 117
++VYGA AEAA +IGF + I K T F++
Sbjct: 391 -----------------------------KLVYGAKAEAAVAIGFESIIADALKDTGFYE 483
Query: 118 ---FEIKKIDGIAAEIAEEVFEKTKDK 141
E+KK +G A +AE+VFEKTKDK
Sbjct: 484 KLNLEVKKAEGSVAVMAEQVFEKTKDK 564
>TC225469 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(96%)
Length = 794
Score = 114 bits (285), Expect = 2e-26
Identities = 66/147 (44%), Positives = 83/147 (55%), Gaps = 6/147 (4%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M L N +PTAHAE+ AIREACKKL ++ LA CE+Y SCEPCPMCFGAIH S++K
Sbjct: 290 MVLCNTDPTAHAEVTAIREACKKLKQIELADCEIYASCEPCPMCFGAIHLSRIK------ 451
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFHK 117
R+VYGA AEAA +IGF ++I +GT F++
Sbjct: 452 -----------------------------RLVYGAKAEAAIAIGFDDFIADALRGTGFYQ 544
Query: 118 ---FEIKKIDGIAAEIAEEVFEKTKDK 141
EIK+ DG IA + FEKT +K
Sbjct: 545 KATLEIKRADGNXGIIA*KGFEKTXEK 625
>TC225470 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(52%)
Length = 1014
Score = 100 bits (250), Expect = 2e-22
Identities = 57/133 (42%), Positives = 76/133 (56%), Gaps = 6/133 (4%)
Frame = +2
Query: 17 IREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSVLNY 76
I +AC+KL+++ L+ CE+Y SCEPCPMCFGAIH S+VK
Sbjct: 494 ILQACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVK---------------------- 607
Query: 77 IDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFH---KFEIKKIDGIAAEI 130
R+VYGA AEAA +IGF ++I +GT F+ + EIK+ DG A I
Sbjct: 608 -------------RLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADGKEANI 748
Query: 131 AEEVFEKTKDKVK 143
AEEVFE+TK+K +
Sbjct: 749 AEEVFERTKEKFR 787
>BQ453178
Length = 426
Score = 82.0 bits (201), Expect = 1e-16
Identities = 47/118 (39%), Positives = 62/118 (51%), Gaps = 6/118 (5%)
Frame = +3
Query: 14 IIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSV 73
I IR C+KL+++ L+ CE+Y SCEPCPMCFGAIH S+VK
Sbjct: 174 IAVIRNVCEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVK------------------- 296
Query: 74 LNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFH---KFEIKKIDG 125
R+VYGA AEAA +IGF ++I +GT F+ + EIK+ DG
Sbjct: 297 ----------------RLVYGAKAEAAIAIGFDDFISDALRGTGFYQKAQLEIKRADG 422
>BI498259 similar to GP|14532498|gb| AT5g28050/F15F15_120 {Arabidopsis
thaliana}, partial (52%)
Length = 383
Score = 76.6 bits (187), Expect = 4e-15
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +1
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFG 46
M LRN +PTAHAE+ IR+AC+KL+++ L+ CE+Y SCEPCPMCFG
Sbjct: 244 MVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMCFG 381
>TC216007 similar to UP|Q94BU8 (Q94BU8) AT5g28050/F15F15_120, partial (52%)
Length = 1031
Score = 75.5 bits (184), Expect = 9e-15
Identities = 33/48 (68%), Positives = 39/48 (80%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAI 48
M +RN +PTAHAEI AIREAC+KL++V LA E+Y SCEPCPMC AI
Sbjct: 887 MVVRNADPTAHAEITAIREACRKLNQVELADSEIYASCEPCPMCLSAI 1030
>TC225472 similar to UP|Q94BU8 (Q94BU8) AT5g28050/F15F15_120, partial (63%)
Length = 866
Score = 67.0 bits (162), Expect = 3e-12
Identities = 26/36 (72%), Positives = 31/36 (85%)
Frame = +3
Query: 19 EACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVK 54
+ACKKL K+ LA CE+Y SCEPCPMCFGAIH S++K
Sbjct: 339 KACKKLKKIELADCEIYASCEPCPMCFGAIHLSRIK 446
Score = 33.9 bits (76), Expect = 0.030
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Frame = +1
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M L N +PTAHA + AIRE K + G L +K+ S+RR
Sbjct: 241 MVLCNTDPTAHAAVTAIRE------KFAHDGHAL------------PRWIAKLVRSLRR* 366
Query: 61 SFCLHNYTFLQSVL--NYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDF 115
+ + Y L S++ + T+L ++Q+++ +GF ++I +GT F
Sbjct: 367 NLQIAKYMLLVSLVPCALVQSTFLELRGLRQQLL----------LGFDDFIADALQGTGF 516
Query: 116 HK---FEIKKIDGIA 127
++ EIK+ DGI+
Sbjct: 517 YQKVTLEIKRADGIS 561
>TC228764 similar to GB|AAR23701.1|38564244|BT010731 At1g68720 {Arabidopsis
thaliana;} , partial (16%)
Length = 1391
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +2
Query: 6 KEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKV 53
++ TAHAE+I IREA K L L+ LY + EPCPMC GAI ++V
Sbjct: 713 RDSTAHAEMICIREASKLLRSWRLSDTTLYVTLEPCPMCAGAILQARV 856
>BF067905
Length = 384
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/34 (58%), Positives = 25/34 (72%), Gaps = 3/34 (8%)
Frame = -1
Query: 111 KGTDFHK---FEIKKIDGIAAEIAEEVFEKTKDK 141
+GT F++ EIK+ DG A IAEEVFEKTK+K
Sbjct: 372 RGTGFYQKATLEIKRADGNEAIIAEEVFEKTKEK 271
>TC216008
Length = 560
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 3/34 (8%)
Frame = +3
Query: 111 KGTDFHK---FEIKKIDGIAAEIAEEVFEKTKDK 141
K T F++ E+KK +G A +AE+VFEKTKDK
Sbjct: 360 KDTGFYEKLNLEVKKAEGSVAVMAEQVFEKTKDK 461
>TC207785 similar to UP|Q6IDB6 (Q6IDB6) At1g48175, partial (82%)
Length = 1089
Score = 33.5 bits (75), Expect = 0.039
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +2
Query: 4 RNKEPTAHAEIIAIREACKKLDKVSLA---------GCELYTSCEPCPMCFGAIHFSKVK 54
+ + T HAE+ A+ + K L+ C LY +CEPC MC A+ +K
Sbjct: 314 QTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIK 493
>BI674298
Length = 419
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 42 PMCFGAIHFSKVKA--SMRRLSFCLHNYTFL 70
PMCFGAIH S+VK ++ L F ++ Y L
Sbjct: 3 PMCFGAIHLSRVKVGNALLFLRFSIYLYLLL 95
>AI988101
Length = 232
Score = 30.0 bits (66), Expect = 0.43
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVY 93
SF H Y L + L+YI I YLS +H ++ Y
Sbjct: 107 SFSHHMYDELNTQLSYITIYYLSILHYSDKLNY 205
>TC225473 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(34%)
Length = 1033
Score = 29.6 bits (65), Expect = 0.56
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 1 MFLRNKEPTAHAEIIAIRE 19
M LRN +PTAHAE+ IR+
Sbjct: 478 MVLRNTDPTAHAEVTVIRK 534
>TC228992 weakly similar to GB|CAA45371.1|3714|SCGAC1 GAC1 {Saccharomyces
cerevisiae;} , partial (4%)
Length = 1209
Score = 28.9 bits (63), Expect = 0.96
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 45 FGAIHFSKVKASMRRLSFCLHNYTFLQSVLNYI 77
F A+HF++ +M + NY F+QS+ YI
Sbjct: 1084 FSALHFTRTS*NMSSICANCSNYLFMQSICMYI 986
>TC229450 weakly similar to UP|Q8LJU6 (Q8LJU6) Invertase inhibitor-like
protein, partial (24%)
Length = 656
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 35 YTSCEPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSVLNYIDITYL 82
+ C+PC +CFGA + + CL L S N I I +L
Sbjct: 288 HNKCQPCHICFGAARVGGEVLDAKVVMGCL-----LASFFNQIGIVFL 160
>TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding factor 2,
partial (54%)
Length = 1493
Score = 26.9 bits (58), Expect = 3.6
Identities = 11/36 (30%), Positives = 16/36 (43%)
Frame = -3
Query: 15 IAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHF 50
+ + C L SL C + SC C + A+HF
Sbjct: 1032 LCLPSCCLSLCNCSLCLCNCFCSCSSCLLSCQALHF 925
>BU548534 similar to PIR|B85068|B85 UV-damaged DNA binding factor-like
protein [imported] - Arabidopsis thaliana, partial (7%)
Length = 586
Score = 26.9 bits (58), Expect = 3.6
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Frame = -3
Query: 58 RRLSFCLHNYT-FLQSVLNYIDITYLSYIHI 87
R+ CL N FL S+L ++ +TY S +HI
Sbjct: 122 RK*LMCLFNSAAFLDSILVFVSLTYYSCLHI 30
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,614,456
Number of Sequences: 63676
Number of extensions: 92072
Number of successful extensions: 697
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of query: 150
length of database: 12,639,632
effective HSP length: 89
effective length of query: 61
effective length of database: 6,972,468
effective search space: 425320548
effective search space used: 425320548
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135565.1