BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.2 - phase: 0 /pseudo
(2338 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 148 2e-35
CF922341 97 1e-19
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 91 6e-18
CF922488 80 1e-14
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 69 3e-11
BU084093 66 2e-10
NP334778 reverse transcriptase [Glycine max] 62 4e-09
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 59 2e-08
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 59 3e-08
BI674393 55 5e-07
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 55 5e-07
AW706233 55 5e-07
CF921210 51 5e-06
TC228885 51 7e-06
CF922207 47 7e-05
BQ628592 38 2e-04
CA953191 42 0.002
TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like,... 42 0.004
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 41 0.007
TC228886 40 0.009
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 148 bits (374), Expect = 2e-35
Identities = 71/137 (51%), Positives = 104/137 (75%)
Frame = +1
Query: 751 SKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVDRFGDIVGNITSCNNLWFSEDEMPEA 810
+++S+L LL+SSE HR L+KVL +A+V +++V+ FG +V NIT+ N L F+E+E+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 811 GKYHNLALHISVNCKSDMLSNVLVDTGASLNVMPKSTLDQLCYRETPLRRSTFLVKAFDG 870
G+ HN ALH+SV C +++ VL+D G SLNVMPKSTLD+L + + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 871 SRKNVLGEIDLPMTIGP 887
+R+ V GEIDLP+ IGP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>CF922341
Length = 675
Score = 96.7 bits (239), Expect = 1e-19
Identities = 63/179 (35%), Positives = 88/179 (48%), Gaps = 7/179 (3%)
Frame = +1
Query: 83 IPGANLASIGITLTQAT---ATVTEPVMITVPQGTHAGAHRGSTPITGTMEERIEELAK- 138
IP NLA LT AT A P+ T+ + T + E+ K
Sbjct: 130 IPHHNLADFETCLTYATEGQAVGGIPLRNTLEGPQYHPQLHLLHSTTSKNPHVMAEMGKL 309
Query: 139 -ELRREIKANRGSSDTI--KTHDLCLVPKVDIPKKFKVPEFDRYNGLTCPQNHIIKYVRK 195
L ++A G D +L LVP + P KFKV +FD+Y G TCP+NH+ Y +K
Sbjct: 310 DHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQK 489
Query: 196 MGNYSDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKNHYGFNTRLKPSR 254
MG Y+ ++ L+IH FQ+SL A WYT+L VH++ +L AF Y +N + SR
Sbjct: 490 MGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYNFDMVLSR 666
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 90.9 bits (224), Expect(2) = 6e-18
Identities = 83/233 (35%), Positives = 108/233 (45%)
Frame = +2
Query: 1922 TINPGITTSNSSC*AVSIHRVLPTKTRRL*EDWLVGSY*MGTFCTRETTTWYC*DVLMNT 1981
T++ GI+TS+ *A + + LPT R *E W S * +C RETTT V M
Sbjct: 128 TVSLGISTSSDMS*AKNTCQRLPTMIRGH*EGWRPVSS*AEAYCIRETTT*NLCGVWMPG 307
Query: 1982 KQSS*CMMYMTVPSGPTLRGTLCQESCCEQVTTG*PWSMIATNTPKSAINVKSVLIRFMC 2041
+Q +* M T G L EQV TG PW +I + +A NVK I M
Sbjct: 308 RQIT*SRKSMRARLERTPTGMLWPGRS*EQVITGLPWKVIVVSM*GNATNVKRSQIMSMP 487
Query: 2042 LRMPSMLSPPHGRSPCGAST*LEELNRKHQMVIVSS*WQLTTSPNGLKRHLIPM*PSKW* 2101
R+ M PP G SPCG L+ + +MVI SS + SP+G ++ IP W
Sbjct: 488 HRIL*MSCPPLGLSPCGE*MSSGPLSPRPRMVIASSS*R*IISPSGSRQLPIPTS*GVWW 667
Query: 2102 PSSSGTTSFVDMVFPARSLPTMVPT*TTMWCKLFVKNSRSNIIILLLIGLR*M 2154
S S DMV R T PT* T F ++ +S+I I G R*+
Sbjct: 668 SGSLRKRSSADMVCQGRLSRTTAPT*ITR*WGKFARSLKSSITIPXPTGQR*I 826
Score = 20.4 bits (41), Expect(2) = 6e-18
Identities = 8/30 (26%), Positives = 12/30 (39%)
Frame = +1
Query: 1896 KCNALKDLRMCSLLGM*SIRLVKMWLTINP 1925
KC LR+CS + ++ W P
Sbjct: 7 KCRCAATLRLCSXNAARDLPYIEFWCRGKP 96
>CF922488
Length = 741
Score = 79.7 bits (195), Expect = 1e-14
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 3/218 (1%)
Frame = +2
Query: 1333 KEGWKSPDMC*LQRPEQSQSKRQFPITPY*CACRQYCSVQGVLLHGWFLRLQSDQNVP*R 1392
+ GW+ ++ L R + SQSK T Y + + +LLHGW RL D++
Sbjct: 8 ERGWEGVNVRGLSRSKLSQSKG*VSFTAYQRSRG*HDQFFPILLHGWIFRL*PDKDSTRG 187
Query: 1393 *RKDVFYHPMGYFLLQSDVVRPNKCWCYLPKRNDYSVS*HDSQRSRNICEQYDCEVKR*G 1452
KD F++ MG LL VV +CW +P + + HD+Q R + +D E+K G
Sbjct: 188 YGKDNFHYSMGNLLL*GYVVWAEECWGNIPAGHGGIILGHDAQGDRGLHG*HDREIKNGG 367
Query: 1453 ATCRILDKNVRKVEKVQASIEP*QMYVRRQIWKVTRLH---CQPKGH*SRP**SPRHPRN 1509
T K V +Q E ++YV +I KV RL+ + +G + P +
Sbjct: 368 GTPCQFAKVV*ATT*IQVETESRKVYV*GKIQKVARLY**LERNRGGFEQGESDP*DGQA 547
Query: 1510 ADRETSQRFPRAIELHLPIHISHDRNLRADLQATQEES 1547
RE S RF +ELH IHI + +LRA +ES
Sbjct: 548 TYREASPRFLGEVELHRKIHIIVNCHLRASFHIVVQES 661
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 68.6 bits (166), Expect = 3e-11
Identities = 50/125 (40%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Frame = +1
Query: 910 PWTHDAGAVTSTLHQKLKFVKNGKLVTIHGEETYLVSQLSSFSCIEAGSAE-GTAFQGLT 968
PW H G V STLHQKLKFV G LV + GEE LVS SS +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 969 IEGTEPKKAGAAMASLKDA---QKAVQEGQ----AVG*GK-------LIQLRGNKHKEGL 1014
+ + L DA V G +G GK LI +GN+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1015 GFSPT 1019
G+ PT
Sbjct: 361 GYKPT 375
Score = 43.5 bits (101), Expect = 0.001
Identities = 28/76 (36%), Positives = 40/76 (51%)
Frame = +2
Query: 1255 KIPGYFCMVV*RYARSRS*DCGTSDPNKA*MSSRQAEIEKDSSRYGSQD*E*GSKAD*CG 1314
++P + C+V+ RYAR * C +K+ + +AE EKD +R +D K *
Sbjct: 1085 RLPRHLCLVIPRYARFEF*HCTAPITSKSRVFPGKAETEKDEARNILEDKRRSEKVI*RW 1264
Query: 1315 FSHDSRVS*MGCQYCT 1330
FS VS MGCQ+ T
Sbjct: 1265 FSGRRSVSKMGCQHRT 1312
>BU084093
Length = 421
Score = 66.2 bits (160), Expect = 2e-10
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Frame = -1
Query: 391 QYSQH-PFFP----------PFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARP 439
QY+QH P F P + P PQVP + + T+ + +
Sbjct: 406 QYAQHHPSFSAHTGNASSSTPVQPKAPAQREAPQVPTPNTTRPVGNSNTTRNFPPRPFQE 227
Query: 440 TFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYA 499
F P+PM Y +LLP+L+ G+ P P + + C +H G GH VE C A
Sbjct: 226 -FTPLPMTYEDLLPSLIANHLAVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLA 50
Query: 500 LKYIVKKLIDQGKLTF 515
LKY V+ L+D G LTF
Sbjct: 49 LKYKVQHLMDAGWLTF 2
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 61.6 bits (148), Expect = 4e-09
Identities = 46/141 (32%), Positives = 65/141 (45%)
Frame = +2
Query: 1340 DMC*LQRPEQSQSKRQFPITPY*CACRQYCSVQGVLLHGWFLRLQSDQNVP*R*RKDVFY 1399
D+C L R + SQSK F T + + + +L HGW L SD++ KD F+
Sbjct: 5 DVCGLSRSKPSQSKG*FSFTAHRHSHG*HGQFCPILFHGWIFGL*SDKDGTRGYGKDNFH 184
Query: 1400 HPMGYFLLQSDVVRPNKCWCYLPKRNDYSVS*HDSQRSRNICEQYDCEVKR*GATCRILD 1459
+ MG LL DVV + W LP + + HD+Q R +C D E+K G T
Sbjct: 185 YSMGNLLL*GDVVWAEEFWGNLPSGHGGIIPGHDAQGDRGLCG*NDREIKNGGGTPSQFA 364
Query: 1460 KNVRKVEKVQASIEP*QMYVR 1480
K V +Q E ++ VR
Sbjct: 365 KFVWATT*IQVETESQEVCVR 427
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 58.9 bits (141), Expect = 2e-08
Identities = 54/170 (31%), Positives = 81/170 (46%), Gaps = 4/170 (2%)
Frame = +3
Query: 1809 SRKQLT*ESNTSTSMEIRHLSSTR*KANGRPTMPS*FLTV-ITRDVC*HILQRSNCTISL 1867
SR+QLT S+ S M +H T *+ N + P+*+ T I+R+ +++ + T+ L
Sbjct: 207 SRQQLTPMSSYSRCMGTQHW*FTS*EGNAKLETPT*YPTKPISRNWLVSLMRSPSITL-L 383
Query: 1868 GMRTKWLILLLLYPPCFE*TIGMMCQ*SKCNALKDLRMCSLLGM*SIRLVKMWL---TIN 1924
+ KW + L L PC S + + R SL + +V W T++
Sbjct: 384 ERKIKWQMRLPL*CPC-----------SS*HRMGTYRTLSLGVVADPHIVVWWKRNGTVS 530
Query: 1925 PGITTSNSSC*AVSIHRVLPTKTRRL*EDWLVGSY*MGTFCTRETTTWYC 1974
GI S+ + A S H LPT T+ DW S * +CTRET TW+C
Sbjct: 531 LGILISSDTLKAKSTHWRLPTTTKGERGDWQPASS*AEAYCTRETMTWFC 680
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 58.5 bits (140), Expect = 3e-08
Identities = 56/167 (33%), Positives = 81/167 (47%), Gaps = 1/167 (0%)
Frame = +2
Query: 2158 RQPIRTSRRLSRKW*LPTKIGMRCCPMLCMATVLQCAVQPGQPLSLLHMVWKQFFLWKWR 2217
++PIR S+RLS++ T+IG RC T LQC Q GQ S +M W+ + + +
Sbjct: 2 KRPIRISKRLSKR*PCHTRIGTRCSHSRYTVTGLQCERQLGQRRSHWYMGWRLCYRLR*K 181
Query: 2218 SHLSV*SWKQSYPR-LNGTKAGMIS*TWLRKNVWMPWLVDSHIKQE*RLSLTRNSVLENS 2276
S SW+ R +G K MIS T LR + P ++ + +E*R+ TR +S
Sbjct: 182 SR-H*GSWQNPD*RNQSGLKRAMISSTSLRVSA*RP*VMGACTSKE*RVHSTRRYACASS 358
Query: 2277 RKVNLY*KGG*ASNPTQGASGRLTMKVLMLSRRPSPVVL*FLHTWMV 2323
+ L *+ + T +G T K L+L R P L TWMV
Sbjct: 359 MRETLC*RKCPMLSRTIEGNGPRTTKGLLL*RGLFPEEPWCLPTWMV 499
>BI674393
Length = 152
Score = 54.7 bits (130), Expect = 5e-07
Identities = 24/44 (54%), Positives = 38/44 (85%)
Frame = +1
Query: 730 EILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVL 773
E LRII++S++K+++QL +TP+++S+L LL+SSE HR L+KVL
Sbjct: 16 EFLRIIQQSEFKVIEQLNKTPARVSLLELLMSSEPHRALLVKVL 147
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 54.7 bits (130), Expect = 5e-07
Identities = 38/116 (32%), Positives = 62/116 (52%)
Frame = +1
Query: 1375 LLHGWFLRLQSDQNVP*R*RKDVFYHPMGYFLLQSDVVRPNKCWCYLPKRNDYSVS*HDS 1434
L++GWFL + S+ + *R R+D F HPMG L SD +R K W L + V *+D+
Sbjct: 4 LIYGWFLGV*SNIDGT*RCREDHFRHPMGDIQL*SDGLRAEKYWGNLSACHGGVVP*YDA 183
Query: 1435 QRSRNICEQYDCEVKR*GATCRILDKNVRKVEKVQASIEP*QMYVRRQIWKVTRLH 1490
+R + +DC+V * T V KV ++ +P QM++ ++ + R++
Sbjct: 184 *GNRGLRR*HDCQVSD*DRTPCQSV*AVWKVAEIPIKTKPNQMHIWGEVGEAARIY 351
>AW706233
Length = 376
Score = 54.7 bits (130), Expect = 5e-07
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -3
Query: 135 ELAKELRREIKANRGSSDTI--KTHDLCLVPKVDIPKKFKVPEFDRYNGLTCPQNHIIKY 192
E L+ KA G D +L LV + P KFKV FD+Y G TCP+NH+ Y
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168
Query: 193 VRKMGNYSDND 203
+KMG Y+ ++
Sbjct: 167 CQKMGAYAKDE 135
>CF921210
Length = 790
Score = 51.2 bits (121), Expect = 5e-06
Identities = 43/119 (36%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +2
Query: 402 YHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPT--FPPIPMLYFELLPTLLLRG 459
YH+ LP Q + P + Q T Q+ AR F PIP+ Y +LL LL
Sbjct: 236 YHKVCLPHFQ*RTP------PLAQTKNTNQEVNFAARKPVEFTPIPVSYADLLSYLLDNS 397
Query: 460 HCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 518
K PL + S+ C GAL H +E C ALK V+ LID G L FE N
Sbjct: 398 MVAITLAKVHQPPLF*GYDSNATCG---GALRHSIEHCRALKRKVQGLIDAGWLKFEEN 565
>TC228885
Length = 901
Score = 50.8 bits (120), Expect = 7e-06
Identities = 42/126 (33%), Positives = 52/126 (40%), Gaps = 2/126 (1%)
Frame = -3
Query: 395 HPFFPPFYHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPT--FPPIPMLYFELL 452
H P H+ LP Q + P + Q T Q+ AR F PIP+ Y +LL
Sbjct: 743 HKGHP*INHKVCLPHFQ*RTP------PLAQTKNTNQEMNFAARKPVEFTPIPVSYADLL 582
Query: 453 PTLLLRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGK 512
P LL K P + S+ C H A G +E ALK V+ LID G
Sbjct: 581 PYLLDNSMVAITLAKVHQPPFLREYDSNAMCACHGEAPGRSIEHYRALKRKVQGLIDAGW 402
Query: 513 LTFENN 518
L FE N
Sbjct: 401 LKFEEN 384
>CF922207
Length = 616
Score = 47.4 bits (111), Expect = 7e-05
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -1
Query: 426 QPPTQQQQ---QQQARPTFPPIPMLYFELLPTLLLRGHCTTRQGKPPPDPLPPRFRSDLK 482
+P QQ+ QQ+A P L+P L K P P + S+
Sbjct: 616 KPKKHQQKGILQQKACRVHPKFRCHMLNLIPYPLDNSMVAITPTKVPQPPFFREYDSNAT 437
Query: 483 CDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 518
C +H GA GH +E C K+ V LID G L FE N
Sbjct: 436 CAYHGGAPGHSIEHCMTPKHKV*SLIDTG*LKFEEN 329
>BQ628592
Length = 423
Score = 37.7 bits (86), Expect(2) = 2e-04
Identities = 26/69 (37%), Positives = 37/69 (52%)
Frame = -3
Query: 1551 MER*MPRSF**HQDLPAGTTYPCPTRGRKAFDYVFVSV**IRGMRTWSTR*DWKERTCYL 1610
+E+*+PR +Q P + T RK F V V + GMR S R W++ T +L
Sbjct: 400 VEQ*LPRGLRKNQTEPRESLGAHATCNRKTFSPVHDYVRRVYGMRVGSARRLWEKGTSHL 221
Query: 1611 LSEQEVHRL 1619
L +QEV+RL
Sbjct: 220 LFKQEVYRL 194
Score = 27.7 bits (60), Expect(2) = 2e-04
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 1628 KDLLLSGLGRQKPASLFGESYNLVDIQNGSDKVYLRE 1664
KD+L G+G ++ +SY++ QNGS +++L E
Sbjct: 170 KDVLYLGMGVTSS*AVHAQSYHVAYFQNGSCEIHL*E 60
>CA953191
Length = 422
Score = 42.4 bits (98), Expect = 0.002
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 899 INASYSCLLGRPWT-HDAGAVTSTLHQKLKFVKNGKLVTIHGEETYLVSQLSSFSCIE 955
I +Y+ L GRPW H V STLH K K V +GKLV I +E LV + SS IE
Sbjct: 420 ITPTYNGLQGRPWRIHCVKLVPSTLH*K*KIVIDGKLVIIFVKEDLLVGEPSSTPYIE 247
>TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like, partial
(57%)
Length = 926
Score = 41.6 bits (96), Expect = 0.004
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 402 YHQYPLPSGQPQVPVNAIVQQMQQQPPTQQQQQQQARPTFPPIPMLYFELLPTLLLRGHC 461
Y + PL Q + + QQ QQQ QQQQQQQ++ + M + L P LL G
Sbjct: 451 YERLPLEDDQGEEEMQVQQQQQQQQQQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQN 630
Query: 462 TTRQ---GKPPPDPLPPRFRSDL 481
G PP PP F S L
Sbjct: 631 MPHDVFWGAPPRP--PPSF*SPL 693
>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (7%)
Length = 762
Score = 40.8 bits (94), Expect = 0.007
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Frame = +3
Query: 403 HQYPLPSGQPQVPVNAIVQQMQ-QQPPTQQQQQQQARPTFPPIPMLYFELLPTLLL---R 458
HQ LP QP V Q Q QQPP Q QQ A PP P ++ + P L
Sbjct: 132 HQVELPPPQPPVQQQQQPPQQQLQQPPQQPPQQHLAPQQLPPQPPIFQQTYPPFHLPQFH 311
Query: 459 GHCTT----RQGKPPPDPLPPRFRSDLKCDFHQ 487
H + +Q + PP P P F+ + HQ
Sbjct: 312 HHQPSLQFQQQQQQPPQPPPQLFQHQAQPPSHQ 410
>TC228886
Length = 748
Score = 40.4 bits (93), Expect = 0.009
Identities = 19/42 (45%), Positives = 24/42 (56%)
Frame = +3
Query: 477 FRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 518
+ S+ C +H GA GH +E C K+ V LID G L FE N
Sbjct: 153 YDSNATCAYHGGASGHSIEHCMTPKHKV*SLIDTGWLKFEEN 278
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.340 0.147 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,338,052
Number of Sequences: 63676
Number of extensions: 1710021
Number of successful extensions: 15101
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 13438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14572
length of query: 2338
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2225
effective length of database: 5,444,244
effective search space: 12113442900
effective search space used: 12113442900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC135504.2