TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135416.5 + phase: 0 /pseudo
         (653 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ...    93  4e-19
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin...    92  6e-19
TC222094                                                               61  8e-12
CF922341                                                               35  0.11

>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
          Length = 1144

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
 Frame = -3

Query: 2   NQFSGSPTEDPNLHISSFLRLSGTIK---ENQEALRLHLFPFSLRDRASAWFHSLEVGSI 58
           N F G P EDP  H+++++ +  TI+      +A+RL L  FSL   A  W HS +  S+
Sbjct: 788 NFFHGLPNEDPYAHLATYIEICNTIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSL 609

Query: 59  TSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEK 117
            SWD++    L ++FP SKTA+ +  I  F+Q   ESL EA ERF+ +LR  P HG  +
Sbjct: 608 KSWDEVVEKFLKKYFPESKTAEGKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSE 432


>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
           regulator, partial (3%)
          Length = 1374

 Score = 92.4 bits (228), Expect = 6e-19
 Identities = 47/118 (39%), Positives = 64/118 (53%), Gaps = 3/118 (2%)
 Frame = +2

Query: 3   QFSGSPTEDPNLHISSFLRLSGTIKE---NQEALRLHLFPFSLRDRASAWFHSLEVGSIT 59
           +F G   EDP+ H+  F  +  T+K     ++ + L  FP SL   A  W + L   SI 
Sbjct: 551 KFHGLVGEDPHKHLKEFHIVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIF 730

Query: 60  SWDDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEK 117
           +WDD++R  L +FFP S+T  +R  I    Q   ESLYE WERFK+    CPHH + K
Sbjct: 731 NWDDLKRVFLEKFFPASRTTTIRKDISGIRQLSRESLYEYWERFKKSCASCPHHQISK 904


>TC222094 
          Length = 984

 Score = 60.8 bits (146), Expect(2) = 8e-12
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
 Frame = -2

Query: 2   NQFSGSPTEDPNLHISSFLRLSGTIK---ENQEALRLHLFPFSLRDRASAWFHSLEVGSI 58
           N F G PTEDP  H+++++ +  T+K     ++A+ L LF FSL   A  W  S +  ++
Sbjct: 728 NLFYGLPTEDPYAHLATYIDICNTVKIVGVPEDAIHLDLFCFSLAGEARTWLRSFKGNNL 549

Query: 59  TSWDDMRRALLARFFPPSKT 78
            +W++     L ++FP SKT
Sbjct: 548 RTWNEXXEKFLKKYFPESKT 489



 Score = 27.7 bits (60), Expect(2) = 8e-12
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 84  QIMRFNQKDGESLYEAWERFKEMLRLCPHHGLEK 117
           +I  F+Q   ESL EA +RF  +L   P HG  +
Sbjct: 472 EISSFHQHPHESLSEALDRFHGLLWKTPTHGFSE 371


>CF922341 
          Length = 675

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 18/64 (28%), Positives = 32/64 (49%)
 Frame = +1

Query: 9   TEDPNLHISSFLRLSGTIKENQEALRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAL 68
           T  P  H+  + +  G   +++E L +H F  SL   A  W+ +LE   + SW D+  A 
Sbjct: 448 TTCPKNHLKMYCQKMGAYAKDEELL-IHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAF 624

Query: 69  LARF 72
           + ++
Sbjct: 625 VRQY 636


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.365    0.161    0.617 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,442,277
Number of Sequences: 63676
Number of extensions: 468952
Number of successful extensions: 5498
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 3286
Number of HSP's gapped (non-prelim): 2445
length of query: 653
length of database: 12,639,632
effective HSP length: 103
effective length of query: 550
effective length of database: 6,081,004
effective search space: 3344552200
effective search space used: 3344552200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 62 (28.5 bits)