BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135505.7 - phase: 0 /pseudo
(109 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224152 similar to UP|Q8L8N8 (Q8L8N8) 70kD heat shock protein, ... 87 1e-18
TC219546 UP|HS70_SOYBN (P26413) Heat shock 70 kDa protein, complete 33 0.027
TC232798 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A... 30 0.23
TC228123 similar to UP|Q9LW21 (Q9LW21) Arabidopsis thaliana geno... 28 0.67
TC234234 similar to UP|Q944L8 (Q944L8) At1g11930/F12F1_20, parti... 27 1.9
TC209100 similar to UP|Q944L8 (Q944L8) At1g11930/F12F1_20, parti... 27 1.9
BF008663 weakly similar to GP|16226282|gb At1g11930/F12F1_20 {Ar... 26 2.5
AW704803 weakly similar to GP|19880576|gb| CcmF {Legionella pneu... 26 3.3
TC220546 weakly similar to UP|Q9SNC6 (Q9SNC6) Arm repeat contain... 25 4.3
TC219261 similar to GB|AAN33191.1|23463043|BT000816 At2g31260/F1... 25 7.4
BU083937 24 9.6
TC205991 similar to GB|AAT06461.1|46931314|BT012642 At2g20840 {A... 24 9.6
>TC224152 similar to UP|Q8L8N8 (Q8L8N8) 70kD heat shock protein, partial
(33%)
Length = 563
Score = 87.0 bits (214), Expect = 1e-18
Identities = 48/87 (55%), Positives = 60/87 (68%)
Frame = +1
Query: 1 MHTLDIKVRPFIAAIANKACRSTTAVELLGKFLVKLKFSVEIRVKIPIRKVVFTVPVSFT 60
+ TLDI VRPFIAA+ N RSTT E+L FLV+L+ E ++K IR VV TVPVSF+
Sbjct: 301 VQTLDIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRAMAEAQLKRRIRNVVLTVPVSFS 480
Query: 61 RLRRTQIERASAWADLDDVELMPQPIA 87
R + T+IERA A A L + LMP+P A
Sbjct: 481 RFQLTRIERACAMAGLHVLRLMPEPTA 561
>TC219546 UP|HS70_SOYBN (P26413) Heat shock 70 kDa protein, complete
Length = 2099
Score = 32.7 bits (73), Expect = 0.027
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +1
Query: 9 RPFIAAIANKACRSTTAVELLGKFLVKLKFSVEIRVKIPIRKVVFTVPVSFTRLRRTQIE 68
+P I + +A E+ LVK++ E + ++ V TVP F +R +
Sbjct: 307 KPMIVVNYKGEEKKFSAEEISSMVLVKMREVAEAFLGHAVKNAVVTVPAYFNDSQRQATK 486
Query: 69 RASAWADLDDVELMPQPIAVALFY 92
A A + L+ + ++ +P A A+ Y
Sbjct: 487 DAGAISGLNVLRIINEPTAAAIAY 558
>TC232798 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;} , partial (10%)
Length = 707
Score = 29.6 bits (65), Expect = 0.23
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = -3
Query: 11 FIAAIANKACRSTTAVELLGKFL-VKLKFSVEIRVKIPIRKVVFTVPVSFTRLRRTQIER 69
F I ACR ELLG FL V + V I V PIR SF LR Q+ +
Sbjct: 648 FFRPITRCACRKIRWRELLGHFLNVVITGRVIILVLPPIR--------SFLVLRNLQLMQ 493
Query: 70 AS---AWADLDDVELMPQPI 86
+ AW V++ P+P+
Sbjct: 492 LALNRAWIRNRRVKIQPRPV 433
>TC228123 similar to UP|Q9LW21 (Q9LW21) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MDJ14, partial (9%)
Length = 831
Score = 28.1 bits (61), Expect = 0.67
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 34 VKLKFSVEIRVKIPIRKVVFTVPVSFTRLRRT 65
VKL+FSV+++V R++VF V ++ +R T
Sbjct: 527 VKLEFSVDVKVSWIFREMVFHVQLALIGIRMT 432
>TC234234 similar to UP|Q944L8 (Q944L8) At1g11930/F12F1_20, partial (42%)
Length = 445
Score = 26.6 bits (57), Expect = 1.9
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 11/45 (24%)
Frame = +3
Query: 7 KVRPFIAAIANKACRSTT-----------AVELLGKFLVKLKFSV 40
KV+P IAA+ N AC T AVE +G+ +K+ F V
Sbjct: 225 KVKPLIAAVPNLACVQTVDDEKIANLLDRAVENVGRKSLKVFFQV 359
>TC209100 similar to UP|Q944L8 (Q944L8) At1g11930/F12F1_20, partial (49%)
Length = 403
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +2
Query: 7 KVRPFIAAIANKACRSTTAVELLGKFL 33
KV+P IAA+ N AC T + + FL
Sbjct: 236 KVKPLIAAVPNLACVETVDDKKIANFL 316
>BF008663 weakly similar to GP|16226282|gb At1g11930/F12F1_20 {Arabidopsis
thaliana}, partial (57%)
Length = 577
Score = 26.2 bits (56), Expect = 2.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 6 IKVRPFIAAIANKACRSTTAVELLGKFLVKLKFSVEIRVKIPIRKVV 52
IKV+P IAA+ AC T + + FL + +V K P++ +V
Sbjct: 233 IKVKPLIAAVPYLACVETEDDKKIANFLDRAVANVS---KKPVKSLV 364
>AW704803 weakly similar to GP|19880576|gb| CcmF {Legionella pneumophila},
partial (5%)
Length = 277
Score = 25.8 bits (55), Expect = 3.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 29 LGKFLVKLKFSVEIRVKIPIRKVVFTVPVSFTRLRRTQIERASAWADLDDVELMPQPIAV 88
LGK V + + + + ++ +P TRLR + E + W L V L+ P AV
Sbjct: 7 LGKLSVGAPYFDAVMAPLLLPALLLMIPA--TRLRWGRDEGPALWRRLRPVVLVMGPAAV 180
Query: 89 AL 90
AL
Sbjct: 181AL 186
>TC220546 weakly similar to UP|Q9SNC6 (Q9SNC6) Arm repeat containing protein
homolog, partial (6%)
Length = 525
Score = 25.4 bits (54), Expect = 4.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 23 TTAVELLGKFLVKLKFSVEIRVKIPIRK 50
T AVEL+G+ V +K VEI++ + RK
Sbjct: 353 TCAVELVGRVKVAVKHIVEIQIFVIRRK 436
>TC219261 similar to GB|AAN33191.1|23463043|BT000816 At2g31260/F16D14.10
{Arabidopsis thaliana;} , partial (6%)
Length = 1206
Score = 24.6 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 46 IPIRKVVFTVPVSFTRLRRTQI 67
+PI+K+ V VSF + +RTQ+
Sbjct: 404 VPIKKIRMIVLVSFNQPQRTQV 339
>BU083937
Length = 421
Score = 24.3 bits (51), Expect = 9.6
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = -2
Query: 1 MHTLDIKVRPFIAAIANKACRSTTAVELLGKFLVKLKFSVE 41
+ +D+ F AIA++ RS+ V LG+F + VE
Sbjct: 165 VQAVDVVEAVFYGAIAHRTLRSSVRVIGLGQFSCNAEMCVE 43
>TC205991 similar to GB|AAT06461.1|46931314|BT012642 At2g20840 {Arabidopsis
thaliana;} , partial (93%)
Length = 1199
Score = 24.3 bits (51), Expect = 9.6
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = -2
Query: 62 LRRTQIERASAWADLDDVELMPQPIAVALFYAQQQLQTSASSLED 106
LRR +R+ +W D ++ A+ + ++ L+++ASSL D
Sbjct: 145 LRRRDWDRSDSWNQSDREKMDVIVAAMCV*LREKALESTASSLPD 11
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,543,220
Number of Sequences: 63676
Number of extensions: 33063
Number of successful extensions: 181
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of query: 109
length of database: 12,639,632
effective HSP length: 85
effective length of query: 24
effective length of database: 7,227,172
effective search space: 173452128
effective search space used: 173452128
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC135505.7