
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135320.16 + phase: 0
(153 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3... 212 5e-56
TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor... 89 6e-19
TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chlor... 88 2e-18
TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred... 86 5e-18
AI856628 similar to GP|21592364|gb| ferredoxin {Arabidopsis thal... 84 3e-17
TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferred... 84 3e-17
CA852999 84 3e-17
TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloropla... 78 2e-15
TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 78 2e-15
TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop... 77 3e-15
TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 74 4e-14
TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), ... 71 2e-13
TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chlorop... 71 2e-13
TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%) 67 4e-12
TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%) 60 3e-10
CD394083 60 5e-10
CD393864 57 3e-09
TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I,... 52 1e-07
AW460079 40 3e-04
TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for... 40 4e-04
>TC228962 similar to UP|O23344 (O23344) Ferredoxin (AT4G14890/DL3485W),
partial (68%)
Length = 677
Score = 212 bits (540), Expect = 5e-56
Identities = 115/158 (72%), Positives = 129/158 (80%), Gaps = 5/158 (3%)
Frame = +1
Query: 1 MATLQFT--PLTLFRQK--HPTTKLPYPSQLNT-RPRLGSGSHPSSPSLTFTVRSSYKVV 55
MA+LQ T P TL RQ+ HPT K SQLN RPR L +VRS YKVV
Sbjct: 67 MASLQLTTTPFTLLRQQRQHPTKKKSTASQLNPPRPR----------PLRVSVRS-YKVV 213
Query: 56 IEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDD 115
IEH+G++T++EVEPDETILSKALDSGL VPHDCKLGVCMTCPARLISG+VDQSDGMLSDD
Sbjct: 214 IEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDD 393
Query: 116 VVERGYALLCASYPRSDCHIRVIPEDELLSMQLATAND 153
VVERGYALLCA+YP+SDCHI++IPEDELLS+QLATAND
Sbjct: 394 VVERGYALLCAAYPQSDCHIKIIPEDELLSLQLATAND 507
>TC226243 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
precursor (Fd III), partial (66%)
Length = 1112
Score = 89.4 bits (220), Expect = 6e-19
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 11/163 (6%)
Frame = +1
Query: 1 MATLQFTPLTL-FRQKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV- 54
MATL TL K+P+ T + PS L + + S S+ S T +SYKV
Sbjct: 511 MATLSTNHCTLQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKVK 690
Query: 55 VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-MLS 113
+I +G + E D IL A +G+++P+ C+ G C TC +++SG+VDQSDG L
Sbjct: 691 LIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLD 870
Query: 114 DDVVERGYALLCASYPRSDCHIRVIPEDEL----LSMQLATAN 152
D+ ++ G+ L C SYP +DC I E +L L+++L T N
Sbjct: 871 DNQLKEGFVLTCVSYPTADCVIETHKEGDLY*AMLALKLGTGN 999
>TC226241 similar to UP|FER3_MAIZE (P27788) Ferredoxin III, chloroplast
precursor (Fd III), partial (72%)
Length = 764
Score = 87.8 bits (216), Expect = 2e-18
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Frame = +1
Query: 1 MATLQFTPLTLFR--QKHPTT---KLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV 54
++T++ +P +F+ K+P+T + PS + + S SS S T +SYKV
Sbjct: 100 LSTVKVSPHCMFQTASKNPSTVATTMKCPSSFGSVKSISRSFGLKSSSSFRVTAMASYKV 279
Query: 55 -VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-ML 112
+I +G + E D IL A +G+++P+ C+ G C TC ++++G+VDQSDG L
Sbjct: 280 KLIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVAGSVDQSDGSFL 459
Query: 113 SDDVVERGYALLCASYPRSDCHIRVIPEDELLSMQLA 149
D+ ++ G+ L C SYP +DC I E +L LA
Sbjct: 460 DDNQLKEGFVLTCVSYPTADCVIETHKEGDLY*AMLA 570
>TC215718 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
precursor, partial (84%)
Length = 924
Score = 86.3 bits (212), Expect = 5e-18
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Frame = +1
Query: 24 PSQLNTRPRLGSGSHPSSPSLTFTVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGL 82
PS L + + S S + + YKV +I +G+ + E D IL A ++G+
Sbjct: 298 PSSLRSVKNVSKVFGLKSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDTYILDSAENAGV 477
Query: 83 DVPHDCKLGVCMTCPARLISGTVDQSD-GMLSDDVVERGYALLCASYPRSDCHIRVIPED 141
++P+ C+ G C TC +++SG+VDQ+D L D +E+GY L C SYP+SDC I E+
Sbjct: 478 ELPYSCRAGACSTCAGQVVSGSVDQADQSFLDDHQIEKGYLLTCVSYPKSDCVIHTHKEE 657
Query: 142 ELL 144
+L+
Sbjct: 658 DLV 666
>AI856628 similar to GP|21592364|gb| ferredoxin {Arabidopsis thaliana},
partial (23%)
Length = 327
Score = 84.0 bits (206), Expect = 3e-17
Identities = 54/92 (58%), Positives = 63/92 (67%), Gaps = 5/92 (5%)
Frame = +3
Query: 1 MATLQFT--PLTLFRQK--HPTTKLPYPSQLNT-RPRLGSGSHPSSPSLTFTVRSSYKVV 55
MA+LQ T P TL RQ+ HPT K SQLN RPR L +VRS YKVV
Sbjct: 33 MASLQLTTTPFTLLRQQRQHPTKKKSTASQLNPPRPR----------PLRVSVRS-YKVV 179
Query: 56 IEHEGKTTQLEVEPDETILSKALDSGLDVPHD 87
IEH+G++T++EVEPDETILSKALDSGL VPH+
Sbjct: 180 IEHDGESTEVEVEPDETILSKALDSGLSVPHE 275
>TC215719 similar to UP|Q39648 (Q39648) Non-photosynthetic ferredoxin
precursor, partial (84%)
Length = 853
Score = 84.0 bits (206), Expect = 3e-17
Identities = 43/123 (34%), Positives = 69/123 (55%), Gaps = 2/123 (1%)
Frame = +2
Query: 24 PSQLNTRPRLGSGSHPSSPSLTFTVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGL 82
PS L + + S S + + YKV +I +G+ + E D IL A ++G+
Sbjct: 227 PSSLRSVKNVSKVFGLKSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDTYILDAAENAGV 406
Query: 83 DVPHDCKLGVCMTCPARLISGTVDQSD-GMLSDDVVERGYALLCASYPRSDCHIRVIPED 141
++P+ C+ G C TC ++SG+VDQ+D L D +++GY L C SYP+SDC I E+
Sbjct: 407 ELPYSCRAGACSTCAGHVVSGSVDQADQSFLDDHQIKKGYLLTCVSYPKSDCVIHTHKEE 586
Query: 142 ELL 144
+L+
Sbjct: 587 DLV 595
>CA852999
Length = 545
Score = 84.0 bits (206), Expect = 3e-17
Identities = 50/143 (34%), Positives = 81/143 (55%), Gaps = 8/143 (5%)
Frame = +2
Query: 1 MATLQFTPLTLFR--QKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV 54
++T++ +P F+ K+P+ T + PS L + + S S+ S T +SYKV
Sbjct: 113 LSTMKVSPHCTFQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKV 292
Query: 55 -VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-ML 112
+I +G + E D IL A +G+++P+ C+ G C TC +++SG+VDQSDG L
Sbjct: 293 KLIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFL 472
Query: 113 SDDVVERGYALLCASYPRSDCHI 135
D+ ++ G+ L C SYP +DC I
Sbjct: 473 DDNQLKEGFVLTCVSYPTADCVI 541
>TC207668 similar to UP|FER1_PEA (P09911) Ferredoxin I, chloroplast
precursor, partial (69%)
Length = 771
Score = 77.8 bits (190), Expect = 2e-15
Identities = 42/96 (43%), Positives = 58/96 (59%), Gaps = 2/96 (2%)
Frame = +1
Query: 50 SSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
+SY V +I EG+ + E D IL KA + G+D+P+ CK G C +C +++SG VDQS
Sbjct: 334 ASYNVKLITPEGEQ-EFECPDDVFILEKAEEFGIDLPYSCKAGACSSCAGKVVSGKVDQS 510
Query: 109 DGMLSDDV-VERGYALLCASYPRSDCHIRVIPEDEL 143
DG DD + G+ L C +YP SD I+ EDEL
Sbjct: 511 DGSYLDDTQIGNGFVLTCVAYPTSDVVIQTHQEDEL 618
>TC203601 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(94%)
Length = 950
Score = 77.8 bits (190), Expect = 2e-15
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Frame = +1
Query: 10 TLFRQKHPTTKLPYPSQLNTRPRLGSGSH--PSSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
T F ++ P T + L T P +G S T +SYKV +I EG+ + E
Sbjct: 124 TSFMRRQPMTT----TSLKTFPNVGEALFGLKSGRGGRVTCMASYKVKLITPEGEV-EFE 288
Query: 67 VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDG-MLSDDVVERGYALLC 125
D I+ KA D G+++P+ C+ G C++C +++ G VDQSDG L D+ ++ G+ L C
Sbjct: 289 CPDDVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSFLDDEQIDSGWVLTC 468
Query: 126 ASYPRSDCHIRVIPEDEL 143
+ PRSD I E E+
Sbjct: 469 VAQPRSDVVIETHKEGEI 522
>TC203432 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
precursor, partial (78%)
Length = 739
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/96 (41%), Positives = 61/96 (62%), Gaps = 2/96 (2%)
Frame = +1
Query: 50 SSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
++YKV +I EG+ + E D IL +A ++G+D+P+ C+ G C C A+++SG +DQS
Sbjct: 196 ATYKVKLITPEGEQ-EFECPDDIYILDQAEENGIDLPYSCRAGSCSACAAKVVSGKLDQS 372
Query: 109 DG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
DG L DD ++ G+ L C +YP SD I E+EL
Sbjct: 373 DGSFLDDDQIDAGFVLTCVAYPTSDIVIETHREEEL 480
>TC203256 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(81%)
Length = 1009
Score = 73.6 bits (179), Expect = 4e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +1
Query: 47 TVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTV 105
T +SYKV +I EG+ + E D I+ KA + G+++P+ C+ G C++C +++ G V
Sbjct: 184 TCMASYKVKLITPEGEV-EFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDV 360
Query: 106 DQSDG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
DQSDG L D+ +E G+ L C + PRSD I + E+
Sbjct: 361 DQSDGSFLDDEQIESGWVLTCVALPRSDVVIETHKDGEI 477
>TC203881 similar to UP|FERA_ALOMA (P81372) Ferredoxin A (Fd A), partial
(79%)
Length = 1057
Score = 71.2 bits (173), Expect = 2e-13
Identities = 35/95 (36%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
Frame = +1
Query: 50 SSYKVVIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSD 109
SS ++ E EG+ + E D I+ KA + G+++P+ C+ G C++C +++ G VDQSD
Sbjct: 133 SSCRIRHEAEGEV-EFECPDDVFIVDKAEEEGIELPYSCRAGSCVSCVGKIVKGDVDQSD 309
Query: 110 G-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
G L D+ +E G+ L C + PRSD I + E+
Sbjct: 310 GSFLDDEQIESGWVLTCVALPRSDVVIETHKDGEI 414
>TC215068 similar to UP|FER1_LYCES (Q43517) Ferredoxin I, chloroplast
precursor, partial (78%)
Length = 731
Score = 70.9 bits (172), Expect = 2e-13
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +3
Query: 47 TVRSSYKV-VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTV 105
T +S+KV +I EG+ + E D IL +A + GL++P+ C+ G C C +++SG V
Sbjct: 231 TAMASFKVKLITPEGEK-EFECPDDVYILDQAEEEGLELPYSCRAGSCSVCAGKVVSGKV 407
Query: 106 DQSDG-MLSDDVVERGYALLCASYPRSDCHIRVIPEDEL 143
D SD L D+ +E G+ L C +YP SD I E++L
Sbjct: 408 DNSDATFLEDEQLEAGFTLTCVAYPTSDVVIETHKEEDL 524
>TC226242 similar to UP|Q9AUE1 (Q9AUE1) Ferredoxin, partial (59%)
Length = 450
Score = 66.6 bits (161), Expect = 4e-12
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Frame = +3
Query: 1 MATLQFTPLTL-FRQKHPT---TKLPYPSQLNTRPRLG-SGSHPSSPSLTFTVRSSYKV- 54
MATL TL K+P+ T + PS L + + S S+ S T +SYKV
Sbjct: 69 MATLSTNHCTLQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKVK 248
Query: 55 VIEHEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSD 114
+I +G + E D IL A +G+++P+ C+ G C TC +++SG+VDQSDG D
Sbjct: 249 LIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLD 428
Query: 115 D 115
D
Sbjct: 429 D 431
>TC215597 similar to UP|Q8YT08 (Q8YT08) Ferredoxin, partial (75%)
Length = 804
Score = 60.5 bits (145), Expect = 3e-10
Identities = 40/138 (28%), Positives = 67/138 (47%), Gaps = 3/138 (2%)
Frame = +2
Query: 13 RQKHPTTKLPYPSQLNTRPRLGSGSHPSSPSLTFTVRSSYKVVIE--HEGKTTQLEVEPD 70
R+K T K ++L T G+ SPS+ ++KV + G + V D
Sbjct: 86 RRKATTAK----AELGTAVARTGGAGYQSPSVDVP---THKVTVHDRQRGIVHEFVVPED 244
Query: 71 ETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGM-LSDDVVERGYALLCASYP 129
+ IL A + +P C+ G C +C R+ G + Q + + +S ++ ++GYALLC +P
Sbjct: 245 QYILHTAEAQNITLPFACRHGCCTSCAVRIKKGQIRQPEALGISAELRDKGYALLCVGFP 424
Query: 130 RSDCHIRVIPEDELLSMQ 147
SD + EDE+ +Q
Sbjct: 425 TSDVEVETQDEDEVYWLQ 478
>CD394083
Length = 691
Score = 59.7 bits (143), Expect = 5e-10
Identities = 37/109 (33%), Positives = 57/109 (51%), Gaps = 3/109 (2%)
Frame = +2
Query: 10 TLFRQKHPTTKLPYPSQLNTRPRLGSGSH--PSSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
T F ++ P T + L T P +G S T +SYKV +I EG+ + E
Sbjct: 380 TSFMRRQPMTT----TSLKTFPNVGEALFGLKSGRGGRVTCMASYKVKLITPEGEV-EFE 544
Query: 67 VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDD 115
+ I+ KA D G+++P+ C+ G C++C +++ G VDQSDG DD
Sbjct: 545 CPDNVFIVDKAEDEGIELPYSCRAGSCVSCVGKIVEGNVDQSDGSFLDD 691
>CD393864
Length = 624
Score = 57.0 bits (136), Expect = 3e-09
Identities = 30/98 (30%), Positives = 51/98 (51%), Gaps = 3/98 (3%)
Frame = -3
Query: 51 SYKVVIE--HEGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQS 108
++KV + G + V D+ IL A + +P C+ G C +C R+ G + Q
Sbjct: 613 THKVTVHDRQRGIVHEFVVPEDQYILHTAEAQNITLPFACRHGCCTSCAVRIKKGPIRQP 434
Query: 109 DGM-LSDDVVERGYALLCASYPRSDCHIRVIPEDELLS 145
+ + +S ++ ++GYALLC +P SD + EDE +S
Sbjct: 433 EALGISAELRDKGYALLCVGFPTSDVEVETQDEDENIS 320
>TC203412 similar to UP|Q6Q8B8 (Q6Q8B8) Chloroplast ferredoxin I, partial
(72%)
Length = 822
Score = 52.0 bits (123), Expect = 1e-07
Identities = 39/126 (30%), Positives = 60/126 (46%), Gaps = 4/126 (3%)
Frame = +3
Query: 10 TLFRQKHPTTKLPYPSQLNTRPRLGSGSHP--SSPSLTFTVRSSYKV-VIEHEGKTTQLE 66
T F ++ P T + L T P +G S T +SYKV +I EG+ + E
Sbjct: 453 TSFMRRQPMTT----TSLKTFPNVGEALFGLNSGRGGRVTCMASYKVKLITPEGEV-EFE 617
Query: 67 VEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGML-SDDVVERGYALLC 125
D + KA G D+P+ C+ G C++C ++ G V QSDG D +RG+ + C
Sbjct: 618 CPDDVFSVDKAEYGGTDLPYSCRAGSCVSCAG*IVVGAVVQSDGSFPHDSRRDRGWVVSC 797
Query: 126 ASYPRS 131
+ P +
Sbjct: 798 VAPPEA 815
>AW460079
Length = 271
Score = 40.4 bits (93), Expect = 3e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 55 VIEHE---GKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGM 111
VI H+ G + + D IL A + +P DC G C +C R+ +G + Q + +
Sbjct: 8 VILHDIQLGIINKFNMPDDHYILHTADAQNITLPFDCMHGCCTSCAVRMKNGKIMQPEAL 187
Query: 112 -LSDDVVERGYALLCASYPRSDCHI 135
+S ++ + GY+L+ +P S+ I
Sbjct: 188 RISAELRDNGYSLI*NLFPTSNIEI 262
>TC203848 weakly similar to GB|AAC19282.1|3193298|T14P8 coded for by A.
thaliana cDNA R65118; coded for by A. thaliana cDNA
T43996 {Arabidopsis thaliana;} , partial (79%)
Length = 1128
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 98 ARLISGTVDQSDG-MLSDDVVERGYALLCASYPRSD 132
A+++ G VDQSDG L D+ ++ G+ L C + PRSD
Sbjct: 300 AKIVEGNVDQSDGSFLDDEQIDSGWVLTCVAQPRSD 193
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,708,277
Number of Sequences: 63676
Number of extensions: 82419
Number of successful extensions: 705
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of query: 153
length of database: 12,639,632
effective HSP length: 89
effective length of query: 64
effective length of database: 6,972,468
effective search space: 446237952
effective search space used: 446237952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC135320.16