BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135461.4 + phase: 0
(631 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226970 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 389 e-108
TC228215 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 320 1e-87
TC228213 homologue to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-... 219 3e-57
TC228626 193 2e-49
TC222659 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 185 5e-47
TC210364 similar to UP|O80709 (O80709) F8K4.24 protein (Fragment... 167 2e-41
BI468997 157 1e-38
TC222091 similar to UP|O80709 (O80709) F8K4.24 protein (Fragment... 139 3e-33
TC226969 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 116 3e-26
BE474220 111 8e-25
AW186308 72 1e-12
TC228214 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-li... 66 4e-11
BU765758 64 3e-10
AW100029 54 2e-07
TC228625 49 9e-06
CF922367 40 0.002
AW349690 38 0.016
CF920966 38 0.016
TC214538 34 0.17
TC231026 similar to UP|Q9SQK3 (Q9SQK3) Ankyrin repeat protein EM... 34 0.17
>TC226970 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(25%)
Length = 1300
Score = 389 bits (998), Expect = e-108
Identities = 209/308 (67%), Positives = 232/308 (74%), Gaps = 27/308 (8%)
Frame = +1
Query: 349 SDGVCQDEEPGAGGGGFDGRGNLYENCEVNGVVKEKKGWFGWNKNP-------------- 394
SDG +DEE GA G +G EN E NGVVKEKK WFGWNK
Sbjct: 1 SDGTYEDEEHGAFDGQENGSAASRENSEANGVVKEKKSWFGWNKKSLKSSSDDPEDSKAV 180
Query: 395 -----------NQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLKKKKKKGASN-ESKSES 442
NQRS+DQ KL +F +D + S+KGKD+N+KKKKKKGA+N ESK+ES
Sbjct: 181 KKNSRFGSEGSNQRSADQPKLASDFLRED--SVDSRKGKDKNIKKKKKKGANNNESKNES 354
Query: 443 EFKKGVRPVLWLTQDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPPGTFPVKVAIP 502
E+KKG+RPVLWLT DFPLKTDELLPLLDILANKVKAIRRLRELLTTKLP GTFPVKVAIP
Sbjct: 355 EYKKGLRPVLWLTPDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPHGTFPVKVAIP 534
Query: 503 IVPTIRVIVTFTKFEELQTPEEFSTPLSSPVSFQDAKYKESEGSTSWVSWMKGSRGMPSS 562
IVPTIRV+VTFTKFEELQ EEFSTPLSSP F DAK KESEGS+SW+SWMKGSRG SS
Sbjct: 535 IVPTIRVLVTFTKFEELQPVEEFSTPLSSPAHFYDAKSKESEGSSSWISWMKGSRGGQSS 714
Query: 563 DSDSHIHSHRYKDEVDPFIIPSDYKWVDANERKRRMKAKRAKIKKNKKQTVAKGRDGA-H 621
DSD SHRYKDEVDPF IP+DYKWVDANE+KRRMKAK+A+ KK+KKQ AKG DG H
Sbjct: 715 DSD----SHRYKDEVDPFSIPADYKWVDANEKKRRMKAKKARSKKHKKQAAAKGGDGVQH 882
Query: 622 QGSDDFGE 629
Q ++D E
Sbjct: 883 QRTEDVEE 906
>TC228215 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(26%)
Length = 1024
Score = 320 bits (820), Expect = 1e-87
Identities = 162/194 (83%), Positives = 172/194 (88%)
Frame = +2
Query: 436 NESKSESEFKKGVRPVLWLTQDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPPGTF 495
NESK+ESE+KKG+RPVLWLT DFPL+TDELLPLLDIL NKVKAIRRLRELLTTKLP GTF
Sbjct: 5 NESKNESEYKKGLRPVLWLTPDFPLRTDELLPLLDILXNKVKAIRRLRELLTTKLPLGTF 184
Query: 496 PVKVAIPIVPTIRVIVTFTKFEELQTPEEFSTPLSSPVSFQDAKYKESEGSTSWVSWMKG 555
PVKVAIPIVPTIRV+VTFTKFEELQ EEFSTPLSSP FQDAK KESEGSTSW+SWMKG
Sbjct: 185 PVKVAIPIVPTIRVLVTFTKFEELQPAEEFSTPLSSPAYFQDAKSKESEGSTSWISWMKG 364
Query: 556 SRGMPSSDSDSHIHSHRYKDEVDPFIIPSDYKWVDANERKRRMKAKRAKIKKNKKQTVAK 615
SRG SSDSD SH++KDE+DPF IPSDYKWVDANERKRRMKAKRAK KK+KKQTVAK
Sbjct: 365 SRGTQSSDSD----SHKFKDEMDPFSIPSDYKWVDANERKRRMKAKRAKSKKHKKQTVAK 532
Query: 616 GRDGAHQGSDDFGE 629
G DG GSDD E
Sbjct: 533 GGDGMQLGSDDVEE 574
>TC228213 homologue to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like,
partial (12%)
Length = 530
Score = 219 bits (558), Expect = 3e-57
Identities = 121/181 (66%), Positives = 134/181 (73%), Gaps = 15/181 (8%)
Frame = +3
Query: 335 EERVQLDSALRMGNSDGVCQDEEPGAGGGGFDGRGNLYENCEVNGVVKEKKGWFGWNKN- 393
EER+QLDSALRMGNSD +CQDEEPG GGFDG +EN G VKEKK WFGWNK
Sbjct: 3 EERMQLDSALRMGNSDAICQDEEPG---GGFDG----HENGSNGGGVKEKKVWFGWNKKN 161
Query: 394 ------------PNQRSSDQQKLQP--EFPNDDHGEMKSKKGKDQNLKKKKKKGASNESK 439
+ S DQQK QP EF +D E +KKGKD+N+++KKKKG NESK
Sbjct: 162 MKGGDEPEDLKTTKKFSGDQQKPQPQSEFVKEDPAE--TKKGKDKNIRRKKKKGGINESK 335
Query: 440 SESEFKKGVRPVLWLTQDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPPGTFPVKV 499
+ESEFKKG+RPVLWLT DFPLKTDELLPLLDILANKVKAIRRLRELLTTKLP GTFPV
Sbjct: 336 NESEFKKGLRPVLWLTPDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPLGTFPVNA 515
Query: 500 A 500
+
Sbjct: 516 S 518
>TC228626
Length = 812
Score = 193 bits (490), Expect = 2e-49
Identities = 108/222 (48%), Positives = 143/222 (63%), Gaps = 1/222 (0%)
Frame = +2
Query: 389 GWNKNPNQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLKKKKKKGASNESKSESEFKKGV 448
G + + NQ + ++ D+ K K N + ++ N E+E+KKG+
Sbjct: 44 GDSPSRNQSKPGRHSVEIAVKGDESRRRKDAKASSANPDSRSRQKDGNR---ENEYKKGL 214
Query: 449 RPVLWLTQDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPPGTFPVKVAIPIVPTIR 508
RP+LWL+ FPLKT+ELLPLLDI+A+KVKAIRRLRELLTTKLP GTFPVKVAIP+VPTIR
Sbjct: 215 RPILWLSPYFPLKTEELLPLLDIVASKVKAIRRLRELLTTKLPMGTFPVKVAIPVVPTIR 394
Query: 509 VIVTFTKFEELQTPEEFSTPLSSP-VSFQDAKYKESEGSTSWVSWMKGSRGMPSSDSDSH 567
V+VTFTKFEEL+ +EF+TP SSP + Q++ ++SW W+K +S S
Sbjct: 395 VLVTFTKFEELEPVDEFATPPSSPSAAEQESPAAPHFSASSWFQWIKAPYRSSTSAPGS- 571
Query: 568 IHSHRYKDEVDPFIIPSDYKWVDANERKRRMKAKRAKIKKNK 609
S R ++ DPF IPSDY WV A +K++M+ K K KK K
Sbjct: 572 --SSRIENIQDPFAIPSDYTWVTAEAKKKKMQEKN-KSKKGK 688
>TC222659 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(16%)
Length = 313
Score = 185 bits (470), Expect = 5e-47
Identities = 85/101 (84%), Positives = 96/101 (94%)
Frame = +1
Query: 63 RDVPGRETPLHLTVRLRDPIAAEILMSAGADWSLQNEQGWSSLQEAVCNREESIALVIAR 122
RDVPGRETPLHL VRLRDP++AEILM+AGADWSLQNE G S+LQEAVC REE+IA++IAR
Sbjct: 7 RDVPGRETPLHLAVRLRDPVSAEILMAAGADWSLQNEHGCSALQEAVCTREEAIAMIIAR 186
Query: 123 YYQPLAWSKWCRRLPRVIGSASRIRDFYMEISFHFESSVIP 163
+YQPLAW+KWCRRLPR++ SASRIRDFYMEISFHFESSVIP
Sbjct: 187 HYQPLAWAKWCRRLPRIVASASRIRDFYMEISFHFESSVIP 309
>TC210364 similar to UP|O80709 (O80709) F8K4.24 protein (Fragment), partial
(14%)
Length = 812
Score = 167 bits (422), Expect = 2e-41
Identities = 87/192 (45%), Positives = 121/192 (62%), Gaps = 10/192 (5%)
Frame = +3
Query: 428 KKKKKGASNESKSESEFKKGVRPVLWLTQDFPLKTDELLPLLDILANKVKAIRRLRELLT 487
++ + + E E+ + +RP +WLT+ FPLKT+ELLPLLDILANKVKA+RRLRELLT
Sbjct: 105 RRSPQSVTMPQTKEKEYVRSLRPSVWLTEQFPLKTEELLPLLDILANKVKAVRRLRELLT 284
Query: 488 TKLPPGTFPVKVAIPIVPTIRVIVTFTKFEELQTPEEFSTPLSSPVSF----------QD 537
T PPGTFPVKVAIP+VPT+RV++TFTKF ELQ E+F TP SSP Q
Sbjct: 285 TTFPPGTFPVKVAIPVVPTVRVVITFTKFVELQPLEQFYTPFSSPRHLLLSASRGGDEQQ 464
Query: 538 AKYKESEGSTSWVSWMKGSRGMPSSDSDSHIHSHRYKDEVDPFIIPSDYKWVDANERKRR 597
+K + S+S +W++ + + + + S DPF IP+ Y W +++ R+
Sbjct: 465 SKAENRCSSSSSSTWLRRNNSVSNKQRCMALDS-------DPFAIPAGYTWTSVDDKSRK 623
Query: 598 MKAKRAKIKKNK 609
MK K ++K+K
Sbjct: 624 MK-KSKSVRKSK 656
>BI468997
Length = 359
Score = 157 bits (397), Expect = 1e-38
Identities = 80/107 (74%), Positives = 87/107 (80%), Gaps = 1/107 (0%)
Frame = +2
Query: 524 EFSTPLSSPVSFQDAKYKESEGSTSWVSWMKGSRGMPSSDSDSHIHSHRYKDEVDPFIIP 583
EFSTPLSSP F DAK KESEGS SW+SWMKGSRG SSDSDSH RYKDEVDPF IP
Sbjct: 2 EFSTPLSSPAHFYDAKSKESEGSGSWISWMKGSRGGQSSDSDSH----RYKDEVDPFSIP 169
Query: 584 SDYKWVDANERKRRMKAKRAKIKKNKKQTVAKGRDGA-HQGSDDFGE 629
+DYKWVDANE+KRRMKAK+AK KK+KKQT AKG DG HQ ++D E
Sbjct: 170 ADYKWVDANEKKRRMKAKKAKSKKHKKQTAAKGGDGVQHQRTEDVEE 310
>TC222091 similar to UP|O80709 (O80709) F8K4.24 protein (Fragment), partial
(25%)
Length = 653
Score = 139 bits (351), Expect = 3e-33
Identities = 77/147 (52%), Positives = 103/147 (69%), Gaps = 4/147 (2%)
Frame = +1
Query: 188 TLAGFDGFRIQRSDQSFLFLGEGYASEDGNVSLPRGSLIALAHKEKEITNALEGAGTQPT 247
+LAGFDG +IQR+DQSFLFLG+G + D +P GSL+ L +++I +A E AG
Sbjct: 4 SLAGFDGLKIQRADQSFLFLGDGDHTHD----VPSGSLLVLNRDDRKIFDAFENAGGPMN 171
Query: 248 ESEIANEVSMMFQTNMYRPGIDVTQAELVPNLNWRRQEKTEVVGDWKAKVYDMLNVMVSV 307
ES++A S QT++YRPG+DVT+AELV +NWRRQEKTE VG+WKAKVY+M NV+ S
Sbjct: 172 ESDLAGFCS---QTSVYRPGMDVTKAELVGRMNWRRQEKTESVGEWKAKVYEMHNVVFSF 342
Query: 308 KSRRVPGALND----EEVFANGEDYDD 330
+SR+V G+ +D E+V D DD
Sbjct: 343 RSRKVAGSESDVAGSEQVLPLELDEDD 423
>TC226969 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(6%)
Length = 739
Score = 116 bits (291), Expect = 3e-26
Identities = 60/89 (67%), Positives = 66/89 (73%), Gaps = 1/89 (1%)
Frame = +3
Query: 542 ESEGSTSWVSWMKGSRGMPSSDSDSHIHSHRYKDEVDPFIIPSDYKWVDANERKRRMKAK 601
ESEG SW WMKGSR SDSDS RYK EVDPF IP+DYKWVDANE+KRRMKAK
Sbjct: 12 ESEGXGSWXXWMKGSRXXQCSDSDSX----RYKXEVDPFSIPADYKWVDANEKKRRMKAK 179
Query: 602 RAKIKKNKKQTVAKGRDGA-HQGSDDFGE 629
+AK KK+KKQT AKG DG HQ ++D E
Sbjct: 180 KAKSKKHKKQTAAKGGDGVQHQRTEDVEE 266
>BE474220
Length = 256
Score = 111 bits (278), Expect = 8e-25
Identities = 61/85 (71%), Positives = 67/85 (78%)
Frame = +2
Query: 460 LKTDELLPLLDILANKVKAIRRLRELLTTKLPPGTFPVKVAIPIVPTIRVIVTFTKFEEL 519
L TD+LL LLDIL NKVKAI RL+ELLTTKLP GT PVKV IPI+PTIRV+VT TKFEEL
Sbjct: 2 LDTDDLLSLLDILPNKVKAIIRLKELLTTKLPLGTPPVKVVIPILPTIRVLVTITKFEEL 181
Query: 520 QTPEEFSTPLSSPVSFQDAKYKESE 544
EE STPLSSP D+K ES+
Sbjct: 182 *PEEECSTPLSSPSHVYDSKSNESD 256
>AW186308
Length = 195
Score = 71.6 bits (174), Expect = 1e-12
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 11/64 (17%)
Frame = +2
Query: 318 DEEVFA-----------NGEDYDDVLTAEERVQLDSALRMGNSDGVCQDEEPGAGGGGFD 366
DEE+FA N ++YDDVLTAEE++QLDSALRMGNSDG+CQD EP GFD
Sbjct: 2 DEELFAVDDGESMVNRENNDEYDDVLTAEEKMQLDSALRMGNSDGICQDGEP-----GFD 166
Query: 367 GRGN 370
G N
Sbjct: 167 GHEN 178
>TC228214 similar to UP|Q6KA74 (Q6KA74) Ankyrin repeat protein-like, partial
(3%)
Length = 640
Score = 66.2 bits (160), Expect = 4e-11
Identities = 34/45 (75%), Positives = 36/45 (79%)
Frame = +1
Query: 585 DYKWVDANERKRRMKAKRAKIKKNKKQTVAKGRDGAHQGSDDFGE 629
DYKWVDANERKRRMKAKRAK K+KKQT AKG DG GS+D E
Sbjct: 1 DYKWVDANERKRRMKAKRAKNMKHKKQT-AKGGDGVQLGSEDVEE 132
>BU765758
Length = 420
Score = 63.5 bits (153), Expect = 3e-10
Identities = 31/48 (64%), Positives = 37/48 (76%)
Frame = -1
Query: 496 PVKVAIPIVPTIRVIVTFTKFEELQTPEEFSTPLSSPVSFQDAKYKES 543
PVKVAIP+VPT+RV+VTFTKF ELQ E+F TPLSSP +A +S
Sbjct: 420 PVKVAIPVVPTVRVVVTFTKFVELQPVEKFYTPLSSPTHLLNADDDDS 277
>AW100029
Length = 317
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +3
Query: 7 YKHSPAHVAVLNRDHASLRRLISTIPTLPKPGEVTTESESLSAEIQADQISSVID 61
Y HSP H AV DH +L R+ S++P LP P + TES+SL+ E ADQI +D
Sbjct: 60 YGHSPVHYAVALGDHTTLSRITSSLPRLPDPSLIQTESDSLAQEKIADQIFLRLD 224
>TC228625
Length = 742
Score = 48.5 bits (114), Expect = 9e-06
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 526 STPLSSPVSF-QDAKYKESEGSTSWVSWMKGSRGMPSSDSDSHIHSHRYKDEVDPFIIPS 584
+ P SSP Q++ ++SW W+K +S S S R ++ DPF IPS
Sbjct: 20 AXPPSSPXXAEQESPAVPHFSASSWFQWIKAPYRSSTSAXGS---SSRIENIQDPFAIPS 190
Query: 585 DYKWVDANERKRRMKAKRAKIKKNK 609
DY WV A +K++M+ K K KK K
Sbjct: 191 DYTWVTAEAKKKKMQEKN-KSKKGK 262
>CF922367
Length = 463
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 6/71 (8%)
Frame = -3
Query: 392 KNPNQRSSDQQKLQPEFPNDDHGEMKSKKGK--DQNLKKKKKKGASNESKS----ESEFK 445
+ PNQR + +K + E PN GE K K+ K +Q + ++KKKG K+ E +
Sbjct: 239 ETPNQRVGESKKKRKEIPNQRVGESKRKRKKIPNQRMGERKKKGRKEGKKAPDQGSKENR 60
Query: 446 KGVRPVLWLTQ 456
+ V+ LW Q
Sbjct: 59 RNVQRGLWTGQ 27
Score = 38.9 bits (89), Expect = 0.007
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 4/57 (7%)
Frame = -3
Query: 394 PNQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLK----KKKKKGASNESKSESEFKK 446
PNQR + +K + E PN GE K K+ + N + KKK+K N+ ES+ K+
Sbjct: 323 PNQRMGESKKKRKEIPNQRMGESKKKRKETPNQRVGESKKKRKEIPNQRVGESKRKR 153
>AW349690
Length = 563
Score = 37.7 bits (86), Expect = 0.016
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3
Query: 570 SHRYKDEVDPFIIPSDYKWVDANERKRRMKAKRAKIKKNK 609
S R ++ PF IPSDY WV A +K++M+ K K KK K
Sbjct: 543 SSRIENIEXPFAIPSDYTWVTAEAKKKKMQEKN-KSKKGK 427
>CF920966
Length = 614
Score = 37.7 bits (86), Expect = 0.016
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -3
Query: 381 VKEKKGWFGWNKNPNQRSSDQQKLQPEFPNDDHGEMKSKKGK--DQNLKKKKKKGASNES 438
+KEK G + PNQR +++K + E PN GE K K+ K +Q + + KK+G S
Sbjct: 351 IKEKAKKEG-KEIPNQRVGEREKKRKEIPNQRVGERKKKRKKIPNQRMGESKKEGNSWSK 175
Query: 439 KSE 441
K E
Sbjct: 174 KPE 166
>TC214538
Length = 348
Score = 34.3 bits (77), Expect = 0.17
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = -3
Query: 392 KNPNQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLKKKKKKGASNESK 439
K PNQR + ++ + E PN GE K K+ + N + +KK E K
Sbjct: 232 KIPNQRVGESKRKRKEIPNQKVGESKKKRKEIPNQRMGEKKKEKKERK 89
Score = 32.0 bits (71), Expect = 0.86
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 394 PNQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLKKKKKK 432
PNQ+ + +K + E PN GE K +K + + L K +KK
Sbjct: 181 PNQKVGESKKKRKEIPNQRMGEKKKEKKERKLLIKDRKK 65
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/75 (30%), Positives = 34/75 (44%)
Frame = -2
Query: 382 KEKKGWFGWNKNPNQRSSDQQKLQPEFPNDDHGEMKSKKGKDQNLKKKKKKGASNESKSE 441
KEKKG N +S +QK + G +SK G+ KKK+K+G +
Sbjct: 200 KEKKG------NSQSKSGRKQK-------EKKGNSQSKNGR----KKKRKEGKKAPDQGS 72
Query: 442 SEFKKGVRPVLWLTQ 456
E ++ V+ LW Q
Sbjct: 71 KENRRNVQRGLWTGQ 27
>TC231026 similar to UP|Q9SQK3 (Q9SQK3) Ankyrin repeat protein EMB506,
partial (33%)
Length = 750
Score = 34.3 bits (77), Expect = 0.17
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 71 PLHLTVRLRDPIAAEILMSAGADWSLQNEQGWSSLQEAVCNREESIALVI 120
PLH V++ + ++L+ AD ++++ +GW+ L A+ +R IA ++
Sbjct: 54 PLHYAVQVGAKMTVKLLIKYKADVNVEDNEGWTPLHIAIQSRNRDIAKIL 203
Score = 33.9 bits (76), Expect = 0.23
Identities = 15/41 (36%), Positives = 28/41 (67%)
Frame = +3
Query: 70 TPLHLTVRLRDPIAAEILMSAGADWSLQNEQGWSSLQEAVC 110
TPLH+ ++ R+ A+IL+ GAD + +N+ G ++L ++C
Sbjct: 150 TPLHIAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLC 272
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,863,870
Number of Sequences: 63676
Number of extensions: 357385
Number of successful extensions: 5529
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3084
length of query: 631
length of database: 12,639,632
effective HSP length: 103
effective length of query: 528
effective length of database: 6,081,004
effective search space: 3210770112
effective search space used: 3210770112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Medicago: description of AC135461.4