BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.5 - phase: 0 /pseudo
(1283 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922226 187 3e-47
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 155 1e-37
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 152 7e-37
TC213365 similar to UP|Q6I8L6 (Q6I8L6) Reverse transcriptase (Fr... 97 3e-20
BI784757 96 8e-20
CO981347 94 4e-19
AW760164 similar to GP|11994422|dbj oxidoreductase short-chain ... 93 9e-19
TC204791 weakly similar to UP|O82196 (O82196) Copia-like retroel... 87 5e-17
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 86 1e-16
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 79 1e-14
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 75 1e-13
BU545438 75 1e-13
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 75 2e-13
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 72 2e-12
CD394944 71 3e-12
BI701169 71 4e-12
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 68 3e-11
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 67 7e-11
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 58 1e-10
TC232910 similar to UP|Q6I8N0 (Q6I8N0) Pol polypeptide, partial ... 65 3e-10
>CF922226
Length = 667
Score = 187 bits (474), Expect = 3e-47
Identities = 96/218 (44%), Positives = 141/218 (64%), Gaps = 5/218 (2%)
Frame = -3
Query: 93 MTKSLAHRQCLKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCAL 152
MTKSL +R KQ LY ++M E + + EQL FNK+I DL NIDV ++DED+AL LLC L
Sbjct: 665 MTKSLVNRLYXKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYL 486
Query: 153 PRSFENFKDTMLYGKEGTITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGK 212
P+S+ +FK+T+L+G++ +++L+EVQ L +KEL + K+ K SGEGL + +
Sbjct: 485 PKSYSHFKETLLFGRD-SVSLDEVQTALNSKELNERKEKKSSASGEGLTARGKTFKKDSE 309
Query: 213 GKGKNSKSKSRSKGDGNKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLAS-----KD 267
K K +++ G+GN K +C+ C GH +K CPER+ NGG N + + +D
Sbjct: 308 FDKKKQKPENQKNGEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNNRKKDSGNAAIVQD 129
Query: 268 EGCESAGALTVTSWEPEKGWVLDSGCSYHISPRKGYFE 305
+G ESA AL V+ PE W++DSGCS+H++P K +FE
Sbjct: 128 DGYESAEALMVSEKNPETKWIMDSGCSWHMTPNKSWFE 15
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 155 bits (391), Expect = 1e-37
Identities = 126/477 (26%), Positives = 211/477 (43%), Gaps = 16/477 (3%)
Frame = +1
Query: 113 MESKPIMEQLTEFNKIIDDL-ANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTI 171
++S+ I++Q + K+I DL A + + E+ + + L EN ++ +G+
Sbjct: 1135 IKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSD 1314
Query: 172 TLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSKSRSKG----D 227
TL+EV L+ K + L + G + + S+ +SR G
Sbjct: 1315 TLDEV--LLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKK 1488
Query: 228 GNKTKYKCFICHNPGHFKKDC------PERKDNGGGNPSVQLASKDEGCESAGALTVTSW 281
+ K++C C GH K C P + + S T
Sbjct: 1489 SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRA 1668
Query: 282 EPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDF 341
++ W LDSGCS H++ K + +E V G+ KI G+G K+ D
Sbjct: 1669 SAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMG----KLVHDGLP 1836
Query: 342 LLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHG-ALVIAKGSKIHGLYILEGS 400
L V + L NLISIS G+ + +++ + V+ KGS+ L
Sbjct: 1837 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 2016
Query: 401 TIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGL---LGNEKLNKLDFCDNCTL 457
+++S D ++WH R GH+ RG+ ++ +G + N K+ + C C +
Sbjct: 2017 QETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQI 2196
Query: 458 GKQHKVKFGVGVHKS-SRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDDYSRRVWVYILKN 516
GKQ K+ H++ SR E +H DL+GP V++ GG Y ++DD+SR WV ++
Sbjct: 2197 GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 2376
Query: 517 KSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
KS+ FE FKE + ++ + +K +R+D+G+EF +F EFC +GI A T
Sbjct: 2377 KSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAIT 2547
Score = 85.5 bits (210), Expect = 1e-16
Identities = 37/94 (39%), Positives = 65/94 (68%)
Frame = +1
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
YI +S + +W+K M+ E + Q + ++CD+ SAI+++ + + H RTKHI+IR H++
Sbjct: 4405 YIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYI 4584
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFK 1274
RD+++ K I ++ V +EE ADIFTK+L ++F+
Sbjct: 4585 RDLVDDKVITLKHVDTEEQIADIFTKALDANQFE 4686
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 152 bits (385), Expect = 7e-37
Identities = 127/480 (26%), Positives = 209/480 (43%), Gaps = 19/480 (3%)
Frame = +1
Query: 113 MESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCA----LPRSFENFKDTMLYGKE 168
++S+ I++Q + K+I AN++ E ++ + L L EN ++ +
Sbjct: 1138 IKSEKILQQEAQLKKVI---ANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNK 1308
Query: 169 GTITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSKSRSKGDG 228
G+ L+EV + K + + L + G + S+ +SR G
Sbjct: 1309 GSDMLDEVLQ--LGKNVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATMSQHRSRHHGTQ 1482
Query: 229 NKT----KYKCFICHNPGHFKKDC------PERKDNGGGNPSVQLASKDEGCESAGALTV 278
K K++C C GH K C P + + S T
Sbjct: 1483 QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHTS 1662
Query: 279 TSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDD 338
++ W LDSGCS H++ K + +E V G+ KI G+G K+ D
Sbjct: 1663 LRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMG----KLVHD 1830
Query: 339 RDFLLKDVRYIPELRRNLISISMFDGLGYCTRIERGVMRISHG-ALVIAKGSKIHGLYIL 397
L V + L NLISIS G+ + +++ + V+ KGS+ L
Sbjct: 1831 GLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYL 2010
Query: 398 EGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGL---LGNEKLNKLDFCDN 454
+++S D K+WH R GH+ RG+ ++ +G + N K+ + C
Sbjct: 2011 WTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGE 2190
Query: 455 CTLGKQHKVKFGVGVHKS-SRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDDYSRRVWVYI 513
C +GKQ K+ H++ SR E +H DL+GP V++ GG Y ++DD+SR WV
Sbjct: 2191 CQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNF 2370
Query: 514 LKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYT 573
++ KSD FE FKE + ++ + +K +R+D+G+EF +F EFC +GI A T
Sbjct: 2371 IREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAIT 2550
Score = 87.0 bits (214), Expect = 5e-17
Identities = 38/94 (40%), Positives = 65/94 (68%)
Frame = +1
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
YI +S + +W+K M+ E + Q + ++CD+ SAI+++ + + H RTKHI+IR H++
Sbjct: 4408 YIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYI 4587
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFK 1274
RD+++ K I +E V +EE ADIFTK+L ++F+
Sbjct: 4588 RDLVDDKVITLEHVDTEEQIADIFTKALDANQFE 4689
>TC213365 similar to UP|Q6I8L6 (Q6I8L6) Reverse transcriptase (Fragment),
partial (10%)
Length = 440
Score = 97.4 bits (241), Expect = 3e-20
Identities = 45/101 (44%), Positives = 68/101 (66%)
Frame = +3
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
Y+ + E IWL+G+I ++ I+Q I+ DS SAI A Q++H+RTKHI++R HF+
Sbjct: 36 YMALTEAAKEGIWLRGLINDLRINQEYANIYYDSLSAICFAKDQVHHDRTKHIDVRYHFI 215
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFKHCLDLIN 1281
R + IKV K+++ NPAD+F K +P+S+F HCL L+N
Sbjct: 216 R---SERRIKVHKISTLHNPADMFPKLVPKSKFDHCLSLLN 329
>BI784757
Length = 430
Score = 96.3 bits (238), Expect = 8e-20
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = +1
Query: 450 DFCDNCTLGKQHKVKFGVGVH-KSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDDYSRR 508
+ CD C KQ + F V ++ E ++SD+ GP ++ GG YF S ID+ +R+
Sbjct: 61 EVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRK 240
Query: 509 VWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGI 564
VWVY+++ KSD FE F+++ + + Q G+ +K+LRT+ G E+V +F EFC ++GI
Sbjct: 241 VWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCDQQGI 408
>CO981347
Length = 624
Score = 94.0 bits (232), Expect = 4e-19
Identities = 73/180 (40%), Positives = 96/180 (52%), Gaps = 9/180 (5%)
Frame = +2
Query: 521 FEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGIKRHRIVAYTSTERS-C 579
F KF+E L+ NQ+GTKLKVLRTDNG EFVLEQFNEFCRK GIKRH+IV +T +
Sbjct: 107 F*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLA 286
Query: 580 *KNEQDLVGACEVYAAGSWIVQEFLGRGC*YCSIFD*QMSINRDRSQDTYGC---LEWET 636
+ ++ + + + F G S INR S T G +E +
Sbjct: 287 ERMNMTILERVRCMLLSARLPKTFWGEAANTTSYL-----INRCPS-STLGFKTPMEAWS 448
Query: 637 GRLL*LESFRSFSVF-----SCQARQT*C*SCEVYFHELS*RCERLQTVEDGTWRIKIYY 691
G *L FR V+ SC R+ C C+V H LS*R ++Q +E GTW K+++
Sbjct: 449 GETT*L--FRIKGVWITGL*SC*TRKAGCKGCKVCVHWLS*RS*KVQAMEIGTW*DKMHH 622
Score = 62.8 bits (151), Expect = 1e-09
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +3
Query: 486 PA*VKTYGGGSYFTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILV 531
P+ VKT+GG SYF +IIDD+SRRVW+Y+LKNKS++F K E DIL+
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF-KNSENDILL 137
>AW760164 similar to GP|11994422|dbj oxidoreductase short-chain
dehydrogenase/reductase family-like protein {Arabidopsis
thaliana}, partial (9%)
Length = 428
Score = 92.8 bits (229), Expect = 9e-19
Identities = 48/91 (52%), Positives = 68/91 (73%), Gaps = 1/91 (1%)
Frame = +3
Query: 2 MGS-KWDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEKTEMNDKAV 60
MGS K+++EKFTG N FGL +KMRA+L+Q+ VEAL E ++ + +K + KA
Sbjct: 75 MGSAKYEVEKFTGQNDFGLC*LKMRALLVQQGLVEALDGEIKLEKMMADGDKKALLQKAY 254
Query: 61 SAIILCLGDKMLREVSRETTAVSMWNKLDLL 91
+AIIL LGDK+LR+VS+ETTAV +W+KL++L
Sbjct: 255 NAIILSLGDKVLRQVSKETTAVGVWSKLEVL 347
>TC204791 weakly similar to UP|O82196 (O82196) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 880
Score = 87.0 bits (214), Expect = 5e-17
Identities = 43/88 (48%), Positives = 58/88 (65%)
Frame = +1
Query: 1193 WLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEIKVE 1252
WL G+I + Q I CD+ SAI LA Q++HERTKHI+IR HF+ K +KV+
Sbjct: 214 WLSGLISNLRFPQEKAIIFCDNLSAICLAKDQVHHERTKHIDIRYHFIH---FEKRVKVQ 384
Query: 1253 KVASEENPADIFTKSLPRSRFKHCLDLI 1280
KV + ENP D+FTK + R++F H LDL+
Sbjct: 385 KVDTRENPTDMFTKPVLRNKFMHYLDLL 468
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 85.9 bits (211), Expect = 1e-16
Identities = 49/130 (37%), Positives = 71/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 446 LNKLD-FCDNCTLGKQHKVKFGVGVH-KSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIID 503
+N LD CD C +GK+H+ F G + + + VH DL + T+G +YF + ID
Sbjct: 310 MNILDGVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLCTVE-IPTHGDNNYFITFID 486
Query: 504 DYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKG 563
D+S+++WVY LK KS+A FK + E Q G K+K L D GQE++ + F K G
Sbjct: 487 DFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYL--SYTIFFEKHG 660
Query: 564 IKRHRIVAYT 573
I+ YT
Sbjct: 661 IQHQLTTKYT 690
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 79.0 bits (193), Expect = 1e-14
Identities = 34/80 (42%), Positives = 56/80 (69%), Gaps = 1/80 (1%)
Frame = +2
Query: 1190 EAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
E +W+K + E+ + +K++CD+Q+A+H+A++ ++HERTKHI I HF+R+ + +KE
Sbjct: 191 ELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKE 370
Query: 1249 IKVEKVASEENPADIFTKSL 1268
I E + S + P DI TKSL
Sbjct: 371 IVTEFIGSNDQPVDILTKSL 430
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 75.5 bits (184), Expect = 1e-13
Identities = 37/94 (39%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +3
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQG-CVKIHCDSQSAIHLANHQIYHERTKHINIRLHF 1239
Y+ + AIWL+ ++ E+ + Q ++I D++SA+ LA + ++HE++KHI+ R HF
Sbjct: 117 YVAATSCVCHAIWLRNLLKELKMPQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHF 296
Query: 1240 VRDMIETKEIKVEKVASEENPADIFTKSLPRSRF 1273
+R+ IE KE+K++ V S++ ADIFTK L F
Sbjct: 297 IRECIEKKEVKLKYVMSQDQAADIFTKPLKLETF 398
>BU545438
Length = 579
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = -1
Query: 1190 EAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
+AI L+ ++ +MG Q KI+CD++SAI +A + +YH RTKHI I+ HF+R+ TKE
Sbjct: 555 QAIXLRRILEDMGEKQDKPTKINCDNKSAIAMAKNPVYHNRTKHIAIKYHFIREAEATKE 376
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFK 1274
IK++ +E+ IFTK+L RF+
Sbjct: 375 IKLDYCRTEDQXXXIFTKALXXXRFE 298
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 74.7 bits (182), Expect = 2e-13
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 1190 EAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
E +W+K + E+ + +K++CD+Q+A+H+A++ ++HER KHI I HF+R+ + +KE
Sbjct: 622 ELMWIKQXLQELRFCEVVQMKLYCDNQAALHIASNPVFHERAKHIEIDCHFIREKLLSKE 443
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFKH-CLDLINFI 1283
I E + S + P +I TKSL +R + C L + I
Sbjct: 442 IITEFINSNDQPTNILTKSLRGTRIQSICPSLAHMI 335
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 72.0 bits (175), Expect = 2e-12
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +1
Query: 1190 EAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
+A+W+ ++ E+ + + V + D++SAI+LA H H R+KHI +R H++RD +
Sbjct: 397 QAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQVSKGN 576
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFKH-CLDLIN 1281
+ VE +EE AD+ TK + SRFK C +L+N
Sbjct: 577 VTVEYCKAEEQLADLMTKPIQVSRFKQICSELVN 678
>CD394944
Length = 555
Score = 71.2 bits (173), Expect = 3e-12
Identities = 33/65 (50%), Positives = 49/65 (74%)
Frame = +3
Query: 1216 SAIHLANHQIYHERTKHINIRLHFVRDMIETKEIKVEKVASEENPADIFTKSLPRSRFKH 1275
SAI + N Q+YHERTK ++I+LHFV E K++ ++KV +++NP+D+ TK LP S+F +
Sbjct: 3 SAIQIEN-QVYHERTKQVDIKLHFVT---EVKDVTIQKVTTDDNPSDMITKMLPSSKFYY 170
Query: 1276 CLDLI 1280
C DLI
Sbjct: 171 CWDLI 185
>BI701169
Length = 407
Score = 70.9 bits (172), Expect = 4e-12
Identities = 31/73 (42%), Positives = 47/73 (63%)
Frame = +2
Query: 498 FTSIIDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNE 557
F IDD+SR+ WVY K+K + FE FK++ +VE + G K+K +R+D G EF +F +
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 558 FCRKKGIKRHRIV 570
+C GI+R +V
Sbjct: 293 YCDDHGIRRPLMV 331
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 67.8 bits (164), Expect = 3e-11
Identities = 54/182 (29%), Positives = 88/182 (47%), Gaps = 2/182 (1%)
Frame = +2
Query: 385 IAKGSKIHGLYILEGSTIIAHASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLL--G 442
I G + HGLY L+ + ++V S KL H RLGH L+K ++
Sbjct: 227 IGVGIESHGLYYLKPNLSWVCSAVTS------PKLLHERLGHP------HLSKLKIMVPS 370
Query: 443 NEKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLGPA*VKTYGGGSYFTSII 502
EK+ L FC++C LGK + + PF +H D+ GP V + YF + I
Sbjct: 371 LEKIKDL-FCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSM-SYRYFVTFI 544
Query: 503 DDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKK 562
D++S+ V+++K +S+ F ++ Q G +K+LR+DN +E+ + F +
Sbjct: 545 DEFSQCTRVFLMKERSEIL-SFLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPFXSAQ 721
Query: 563 GI 564
GI
Sbjct: 722 GI 727
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 66.6 bits (161), Expect = 7e-11
Identities = 30/86 (34%), Positives = 57/86 (65%), Gaps = 1/86 (1%)
Frame = -2
Query: 1190 EAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKE 1248
+ +WLK ++ E+ + +K++CD+++AI+++ + + H+RTKH+ I HF+++ ++T
Sbjct: 502 QILWLKRILEELQLPMTLPMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGL 323
Query: 1249 IKVEKVASEENPADIFTKSLPRSRFK 1274
I + V S + ADI TK L RS F+
Sbjct: 322 ICMPFVPSSQQVADILTKGLFRSNFE 245
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 58.2 bits (139), Expect(2) = 1e-10
Identities = 25/56 (44%), Positives = 41/56 (72%), Gaps = 1/56 (1%)
Frame = +2
Query: 1190 EAIWLKGMIGEMGI-SQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMI 1244
E IW+K ++ E+ S +K+ CD+Q+A+H+A++ ++HERTKHI I HFVR+ +
Sbjct: 167 ELIWIKQLLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 13/30 (43%), Positives = 21/30 (69%)
Frame = +3
Query: 1246 TKEIKVEKVASEENPADIFTKSLPRSRFKH 1275
+KE+ +E V+S + A+IFTKSL R ++
Sbjct: 339 SKEVIIEFVSSNDQLANIFTKSLRGPRIQN 428
>TC232910 similar to UP|Q6I8N0 (Q6I8N0) Pol polypeptide, partial (3%)
Length = 690
Score = 64.7 bits (156), Expect = 3e-10
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Frame = +2
Query: 303 YFETLELEEGGVVRLGNNKACKIQGIGTIRLKMFDDRDFLLKDVRYIPELRRNLISISMF 362
+ E +++G +V +GN I G+G + L +F L DV ++P +R+NL+S +
Sbjct: 206 FMEFRPIDDGSIVNMGNVATEPILGLGCVNL-VFTSGKSLYLDVLFVPGIRKNLLSGMIL 382
Query: 363 DGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTIIAHASV-----PSVDTLDIT 417
+ G+ +E +S + G + + ++ L H SV S+ + +
Sbjct: 383 NNCGFKQVLESDKYILSRHGSFVGFGYRCNEMFKLNIDVPFVHESVCMASCSSITNMTKS 562
Query: 418 KLWHLRLGHVSERGLVELAKQGLLGNEKLNKLDFCDNCTLGK 459
++WH RLGHV + L +++K ++ +N ++ C C L K
Sbjct: 563 EIWHARLGHVHYKRLKDMSKTCMIPPFDMN-IEKCKTCMLTK 685
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.343 0.153 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,439,854
Number of Sequences: 63676
Number of extensions: 820634
Number of successful extensions: 7510
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 5447
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 1822
Number of HSP's gapped (non-prelim): 5891
length of query: 1283
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1175
effective length of database: 5,762,624
effective search space: 6771083200
effective search space used: 6771083200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC135504.5