TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.16 - phase: 0 /pseudo
         (343 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ273711                                                               89  4e-18
CF922015                                                               84  1e-16
CO980191                                                               47  1e-05
TC213512                                                               29  2.7
TC230538                                                               29  3.5
TC210080 weakly similar to UP|Q8VZH8 (Q8VZH8) AT4g30550/F17I23_1...    28  4.6
TC219003 homologue to UP|Q43455 (Q43455) Heat shock transcriptio...    28  4.6

>BQ273711 
          Length = 409

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 39/87 (44%), Positives = 50/87 (56%)
 Frame = -2

Query: 87  RMLETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWW 146
           R L  F +NHPP F G YDP+G + WL E E+IF  M C E  KV + T ML  EA++WW
Sbjct: 261 RGLMAFRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHKVLYATFMLQGEAENWW 82

Query: 147 VSLLPVLEQDGAVVTWAVFRREFLNRY 173
             + P     G V+ W  F+ +FL  Y
Sbjct: 81  KFVKPSFVAPGGVIPWNAFKDKFLENY 1


>CF922015 
          Length = 172

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 35/54 (64%), Positives = 45/54 (82%)
 Frame = -3

Query: 89  LETFLRNHPPTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEA 142
           L+ F RN+PPTFKG YDP+G + WL+E+E+IFRVM+C + QKV F THMLA+EA
Sbjct: 164 LDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3


>CO980191 
          Length = 802

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 23/50 (46%), Positives = 30/50 (60%)
 Frame = +1

Query: 159 VVTWAVFRREFLNRYFPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAK 208
           V+T  VF+  FL ++  ED+    + EFLELKHG+M V  Y   F EL K
Sbjct: 361 VIT*EVFKEIFLEKHLHEDI*NHKKTEFLELKHGNMIVANYLVNFDELPK 510


>TC213512 
          Length = 560

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/27 (40%), Positives = 19/27 (69%)
 Frame = +3

Query: 195 SVTKYAAKFVELAKFYPYYTAEIVEFS 221
           S T+Y+ +F+EL ++YP +T   + FS
Sbjct: 18  SQTRYSQRFIELIRYYPNFTNPNLAFS 98


>TC230538 
          Length = 1261

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 24/73 (32%), Positives = 40/73 (53%), Gaps = 3/73 (4%)
 Frame = +2

Query: 101 KGRYDPDGTQKWLKE-VERIFRVMQCSEVQKVRFGTHMLA--EEADDWWVSLLPVLEQDG 157
           +GRYD DG++K L   V ++F +M  + V   R G  ++A   E   + ++ L + EQ  
Sbjct: 17  EGRYDSDGSEKSLDSFVIQLFELM-LTIVGNPRLGKVVVANIRELVYYTIAFLQMTEQQ- 190

Query: 158 AVVTWAVFRREFL 170
            V TW+V   +F+
Sbjct: 191 -VHTWSVDANQFI 226


>TC210080 weakly similar to UP|Q8VZH8 (Q8VZH8) AT4g30550/F17I23_110, partial
           (45%)
          Length = 693

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
 Frame = -1

Query: 80  AAGNDGVRMLETFLRNHPPTFKGRYDPDGTQK--WLKEVERIFRVMQCSEVQKVR 132
           A G DG  ++    R+HP   +  + P+      W K++ RIF  M+ S   K+R
Sbjct: 516 ANGKDGDSVMVLTPRSHPVGERVTFPPNARPSIWWPKQIPRIFLFMESSLRSKLR 352


>TC219003 homologue to UP|Q43455 (Q43455) Heat shock transcription factor 29
           (Fragment), partial (76%)
          Length = 1188

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
 Frame = -3

Query: 130 KVRFGTHMLAEEADDWWVSLLPV--LEQDGAVVTWAVFRREFLNR 172
           + +F   +L +    +W+ LLPV  L+ + AV++ AV R E L+R
Sbjct: 301 ETQFSPPVLPQPPSPYWL*LLPVPRLQAEPAVISGAVCREEELSR 167


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.355    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,640,731
Number of Sequences: 63676
Number of extensions: 206894
Number of successful extensions: 4511
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4262
length of query: 343
length of database: 12,639,632
effective HSP length: 98
effective length of query: 245
effective length of database: 6,399,384
effective search space: 1567849080
effective search space used: 1567849080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 59 (27.3 bits)