BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135461.9 + phase: 0
(375 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear recept... 112 3e-25
TC206954 homologue to UP|O04133 (O04133) SRC2, partial (97%) 64 1e-10
TC223219 similar to UP|O04133 (O04133) SRC2, partial (30%) 64 1e-10
TC227324 homologue to UP|O04133 (O04133) SRC2, partial (50%) 62 4e-10
TC227325 UP|O04133 (O04133) SRC2, complete 58 6e-09
TC227016 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.... 53 6e-09
TC217852 weakly similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, pa... 50 2e-06
TC222033 49 4e-06
CF806534 44 2e-04
BI498774 41 8e-04
TC230139 UP|Q95RL3 (Q95RL3) LD21089p, partial (8%) 37 0.011
TC220029 36 0.025
TC211707 34 0.094
TC225761 weakly similar to UP|O50006 (O50006) Os-FIERG2 protein,... 33 0.16
TC225763 33 0.21
TC207430 33 0.27
AW734184 32 0.47
TC231391 UP|Q39846 (Q39846) LEA protein, complete 31 1.0
BQ473860 weakly similar to GP|22831331|db contains ESTs AU165964... 30 1.4
TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial ... 30 1.8
>TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear receptor NR4A1
(Orphan nuclear receptor HMR) (Early response protein
NAK1) (TR3 orphan receptor), partial (4%)
Length = 898
Score = 112 bits (280), Expect = 3e-25
Identities = 66/162 (40%), Positives = 95/162 (57%), Gaps = 4/162 (2%)
Frame = +3
Query: 1 MSMLAPPFQLLEINVISAQDLAPVS---KSIKAYAVAWLNPERKLTTQADPHGHNNPTWN 57
M A Q+LEIN+ISAQ + P S + ++ YAV W++P KL T+ D G +NPTWN
Sbjct: 222 MPSAAKIHQVLEINLISAQGMKPPSSPRRRLQTYAVTWIDPATKLRTRVDKLGGHNPTWN 401
Query: 58 EKFVFRVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLL-PRNRKSKIRFVALQ 116
+KF+F V DFL + S + + IYA R L+GTV ++N+ P + F A Q
Sbjct: 402 DKFLFGVTKDFLAGDTSSVCVAIYAVGTFRHHLVGTVRFLISNMFSPDADDATPCFSAFQ 581
Query: 117 VRRPSGRPQGILNIGVNVVDATMRSMPMYSELSSSAVEYYDI 158
+RRPSGR G++NIG V+D + P ++ SA+ Y D+
Sbjct: 582 IRRPSGRFHGVMNIGAMVMDGS--GFPALEKI--SALGYRDL 695
>TC206954 homologue to UP|O04133 (O04133) SRC2, partial (97%)
Length = 1149
Score = 63.9 bits (154), Expect = 1e-10
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Frame = +2
Query: 2 SMLAPPFQLLEINVISAQDLAPVS--KSIKAYAVAWLNPERKLTTQADPHGH----NNPT 55
S++ ++ LE+N+ISA+D+ V+ + YAV L+ + A H H +NPT
Sbjct: 38 SVMTMEYRTLELNIISAKDIKNVNLFSKMDVYAVVTLSGDPLHPQGATTHVHKDAGSNPT 217
Query: 56 WNEKFVFRVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLLPR-NRKSKIRFVA 114
WN F V++ + I++ + L D +IGTV V L L+ R V+
Sbjct: 218 WNYPVKFSVNESLAKENRLSLEIKLVSDRTLGDTVIGTVHVPLRELMDNPGDDGSFRQVS 397
Query: 115 LQVRRPSGRPQGILNIGVNVVDATMRSMPMYSELSSSAVEYYDITKPNKQNQNY 168
QV + SG+ +G LN V + P + V Y T + Y
Sbjct: 398 YQVMKQSGKSKGSLNFSYKVGEHVPAPAPKAPKTGQEPVMAYPPTGAGSSSMPY 559
>TC223219 similar to UP|O04133 (O04133) SRC2, partial (30%)
Length = 738
Score = 63.5 bits (153), Expect = 1e-10
Identities = 47/131 (35%), Positives = 67/131 (50%), Gaps = 5/131 (3%)
Frame = +3
Query: 11 LEINVISAQDLAPVS--KSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDDF 68
LE+N+ SA+DL ++ + YAV L+ ++K T +G NPTWN F D+
Sbjct: 15 LELNLASAKDLKDLNIFSKMDVYAVLSLSGDQKTKTPVHRNGGTNPTWNFPVKFTFDESV 194
Query: 69 LLSEESVIMIEIYAS-AWLRDVLIGTVAVHLNNLL--PRNRKSKIRFVALQVRRPSGRPQ 125
+ I+I + A D IG V V L LL P + KS + V+ QVR+PSG+P+
Sbjct: 195 ARQNRLALEIKIRSERALATDKDIGQVHVPLMELLKQPGDGKS-FQHVSYQVRKPSGKPK 371
Query: 126 GILNIGVNVVD 136
G LN D
Sbjct: 372 GALNFSYKFGD 404
>TC227324 homologue to UP|O04133 (O04133) SRC2, partial (50%)
Length = 568
Score = 62.0 bits (149), Expect = 4e-10
Identities = 43/140 (30%), Positives = 68/140 (47%), Gaps = 7/140 (5%)
Frame = +2
Query: 2 SMLAPPFQLLEINVISAQDLAPVS--KSIKAYAVAWLNPERKLTTQADPHGH----NNPT 55
S++ ++ LE+N+ISA+D+ V+ + YAV L+ + A H H +NPT
Sbjct: 125 SVMTMEYRTLELNIISAKDIKNVNLFSKMDVYAVVTLSGDPLHPQGATTHVHKDAGSNPT 304
Query: 56 WNEKFVFRVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLLPR-NRKSKIRFVA 114
WN F V++ + I++ + L D +IGTV V L L+ R V+
Sbjct: 305 WNYPVKFSVNESLAKENRLSLEIKLVSDRTLGDTVIGTVHVPLRELMDNPGDDGSFRQVS 484
Query: 115 LQVRRPSGRPQGILNIGVNV 134
QV + SG+ +G LN V
Sbjct: 485 YQVMKQSGKSKGSLNFSYKV 544
>TC227325 UP|O04133 (O04133) SRC2, complete
Length = 1235
Score = 58.2 bits (139), Expect = 6e-09
Identities = 42/136 (30%), Positives = 66/136 (47%), Gaps = 7/136 (5%)
Frame = +2
Query: 1 MSMLAPPFQLLEINVISAQDLAPVS--KSIKAYAVAWLNPERKLTTQADPHGH----NNP 54
+S + ++ LE+N+ISA+D+ V+ + YA L+ + A H H +NP
Sbjct: 101 LSAMTMEYRTLELNIISAKDIKNVNLFSKMDVYAAVSLSGDPLHPQGATTHVHKDAGSNP 280
Query: 55 TWNEKFVFRVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLLPR-NRKSKIRFV 113
TWN F V++ + I++ + L D +IGTV V L LL S R V
Sbjct: 281 TWNYPVKFSVNESLAKENRLSLEIKLISDRTLGDTVIGTVHVPLRELLDNPGDDSSFRQV 460
Query: 114 ALQVRRPSGRPQGILN 129
+ QV + S + +G LN
Sbjct: 461 SYQVMKQSRKSKGSLN 508
>TC227016 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (25%)
Length = 1286
Score = 52.8 bits (125), Expect(2) = 6e-09
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Frame = +2
Query: 11 LEINVISAQDLAPVS---KSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDD 67
L++ ++SA+ L V+ ++K Y V W++PER+L T++D G+ +P WNE+F +
Sbjct: 74 LDLTIVSAKHLKNVNWKNGNLKPYVVFWVDPERRLATKSDDSGNTSPVWNERFALPLP-- 247
Query: 68 FLLSEESVIMIEIYAS 83
L +S + +EI+ S
Sbjct: 248 -LPLHDSFLTLEIFHS 292
Score = 25.0 bits (53), Expect(2) = 6e-09
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Frame = +3
Query: 90 LIGTVAVHLNNLLPRNRKSKIRFVALQVRRPSGRPQGILNIGVNVVDATMRSMPMYSELS 149
L+ T+ + L +L + +++R L RPSGRP G +++ + ++
Sbjct: 318 LVATLRLPLKDLHDLHDSTRLRKFPLS--RPSGRPHGKIHLKLGLLGRPQ---------- 461
Query: 150 SSAVEYYDITKPN-KQNQNYDNNSNCDAKHMMTLQRSQSEKNDSTINDYVYNPNGKNGY 207
+D PN N N N C + + S S + Y + +GY
Sbjct: 462 ------FDYASPNPNPNPNPSPNFVCYRGYTPSPSHSHSHSPSPPPSPYTSYTDSYSGY 620
>TC217852 weakly similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, partial (46%)
Length = 1112
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Frame = +1
Query: 29 KAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDDFLLSEESVIMIEIYASAWLRD 88
+ Y V W++P KL+T+ D G + W++ + L E+ + I++ + D
Sbjct: 112 RPYVVVWVDPSNKLSTRVDESGDTDANWDQTLTIPLPPKPL--EDQTLYIDVVHAGSEED 285
Query: 89 V--LIGTVAVHLNNLLPRNRKSKIRFVALQVRRPSGRPQGILNIGVNVVDATMRSMPMYS 146
LIG+ + L ++L + L ++RPSGRP G + + V + + + R+ Y+
Sbjct: 286 TKPLIGSARLKLVDILDDVGIGERVSRTLSLKRPSGRPHGKVEVSVTIREPSYRAQGGYN 465
>TC222033
Length = 523
Score = 48.9 bits (115), Expect = 4e-06
Identities = 29/98 (29%), Positives = 52/98 (52%), Gaps = 4/98 (4%)
Frame = +1
Query: 11 LEINVISAQDL--APVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDDF 68
+E+ +ISA+ + +P + YAV W++P+ K T+ D G+ NP W KF +VD+
Sbjct: 178 IEVCLISARGVRGSPSLWKRQWYAVGWVDPKSKYCTKVDASGNANPVWRTKFALQVDNS- 354
Query: 69 LLSEESVIMIEIYA--SAWLRDVLIGTVAVHLNNLLPR 104
+ + +E+Y+ +L + L G+ V L L +
Sbjct: 355 --EPDLALHVEVYSRDPVFLTEKLHGSATVVLREFLTK 462
>CF806534
Length = 512
Score = 43.5 bits (101), Expect = 2e-04
Identities = 32/128 (25%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Frame = +3
Query: 11 LEINVISAQDL--APVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDDF 68
+E+ ++ A+ L A + + Y + N + + ++ A G NP WNEKF+F+V ++
Sbjct: 90 MEVQLVKAKGLHNADIFGEMDPYVLIQYNDQEQRSSVAIGQG-TNPVWNEKFMFKV--EY 260
Query: 69 LLS-EESVIMIEIYASAWLRDVLIGTVAVHLNNLLPR---NRKSKIRFVALQVRRPSGRP 124
L S ++ ++ +I D +G +H+ +LL + N +K++ + +V R +
Sbjct: 261 LGSGDKHKLIFKIMDQDLYTDEFVGQATIHVKDLLAQGIDNGGAKLQTLKYRVVRANNSY 440
Query: 125 QGILNIGV 132
G +++GV
Sbjct: 441 CGEIDVGV 464
>BI498774
Length = 413
Score = 41.2 bits (95), Expect = 8e-04
Identities = 27/108 (25%), Positives = 47/108 (43%)
Frame = -2
Query: 31 YAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDDDFLLSEESVIMIEIYASAWLRDVL 90
Y V W + L+T D +G+ + WNE + L + I + S L
Sbjct: 334 YVVRWADRSYLLSTSVDENGNTDANWNETLTIPLPAKPLEDQNLFIHVVHAGSGEDTKSL 155
Query: 91 IGTVAVHLNNLLPRNRKSKIRFVALQVRRPSGRPQGILNIGVNVVDAT 138
IG + L +++ + L ++RPSGRPQG + V + +++
Sbjct: 154 IGKAWLRLVDIVNDFGIGERVRCTLSLKRPSGRPQGKAEVSVTIRESS 11
>TC230139 UP|Q95RL3 (Q95RL3) LD21089p, partial (8%)
Length = 731
Score = 37.4 bits (85), Expect = 0.011
Identities = 36/151 (23%), Positives = 66/151 (42%), Gaps = 8/151 (5%)
Frame = +2
Query: 11 LEINVISAQDLAPVSKSIKAYAVAWLNPERKLTTQA---DPHGHNNPTWNEKFVFRVDDD 67
+EI V+SA++L K I+ A + + T A D G + P+WNEK V V
Sbjct: 179 VEITVLSAENLQMNKKPIRGNAFVTVQSDASNDTSATTVDSEGGSYPSWNEKLVMDVP-- 352
Query: 68 FLLSEESVIMIEI---YASAWLRDVLIGTVAV--HLNNLLPRNRKSKIRFVALQVRRPSG 122
I +E+ +SA + + + V + +P N ++ F++ ++
Sbjct: 353 ---LHARFITVEVKCKTSSAGSNSIGVARIPVSDFVGGYVPEN---QLHFLSYRLWDGKV 514
Query: 123 RPQGILNIGVNVVDATMRSMPMYSELSSSAV 153
R G++NI V V A + +S+++
Sbjct: 515 RRNGVVNISVRVKVAQQQQQQQQHSCNSNSM 607
>TC220029
Length = 1096
Score = 36.2 bits (82), Expect = 0.025
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Frame = +1
Query: 11 LEINVISAQDLAPVSKSIKAYAVAWLNPERKLTTQA----DPHGHNNPTWNEKFVFRVDD 66
+E+ ++SA++L KSI+ + + T A D G + P+WNEK V V
Sbjct: 10 VEMTILSAENLQMNRKSIRGSTFVTVQSDTSSDTSAATKVDSEGGSYPSWNEKVVMDVP- 186
Query: 67 DFLLSEESVIMIEI---YASAWLRDVLIGTVAV--HLNNLLPRNRKSKIRFVALQVRRPS 121
I +E+ +S+ V + + V + +P N ++ F++ ++
Sbjct: 187 ----LHARFITVEVKCKTSSSGSNSVGVAQIPVSDFIGGYMPEN---QLHFLSYRLWDGK 345
Query: 122 GRPQGILNIGVNVVDATMRSMPMYSELSSSAV 153
R G++NI V V A S + S +S SAV
Sbjct: 346 VRRNGVINISVRVKVAEHSSCNLNS-MSLSAV 438
>TC211707
Length = 631
Score = 34.3 bits (77), Expect = 0.094
Identities = 24/101 (23%), Positives = 44/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 5 APPFQLLEINVISAQDLAPVSKSIKAYAVA--WLNPERKLTTQADPHGHNNPTWNEKFVF 62
+P L + VI AQDL P K ++ L + + T + G NP WN++ +F
Sbjct: 342 SPKLYYLRVQVIEAQDLVPSEKGRPPDSLVRVQLGNQMRFTRPSQIRG-TNPVWNDELMF 518
Query: 63 RVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLLP 103
+ F E I++ + ++G + + ++LP
Sbjct: 519 VAAEPF----EDFIIVTVEDKVGPNVEILGREIIXVRSVLP 629
>TC225761 weakly similar to UP|O50006 (O50006) Os-FIERG2 protein, partial
(35%)
Length = 819
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 7 PFQLLEINVISAQ--DLAPVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRV 64
P LE+ +ISA+ D SI Y + + K +T + G + P WNE F+F V
Sbjct: 157 PRGTLEVVLISAKGIDDNDFLSSIDPYVILTYRAQEKKSTVQEDAG-SKPQWNESFLFTV 333
Query: 65 DDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLN 99
D SE ++ +++ + +D +G +HL+
Sbjct: 334 SDS--ASELNLKIMD--KDNFSQDDCLGVATIHLD 426
>TC225763
Length = 847
Score = 33.1 bits (74), Expect = 0.21
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +2
Query: 7 PFQLLEINVISAQ--DLAPVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRV 64
P LE+ +ISA+ D SI Y + + K +T + G + P WNE F+F V
Sbjct: 152 PRGTLEVVLISAKGIDDNDFLSSIDPYVILTYRAQEKKSTVQEDAG-SKPQWNESFLFTV 328
Query: 65 DDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLN 99
D SE ++ +++ + +D +G +HL+
Sbjct: 329 SDS--ASELNLKIMD--KDNFSQDDCLGEATIHLD 421
>TC207430
Length = 924
Score = 32.7 bits (73), Expect = 0.27
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Frame = +2
Query: 1 MSMLAPPFQLLEINVISAQDLAPV----SKSIKAYAVAWLNPERKLTTQADPHGHNNPTW 56
MS + +L++ + A+D+ + + + A NPE ++T+ G NP +
Sbjct: 278 MSNVEEYLGVLDVYIHQARDIQNICIYHKQDVYAKICLTSNPETTVSTKTINGGGRNPVF 457
Query: 57 NEKFVFRVDDDFLLSEESVIMIEIY----ASAWLRDVLIGTVAVHLNNLLPRNRKSKIRF 112
NE R+D + + ++ + EI+ +L D L+G V L+ +L +N K + F
Sbjct: 458 NEN--LRID---VRTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEF 622
Query: 113 VALQVRRPSGRPQGILNIGVNVVDA-----TMRSMP 143
+L P G + + ++ A T+ +MP
Sbjct: 623 -SLSSTDLFHSPSGFVQLSLSYTGASPDVMTISAMP 727
>AW734184
Length = 398
Score = 32.0 bits (71), Expect = 0.47
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 297 VYDHLGNNNNGSVKKTGKQTKGKGKGKNRRQGS 329
+Y ++G+N NG VKK K+ K K K K + GS
Sbjct: 10 LYLYMGSNGNGQVKKKKKKKKKKKKKKKKLLGS 108
>TC231391 UP|Q39846 (Q39846) LEA protein, complete
Length = 2208
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +3
Query: 303 NNNNGSVKKTGKQTKGKGKGKNRRQGSGLFSC 334
N N K+TGK++ KG+N R+GS C
Sbjct: 822 NTNRTREKRTGKESCSTSKGRNVREGSARLCC 917
>BQ473860 weakly similar to GP|22831331|db contains ESTs AU165964(S1723)
D40008(S1723)~phosphoribosylanthranilate
transferase-like protein, partial (7%)
Length = 397
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Frame = +3
Query: 11 LEINVISAQDLAPVSK--SIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKFVFRVDD 66
L + V+ A DL P S Y ++ TT + NP WNEKF F V D
Sbjct: 174 LGVEVVGAHDLMPKDGQGSCSTYVELHFGGQKFGTTTKEKD--LNPVWNEKFYFNVTD 341
>TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial (76%)
Length = 1867
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +2
Query: 7 PFQLLEINVISAQDLAPVS------KSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEKF 60
P +L +NV+ AQ L + +K P +K T + + NP WNEKF
Sbjct: 872 PVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRK---NLNPEWNEKF 1042
Query: 61 VFRVDDDFLLSEESVIMIEIY 81
V D + V+ +++Y
Sbjct: 1043KIVVKD----PQSQVLQLQVY 1093
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,169,799
Number of Sequences: 63676
Number of extensions: 252181
Number of successful extensions: 1074
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of query: 375
length of database: 12,639,632
effective HSP length: 99
effective length of query: 276
effective length of database: 6,335,708
effective search space: 1748655408
effective search space used: 1748655408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC135461.9