Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135320.16 + phase: 0 
         (153 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3...   212  5e-56
TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor...    89  6e-19
TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor...    88  2e-18
TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred...    86  5e-18
AI856628 similar to GP|21592364|gb| ferredoxin {Arabidopsis thal...    84  3e-17
TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred...    84  3e-17
CA852999                                                               84  3e-17
TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloropla...    78  2e-15
TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,...    78  2e-15
TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop...    77  3e-15
TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,...    74  4e-14
TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), ...    71  2e-13
TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop...    71  2e-13
TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%)       67  4e-12
TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%)       60  3e-10
CD394083                                                               60  5e-10
CD393864                                                               57  3e-09
TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,...    52  1e-07
AW460079                                                               40  3e-04
TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for...    40  4e-04

>TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3485W),
           partial (68%)
          Length = 677

 Score =  212 bits (540), Expect = 5e-56
 Identities = 115/158 (72%), Positives = 129/158 (80%), Gaps = 5/158 (3%)
 Frame = +1

Query: 1   MATLQFT--PLTLFRQK--HPTTKLPYPSQLNT-RPRLGSGSHPSSPSLTFTVRSSYKVV 55
           MA+LQ T  P TL RQ+  HPT K    SQLN  RPR           L  +VRS YKVV
Sbjct: 67  MASLQLTTTPFTLLRQQRQHPTKKKSTASQLNPPRPR----------PLRVSVRS-YKVV 213

Query: 56  IEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDD 115
           IEH+G++T++EVEPDETILSKALDSGL VPHDCKLGVCMTCPARLISG+VDQSDGMLSDD
Sbjct: 214 IEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDD 393

Query: 116 VVERGYALLCASYPRSDCHIRVIPEDELLSMQLATAND 153
           VVERGYALLCA+YP+SDCHI++IPEDELLS+QLATAND
Sbjct: 394 VVERGYALLCAAYPQSDCHIKIIPEDELLSLQLATAND 507


>TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
           precursor (Fd III), partial (66%)
          Length = 1112

 Score = 89.4 bits (220), Expect = 6e-19
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 11/163 (6%)
 Frame = +1

Query: 1   MATLQFTPLTL-FRQKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV- 54
           MATL     TL    K+P+   T +  PS L +   +  S    S+ S   T  +SYKV 
Sbjct: 511 MATLSTNHCTLQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKVK 690

Query: 55  VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-MLS 113
           +I  +G   + E   D  IL  A  +G+++P+ C+ G C TC  +++SG+VDQSDG  L 
Sbjct: 691 LIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLD 870

Query: 114 DDVVERGYALLCASYPRSDCHIRVIPEDEL----LSMQLATAN 152
           D+ ++ G+ L C SYP +DC I    E +L    L+++L T N
Sbjct: 871 DNQLKEGFVLTCVSYPTADCVIETHKEGDLY*AMLALKLGTGN 999


>TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
           precursor (Fd III), partial (72%)
          Length = 764

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
 Frame = +1

Query: 1   MATLQFTPLTLFR--QKHPTT---KLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV 54
           ++T++ +P  +F+   K+P+T    +  PS   +   +  S    SS S   T  +SYKV
Sbjct: 100 LSTVKVSPHCMFQTASKNPSTVATTMKCPSSFGSVKSISRSFGLKSSSSFRVTAMASYKV 279

Query: 55  -VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-ML 112
            +I  +G   + E   D  IL  A  +G+++P+ C+ G C TC  ++++G+VDQSDG  L
Sbjct: 280 KLIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVAGSVDQSDGSFL 459

Query: 113 SDDVVERGYALLCASYPRSDCHIRVIPEDELLSMQLA 149
            D+ ++ G+ L C SYP +DC I    E +L    LA
Sbjct: 460 DDNQLKEGFVLTCVSYPTADCVIETHKEGDLY*AMLA 570


>TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
           precursor, partial (84%)
          Length = 924

 Score = 86.3 bits (212), Expect = 5e-18
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
 Frame = +1

Query: 24  PSQLNTRPRLGSGSHPSSPSLTFTVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGL 82
           PS L +   +       S S   +  + YKV +I  +G+  + E   D  IL  A ++G+
Sbjct: 298 PSSLRSVKNVSKVFGLKSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDTYILDSAENAGV 477

Query: 83  DVPHDCKLGVCMTCPARLISGTVDQSD-GMLSDDVVERGYALLCASYPRSDCHIRVIPED 141
           ++P+ C+ G C TC  +++SG+VDQ+D   L D  +E+GY L C SYP+SDC I    E+
Sbjct: 478 ELPYSCRAGACSTCAGQVVSGSVDQADQSFLDDHQIEKGYLLTCVSYPKSDCVIHTHKEE 657

Query: 142 ELL 144
           +L+
Sbjct: 658 DLV 666


>AI856628 similar to GP|21592364|gb| ferredoxin {Arabidopsis thaliana},
           partial (23%)
          Length = 327

 Score = 84.0 bits (206), Expect = 3e-17
 Identities = 54/92 (58%), Positives = 63/92 (67%), Gaps = 5/92 (5%)
 Frame = +3

Query: 1   MATLQFT--PLTLFRQK--HPTTKLPYPSQLNT-RPRLGSGSHPSSPSLTFTVRSSYKVV 55
           MA+LQ T  P TL RQ+  HPT K    SQLN  RPR           L  +VRS YKVV
Sbjct: 33  MASLQLTTTPFTLLRQQRQHPTKKKSTASQLNPPRPR----------PLRVSVRS-YKVV 179

Query: 56  IEHEGKTTQLEVEPDETILSKALDSGLDVPHD 87
           IEH+G++T++EVEPDETILSKALDSGL VPH+
Sbjct: 180 IEHDGESTEVEVEPDETILSKALDSGLSVPHE 275


>TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
           precursor, partial (84%)
          Length = 853

 Score = 84.0 bits (206), Expect = 3e-17
 Identities = 43/123 (34%), Positives = 69/123 (55%), Gaps = 2/123 (1%)
 Frame = +2

Query: 24  PSQLNTRPRLGSGSHPSSPSLTFTVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGL 82
           PS L +   +       S S   +  + YKV +I  +G+  + E   D  IL  A ++G+
Sbjct: 227 PSSLRSVKNVSKVFGLKSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDTYILDAAENAGV 406

Query: 83  DVPHDCKLGVCMTCPARLISGTVDQSD-GMLSDDVVERGYALLCASYPRSDCHIRVIPED 141
           ++P+ C+ G C TC   ++SG+VDQ+D   L D  +++GY L C SYP+SDC I    E+
Sbjct: 407 ELPYSCRAGACSTCAGHVVSGSVDQADQSFLDDHQIKKGYLLTCVSYPKSDCVIHTHKEE 586

Query: 142 ELL 144
           +L+
Sbjct: 587 DLV 595


>CA852999 
          Length = 545

 Score = 84.0 bits (206), Expect = 3e-17
 Identities = 50/143 (34%), Positives = 81/143 (55%), Gaps = 8/143 (5%)
 Frame = +2

Query: 1   MATLQFTPLTLFR--QKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV 54
           ++T++ +P   F+   K+P+   T +  PS L +   +  S    S+ S   T  +SYKV
Sbjct: 113 LSTMKVSPHCTFQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKV 292

Query: 55  -VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-ML 112
            +I  +G   + E   D  IL  A  +G+++P+ C+ G C TC  +++SG+VDQSDG  L
Sbjct: 293 KLIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFL 472

Query: 113 SDDVVERGYALLCASYPRSDCHI 135
            D+ ++ G+ L C SYP +DC I
Sbjct: 473 DDNQLKEGFVLTCVSYPTADCVI 541


>TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloroplast
           precursor, partial (69%)
          Length = 771

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 42/96 (43%), Positives = 58/96 (59%), Gaps = 2/96 (2%)
 Frame = +1

Query: 50  SSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
           +SY V +I  EG+  + E   D  IL KA + G+D+P+ CK G C +C  +++SG VDQS
Sbjct: 334 ASYNVKLITPEGEQ-EFECPDDVFILEKAEEFGIDLPYSCKAGACSSCAGKVVSGKVDQS 510

Query: 109 DGMLSDDV-VERGYALLCASYPRSDCHIRVIPEDEL 143
           DG   DD  +  G+ L C +YP SD  I+   EDEL
Sbjct: 511 DGSYLDDTQIGNGFVLTCVAYPTSDVVIQTHQEDEL 618


>TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
           (94%)
          Length = 950

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
 Frame = +1

Query: 10  TLFRQKHPTTKLPYPSQLNTRPRLGSGSH--PSSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
           T F ++ P T     + L T P +G       S      T  +SYKV +I  EG+  + E
Sbjct: 124 TSFMRRQPMTT----TSLKTFPNVGEALFGLKSGRGGRVTCMASYKVKLITPEGEV-EFE 288

Query: 67  VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-MLSDDVVERGYALLC 125
              D  I+ KA D G+++P+ C+ G C++C  +++ G VDQSDG  L D+ ++ G+ L C
Sbjct: 289 CPDDVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSFLDDEQIDSGWVLTC 468

Query: 126 ASYPRSDCHIRVIPEDEL 143
            + PRSD  I    E E+
Sbjct: 469 VAQPRSDVVIETHKEGEI 522


>TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
           precursor, partial (78%)
          Length = 739

 Score = 77.0 bits (188), Expect = 3e-15
 Identities = 40/96 (41%), Positives = 61/96 (62%), Gaps = 2/96 (2%)
 Frame = +1

Query: 50  SSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
           ++YKV +I  EG+  + E   D  IL +A ++G+D+P+ C+ G C  C A+++SG +DQS
Sbjct: 196 ATYKVKLITPEGEQ-EFECPDDIYILDQAEENGIDLPYSCRAGSCSACAAKVVSGKLDQS 372

Query: 109 DG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
           DG  L DD ++ G+ L C +YP SD  I    E+EL
Sbjct: 373 DGSFLDDDQIDAGFVLTCVAYPTSDIVIETHREEEL 480


>TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
           (81%)
          Length = 1009

 Score = 73.6 bits (179), Expect = 4e-14
 Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
 Frame = +1

Query: 47  TVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTV 105
           T  +SYKV +I  EG+  + E   D  I+ KA + G+++P+ C+ G C++C  +++ G V
Sbjct: 184 TCMASYKVKLITPEGEV-EFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDV 360

Query: 106 DQSDG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
           DQSDG  L D+ +E G+ L C + PRSD  I    + E+
Sbjct: 361 DQSDGSFLDDEQIESGWVLTCVALPRSDVVIETHKDGEI 477


>TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), partial
           (79%)
          Length = 1057

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 35/95 (36%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
 Frame = +1

Query: 50  SSYKVVIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSD 109
           SS ++  E EG+  + E   D  I+ KA + G+++P+ C+ G C++C  +++ G VDQSD
Sbjct: 133 SSCRIRHEAEGEV-EFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDVDQSD 309

Query: 110 G-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
           G  L D+ +E G+ L C + PRSD  I    + E+
Sbjct: 310 GSFLDDEQIESGWVLTCVALPRSDVVIETHKDGEI 414


>TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
           precursor, partial (78%)
          Length = 731

 Score = 70.9 bits (172), Expect = 2e-13
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +3

Query: 47  TVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTV 105
           T  +S+KV +I  EG+  + E   D  IL +A + GL++P+ C+ G C  C  +++SG V
Sbjct: 231 TAMASFKVKLITPEGEK-EFECPDDVYILDQAEEEGLELPYSCRAGSCSVCAGKVVSGKV 407

Query: 106 DQSDG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
           D SD   L D+ +E G+ L C +YP SD  I    E++L
Sbjct: 408 DNSDATFLEDEQLEAGFTLTCVAYPTSDVVIETHKEEDL 524


>TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%)
          Length = 450

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
 Frame = +3

Query: 1   MATLQFTPLTL-FRQKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV- 54
           MATL     TL    K+P+   T +  PS L +   +  S    S+ S   T  +SYKV 
Sbjct: 69  MATLSTNHCTLQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKVK 248

Query: 55  VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSD 114
           +I  +G   + E   D  IL  A  +G+++P+ C+ G C TC  +++SG+VDQSDG   D
Sbjct: 249 LIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLD 428

Query: 115 D 115
           D
Sbjct: 429 D 431


>TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%)
          Length = 804

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 40/138 (28%), Positives = 67/138 (47%), Gaps = 3/138 (2%)
 Frame = +2

Query: 13  RQKHPTTKLPYPSQLNTRPRLGSGSHPSSPSLTFTVRSSYKVVIE--HEGKTTQLEVEPD 70
           R+K  T K    ++L T      G+   SPS+      ++KV +     G   +  V  D
Sbjct: 86  RRKATTAK----AELGTAVARTGGAGYQSPSVDVP---THKVTVHDRQRGIVHEFVVPED 244

Query: 71  ETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGM-LSDDVVERGYALLCASYP 129
           + IL  A    + +P  C+ G C +C  R+  G + Q + + +S ++ ++GYALLC  +P
Sbjct: 245 QYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISAELRDKGYALLCVGFP 424

Query: 130 RSDCHIRVIPEDELLSMQ 147
            SD  +    EDE+  +Q
Sbjct: 425 TSDVEVETQDEDEVYWLQ 478


>CD394083 
          Length = 691

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 37/109 (33%), Positives = 57/109 (51%), Gaps = 3/109 (2%)
 Frame = +2

Query: 10  TLFRQKHPTTKLPYPSQLNTRPRLGSGSH--PSSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
           T F ++ P T     + L T P +G       S      T  +SYKV +I  EG+  + E
Sbjct: 380 TSFMRRQPMTT----TSLKTFPNVGEALFGLKSGRGGRVTCMASYKVKLITPEGEV-EFE 544

Query: 67  VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDD 115
              +  I+ KA D G+++P+ C+ G C++C  +++ G VDQSDG   DD
Sbjct: 545 CPDNVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSFLDD 691


>CD393864 
          Length = 624

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 30/98 (30%), Positives = 51/98 (51%), Gaps = 3/98 (3%)
 Frame = -3

Query: 51  SYKVVIE--HEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
           ++KV +     G   +  V  D+ IL  A    + +P  C+ G C +C  R+  G + Q 
Sbjct: 613 THKVTVHDRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGPIRQP 434

Query: 109 DGM-LSDDVVERGYALLCASYPRSDCHIRVIPEDELLS 145
           + + +S ++ ++GYALLC  +P SD  +    EDE +S
Sbjct: 433 EALGISAELRDKGYALLCVGFPTSDVEVETQDEDENIS 320


>TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
           (72%)
          Length = 822

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 39/126 (30%), Positives = 60/126 (46%), Gaps = 4/126 (3%)
 Frame = +3

Query: 10  TLFRQKHPTTKLPYPSQLNTRPRLGSGSHP--SSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
           T F ++ P T     + L T P +G       S      T  +SYKV +I  EG+  + E
Sbjct: 453 TSFMRRQPMTT----TSLKTFPNVGEALFGLNSGRGGRVTCMASYKVKLITPEGEV-EFE 617

Query: 67  VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGML-SDDVVERGYALLC 125
              D   + KA   G D+P+ C+ G C++C   ++ G V QSDG    D   +RG+ + C
Sbjct: 618 CPDDVFSVDKAEYGGTDLPYSCRAGSCVSCAG*IVVGAVVQSDGSFPHDSRRDRGWVVSC 797

Query: 126 ASYPRS 131
            + P +
Sbjct: 798 VAPPEA 815


>AW460079 
          Length = 271

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 55  VIEHE---GKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGM 111
           VI H+   G   +  +  D  IL  A    + +P DC  G C +C  R+ +G + Q + +
Sbjct: 8   VILHDIQLGIINKFNMPDDHYILHTADAQNITLPFDCMHGCCTSCAVRMKNGKIMQPEAL 187

Query: 112 -LSDDVVERGYALLCASYPRSDCHI 135
            +S ++ + GY+L+   +P S+  I
Sbjct: 188 RISAELRDNGYSLI*NLFPTSNIEI 262


>TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for by A.
           thaliana cDNA R65118; coded for by A. thaliana cDNA
           T43996 {Arabidopsis thaliana;} , partial (79%)
          Length = 1128

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 98  ARLISGTVDQSDG-MLSDDVVERGYALLCASYPRSD 132
           A+++ G VDQSDG  L D+ ++ G+ L C + PRSD
Sbjct: 300 AKIVEGNVDQSDGSFLDDEQIDSGWVLTCVAQPRSD 193


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,708,277
Number of Sequences: 63676
Number of extensions: 82419
Number of successful extensions: 705
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of query: 153
length of database: 12,639,632
effective HSP length: 89
effective length of query: 64
effective length of database: 6,972,468
effective search space: 446237952
effective search space used: 446237952
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)


Medicago: description of AC135320.16