TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135461.14 - phase: 0 /pseudo
         (1361 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230193 similar to UP|Q9FRS5 (Q9FRS5) F22O13.8, partial (6%)         168  1e-41
TC230194 similar to UP|Q9FRS5 (Q9FRS5) F22O13.8, partial (3%)         127  3e-29
BG154884                                                               31  3.2
TC208523 similar to UP|TOB1_MOUSE (Q61471) Tob1 protein (Transdu...    30  5.5
BE801462                                                               30  5.5
TC222479                                                               30  9.4

>TC230193 similar to UP|Q9FRS5 (Q9FRS5) F22O13.8, partial (6%)
          Length = 630

 Score =  168 bits (426), Expect = 1e-41
 Identities = 93/148 (62%), Positives = 107/148 (71%), Gaps = 1/148 (0%)
 Frame = +2

Query: 1215 ETYSTTFKWKQLF**VNGKLTRQASSPVDCQLSFT*IPVTRKRRGKTIKRGARYGLGGVS 1274
            ET+STTFKW+ LF**VNGKLT QASS VDCQ S T*IP TRKRRGK IKRGARYGLGG+ 
Sbjct: 11   ETHSTTFKWQ*LF**VNGKLT*QASSAVDCQFS*T*IPATRKRRGKAIKRGARYGLGGLP 190

Query: 1275 QIAGMGRSSESTDW*V-CA*SKARSVKGRRRTT*SRNLAAFN*AEKSFHKAAMHQPCTFA 1333
            +I GMGRS+EST W*V  A*++AR+ K        +     N* +++FH   M+QPCT+ 
Sbjct: 191  EIVGMGRSAESTTW*VYYA*TEARNAKCNAPKCIRKLQHLAN*TKQTFHDTEMYQPCTYV 370

Query: 1334 DT*KPENKNWGLYSLRGMCPGGKVGRLE 1361
            DT KP NK W  Y L GMCPG  VG LE
Sbjct: 371  DTSKPRNKIWMQYCLWGMCPGD*VGGLE 454


>TC230194 similar to UP|Q9FRS5 (Q9FRS5) F22O13.8, partial (3%)
          Length = 858

 Score =  127 bits (319), Expect = 3e-29
 Identities = 73/126 (57%), Positives = 85/126 (66%), Gaps = 1/126 (0%)
 Frame = +3

Query: 1237 QASSPVDCQLSFT*IPVTRKRRGKTIKRGARYGLGGVSQIAGMGRSSESTDW*V-CA*SK 1295
            QASS VDCQLS T*IPVTRK RGK I+RGARYGLGG+ +I GMGRS+EST W*V  A ++
Sbjct: 6    QASSKVDCQLS*T*IPVTRK*RGKAIERGARYGLGGLPEIVGMGRSAESTTW*VYYARTE 185

Query: 1296 ARSVKGRRRTT*SRNLAAFN*AEKSFHKAAMHQPCTFADT*KPENKNWGLYSLRGMCPGG 1355
            AR+          +     N* +++FH   MHQPC + DT*K  NK W  Y L GM PG 
Sbjct: 186  ARNANCDAPKCIRKLQHLAN*TKQAFHDTEMHQPCAYVDT*KSRNKIWMQYCLWGMRPGD 365

Query: 1356 KVGRLE 1361
             VGRLE
Sbjct: 366  *VGRLE 383


>BG154884 
          Length = 475

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 19/77 (24%), Positives = 39/77 (49%)
 Frame = +3

Query: 35  LMTNCILSLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEM 94
           +  + I S    LLE +    E  + LEEE+  ++E  +R+ +E+ L  ++++  +   +
Sbjct: 234 MAASIISSCSRNLLESKRHHEEELKLLEEETARRLEEAIRKNVEEKLNTEEVKLEIERRV 413

Query: 95  AAFKEEWEAALDDLETE 111
           A   E  +   DD+E +
Sbjct: 414 A---EGVKKLFDDVEAQ 455


>TC208523 similar to UP|TOB1_MOUSE (Q61471) Tob1 protein (Transducer of
           erbB-2 1), partial (5%)
          Length = 665

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 28/105 (26%), Positives = 41/105 (38%), Gaps = 14/105 (13%)
 Frame = -2

Query: 52  SKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMA------AFKEEWEAAL 105
           S  AEA ETL ++ L K E+   +E        D +TA A   A      A +    AA+
Sbjct: 322 SAKAEAAETLTDQKLGKTEAPATEEGRTPAANSDTQTAQAKTAAETTTVLATEASLAAAV 143

Query: 106 D--------DLETESSHLLEQLDGAGIELPSLYKLIEREAPDRCC 142
                    ++E E        +     L S ++L  R + DR C
Sbjct: 142 ALVVAEAEVEVEVEKPEKCLAFESREKSLKSAWRLHRRGSADRAC 8


>BE801462 
          Length = 424

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +1

Query: 34  ILMTNCILSLISELLE-VESKAAEAQETLEEESLAKVESEVRQELE-----QTLQGDDLE 87
           I    C L  +++LL  V  +  EAQ   ++  L K+E + +Q+LE     QT Q D + 
Sbjct: 187 ITRRECELIHVNDLLSRVIKERDEAQAKCQKLMLEKLELQQKQQLEQHQFVQTHQRDTIS 366

Query: 88  TAVADEMAAFKEEWEAALD 106
            +  ++   F E+  A+ D
Sbjct: 367 QSEEEQQEGFSEKHSASSD 423


>TC222479 
          Length = 769

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
 Frame = -3

Query: 282 NEKELDLSEEQRR---------QFKKLSPIQLSIYGTIFLRIPNSSAVCSSAFSISL 329
           N +++D   + RR         +FK +S    SIYGT+FL  P+ S +C+ A S  L
Sbjct: 533 NTEKIDRKFDMRRVAIHNDL*IKFKSIS----SIYGTLFLCFPHISRLCAMAGSTVL 375


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.362    0.161    0.621 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,654,658
Number of Sequences: 63676
Number of extensions: 868688
Number of successful extensions: 8287
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4464
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 3676
Number of HSP's gapped (non-prelim): 5024
length of query: 1361
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1252
effective length of database: 5,698,948
effective search space: 7135082896
effective search space used: 7135082896
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 65 (29.6 bits)