TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135416.15 - phase: 0 /pseudo
         (662 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin...   113  2e-25
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ...   105  8e-23
TC232398                                                               70  1e-20
BQ133845                                                               82  6e-16
TC222094                                                               54  3e-15
TC213161                                                               33  0.31
CF922341                                                               32  0.91
TC209504 similar to UP|MLO8_ARATH (O22757) MLO-like protein 8 (A...    30  3.4
BI787552                                                               30  4.5
TC215574 similar to UP|O04076 (O04076) ACC-oxidase, partial (98%)      30  4.5
TC215576 similar to UP|O04076 (O04076) ACC-oxidase, partial (97%)      29  5.9
TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcr...    29  5.9

>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
           regulator, partial (3%)
          Length = 1374

 Score =  113 bits (283), Expect = 2e-25
 Identities = 58/138 (42%), Positives = 82/138 (59%)
 Frame = +2

Query: 37  QEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFN 96
           ++ + L  FP SL   A+ W + L   SI +WDD++R FL +FFP S+T  +R  I+   
Sbjct: 641 EDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRVFLEKFFPASRTTTIRKDISGIR 820

Query: 97  QKDGEYLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAACGALMNKNH 156
           Q   E LYE WERFK+    CPHH + K L++  FY  LS   +  +DAA+ GAL +   
Sbjct: 821 QLSRESLYEYWERFKKSCASCPHHQISKQLLL*YFYEELSNMKRSMIDAASGGALGDMTP 1000

Query: 157 TEAYSLIEDMAQNHYQWT 174
           TEA +LI+ MA N  Q++
Sbjct: 1001TEARNLIKKMASNSQQFS 1054


>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
          Length = 1144

 Score =  105 bits (261), Expect = 8e-23
 Identities = 67/189 (35%), Positives = 105/189 (55%)
 Frame = -3

Query: 26  SLRLSGAIKENQEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDMRRAFLARFFPPSKT 85
           ++RL+G      +A+RL L  FSL   A+ W HS +  S+ SWD++   FL ++FP SKT
Sbjct: 719 TIRLAGV---PADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVVEKFLKKYFPESKT 549

Query: 86  AKLRDQITRFNQKDGEYLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDA 145
           A+ +  I+ F+Q   E L EA ERF+ +LR  P HG  + + ++ F + L   +K  VDA
Sbjct: 548 AEGKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSEPIQLNIFIDELRPESKQLVDA 369

Query: 146 AACGALMNKNHTEAYSLIEDMAQNHYQWTNERAVTAPTPSKKEAGIYEVSEYNHLAAKVE 205
           +  G +  K   EA  LIE MA +      +R   A  P+KK   + E++  + L A+ +
Sbjct: 368 SVGGKIKMKTPDEAMDLIESMAASDIAILRDR---AHIPTKK--SLLELTSQDTLLAQNK 204

Query: 206 ALTQKFEKL 214
            L+++ E L
Sbjct: 203 LLSKQLETL 177


>TC232398 
          Length = 1054

 Score = 70.5 bits (171), Expect(2) = 1e-20
 Identities = 37/91 (40%), Positives = 55/91 (59%)
 Frame = +1

Query: 535 RLGLGELKLTETTLKLADRSDIQPVGNVEDIPVKIEGIDIPTDFMVLDIDEDNECPIILG 594
           R+G  +++ T  TL+LAD S  +  G VEDI VK+  +    DF+++DI+ED E  +ILG
Sbjct: 175 RIGNQKIEPTRMTLQLADHSITRSFGVVEDILVKVHQLIFLVDFVIMDIEEDAEIRLILG 354

Query: 595 RPFLATAGAIVDVQNGRIIFQVSDELIGFEL 625
            PF+ TA  +VD+  G +   V D+   F L
Sbjct: 355 WPFMVTAKCVVDMGKGNLEMSVEDQKATFNL 447



 Score = 48.1 bits (113), Expect(2) = 1e-20
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +2

Query: 446 IKIPFAEALSRMPLYAKFLKEIFSKKKAIDHNETKALTRENSAIIKKPPTKLRDPG 501
           I IPF E + +MPLY KFLK+I  KK    ++ET  +     A+I+K P K +D G
Sbjct: 8   ITIPFGERIQQMPLYKKFLKDILIKKGKYINSETIVVGEYCRALIQKLPPKFKDLG 175


>BQ133845 
          Length = 389

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 43/98 (43%), Positives = 64/98 (64%), Gaps = 1/98 (1%)
 Frame = +2

Query: 436 KFLNILQKICIKIPFAEALSRMPLYAKFLKEIFSKKKAIDHNETKALTRENSAIIKK-PP 494
           KFL+I +K+ I +PF EAL +MPLYA FLK++ +KK    H++   +    SA+I++  P
Sbjct: 86  KFLDIFKKLEITLPFEEALQQMPLYANFLKDMLTKKNWYIHSDKIVVEGNCSAVIQRILP 265

Query: 495 TKLRDPGSFAIPCMIGSETLNQALCDLGASVSLLPLPL 532
               DPG   +PC IG   + +AL DLGAS++L+PL +
Sbjct: 266 P*HTDPGFVTMPCSIGEVAVGKALIDLGASINLMPLSM 379


>TC222094 
          Length = 984

 Score = 53.5 bits (127), Expect(2) = 3e-15
 Identities = 33/104 (31%), Positives = 56/104 (53%)
 Frame = -3

Query: 91  QITRFNQKDGEYLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAACGA 150
           +I+ F+Q   E L EA +RF  +L   P HG  + + ++ F +G+   +K  +DA+A G 
Sbjct: 472 EISSFHQHPHESLSEALDRFHGLLWKTPTHGFSEPVQLNIFIDGMQPHSKQLLDASAGGK 293

Query: 151 LMNKNHTEAYSLIEDMAQNHYQWTNERAVTAPTPSKKEAGIYEV 194
           +  K   EA  LIE+MA N Y    ++    P+P ++   + E+
Sbjct: 292 IKLKTPEEAIELIENMAANDYVILRDQ---EPSPQEESTRLEEL 170



 Score = 46.6 bits (109), Expect(2) = 3e-15
 Identities = 19/49 (38%), Positives = 30/49 (60%)
 Frame = -2

Query: 37  QEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDMRRAFLARFFPPSKT 85
           ++A+ L LF FSL   AR W  S +  ++ +W++    FL ++FP SKT
Sbjct: 635 EDAIHLDLFCFSLAGEARTWLRSFKGNNLRTWNEXXEKFLKKYFPESKT 489


>TC213161 
          Length = 502

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 4/63 (6%)
 Frame = +1

Query: 118 PHHGLEKWLIVHTFYNGLSYTTKMSVDAAACGALMNKNH----TEAYSLIEDMAQNHYQW 173
           PH+ L  WL V   +N   ++T +S    ACG+  N  +     E   +++D+      W
Sbjct: 109 PHNNLSSWLDVSEDHNQKQFST-LSPTITACGSFSNNGNGRFLREESGVVDDVISPDLAW 285

Query: 174 TNE 176
            NE
Sbjct: 286 VNE 294


>CF922341 
          Length = 675

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 16/49 (32%), Positives = 28/49 (56%)
 Frame = +1

Query: 31  GAIKENQEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDMRRAFLARF 79
           GA  +++E + +H F  SL   A  W+ +LE   + SW D+  AF+ ++
Sbjct: 493 GAYAKDEELL-IHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQY 636


>TC209504 similar to UP|MLO8_ARATH (O22757) MLO-like protein 8 (AtMlo8),
           partial (24%)
          Length = 735

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 457 MPLYAKFLKEIFSKKKAI-DHNETKALTRENSAIIKKPPTKLRDPGSFAIPCMIGSET 513
           +PLYA   + +   KK+I D   +KAL + + A+ KK   KL   G+  +  M GS T
Sbjct: 308 LPLYALVTQMVSRMKKSIFDEQTSKALKKWHMAVKKKQGVKL---GNSKVRAMDGSST 472


>BI787552 
          Length = 421

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
 Frame = +2

Query: 241 CQLGSAANIEQLNYAQFNQGTRPNQKFYKNPQGSYGQVAPPGY-TNNQRVAKKSSLE 296
           C +    N++ LNY  + Q   P  K +K  +     V PP Y T + R+A + + E
Sbjct: 170 CCIPVQENLDDLNYLHWRQHVEPVIKLHKLQRFVVNLVVPPRYFTEDDRIADRVNPE 340


>TC215574 similar to UP|O04076 (O04076) ACC-oxidase, partial (98%)
          Length = 1169

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 70  DMRRAFLARFFPPSKTAKLRDQITRFNQKDGEYLYEAWERFKEMLRL-CPHHGLEKWLIV 128
           D    F  R  P S  +++ D    +     E+  +  +  +E+L L C + GLEK  + 
Sbjct: 282 DWESTFFLRHLPTSNISEIPDLSQEYRDAMKEFAQKLEKLAEELLDLLCENLGLEKGYLK 461

Query: 129 HTFY--NGLSYTTKMS 142
           + FY   G ++ TK++
Sbjct: 462 NAFYGSRGPNFGTKVA 509


>TC215576 similar to UP|O04076 (O04076) ACC-oxidase, partial (97%)
          Length = 1151

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 70  DMRRAFLARFFPPSKTAKLRDQITRFNQKDGEYLYEAWERFKEMLRL-CPHHGLEKWLIV 128
           D    F  R  P S  +++ D    +     E+  +  +  +E+L L C + GLEK  + 
Sbjct: 233 DWESTFFLRHLPTSNISEIPDLSQEYRDAMKEFAKKLEKLAEELLDLLCENLGLEKGYLK 412

Query: 129 HTFY--NGLSYTTKMS 142
           + FY   G ++ TK++
Sbjct: 413 NAFYGSKGPNFGTKVA 460


>TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcription
           factor (CCA1); supported by cDNA: gi:1777442) (MYB
           transcription factor), partial (11%)
          Length = 901

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 36  NQEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDM----RRAFLARFFPPSKTAKLRDQ 91
           N++  +LH FPF L+       H     S+  W  +    +  F++ FF P+   +LR +
Sbjct: 360 NKQITKLHTFPFFLK-------H*NPQNSVQKWTSLATKQKHCFVSLFFYPTLLFQLRIE 202

Query: 92  ITRFNQKD 99
            T    +D
Sbjct: 201 DTLLRSRD 178


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,891,834
Number of Sequences: 63676
Number of extensions: 364925
Number of successful extensions: 1781
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of query: 662
length of database: 12,639,632
effective HSP length: 103
effective length of query: 559
effective length of database: 6,081,004
effective search space: 3399281236
effective search space used: 3399281236
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)