Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.9 + phase: 0 /pseudo
         (734 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211630                                                               70  3e-24
BG790334 weakly similar to GP|2160154|gb| F19K23.18 gene product...    36  0.054
TC226902 weakly similar to UP|DMWD_HUMAN (Q09019) Dystrophia myo...    32  1.0
BQ453869 homologue to GP|23271009|gb PRP4 pre-mRNA processing fa...    30  3.8
BI945526                                                               30  5.0

>TC211630 
          Length = 829

 Score = 69.7 bits (169), Expect(2) = 3e-24
 Identities = 32/36 (88%), Positives = 34/36 (93%)
 Frame = +3

Query: 699 AEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDW 734
           AEADLLYSLITKAKFENNRYQKPKK+ K S+QHVDW
Sbjct: 378 AEADLLYSLITKAKFENNRYQKPKKQPKSSSQHVDW 485



 Score = 61.2 bits (147), Expect(2) = 3e-24
 Identities = 27/37 (72%), Positives = 31/37 (82%)
 Frame = +2

Query: 662 QSWGRLPSSVRCWTMPEKLHSLCNPITENYFGGIT*Q 698
           +SWGRLPSS+ CWTMP KLHSL NP+T+N  GG T*Q
Sbjct: 239 RSWGRLPSSMCCWTMP*KLHSLRNPVTKNSLGGAT*Q 349


>BG790334 weakly similar to GP|2160154|gb| F19K23.18 gene product
           {Arabidopsis thaliana}, partial (19%)
          Length = 390

 Score = 36.2 bits (82), Expect = 0.054
 Identities = 19/44 (43%), Positives = 26/44 (58%)
 Frame = +1

Query: 471 CLQSCRISRERYGAFGIYD**SRYKSSVRTLCLRCRHVGQGRTS 514
           C++ CRIS  R  A  I+D**  Y ++   LCL C H+G  R +
Sbjct: 58  CMRPCRIS*RRVEAIQIHD**LWY*ATG*ALCLPCGHLGTARAA 189


>TC226902 weakly similar to UP|DMWD_HUMAN (Q09019) Dystrophia
           myotonica-containing WD repeat motif protein (DMR-N9
           protein) (Protein 59) (Fragment), partial (14%)
          Length = 1153

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 32  PISFNHKISPQPRRFNISSYPLRQRPKPHSRFFHPCPNHQTT 73
           P+S+  +  PQP     S   L   P P    FHPC  H  T
Sbjct: 354 PMSYVPRPMPQPCDLPCSKLELNHLPLPSKYIFHPCSMHNIT 229


>BQ453869 homologue to GP|23271009|gb PRP4 pre-mRNA processing factor 4
           homolog B (yeast) {Homo sapiens}, partial (1%)
          Length = 409

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 26  ATTFPIPISFNHKISPQPRRFNISSY 51
           A  FPIP+ F++  SPQ +RF  S++
Sbjct: 194 AKRFPIPLLFSYPFSPQQQRFPFSTH 271


>BI945526 
          Length = 375

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 167 WLEIRNLYQCNTNDPWSGVCWWL*ERDYCRECS 199
           W   R   + +++ P S   WW   RD CR CS
Sbjct: 116 WFTRRRRLRWSSSSPISSPTWWYGTRDRCRICS 214


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.365    0.163    0.692 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,888,867
Number of Sequences: 63676
Number of extensions: 797329
Number of successful extensions: 13078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5480
Number of HSP's successfully gapped in prelim test: 600
Number of HSP's that attempted gapping in prelim test: 7190
Number of HSP's gapped (non-prelim): 6819
length of query: 734
length of database: 12,639,632
effective HSP length: 104
effective length of query: 630
effective length of database: 6,017,328
effective search space: 3790916640
effective search space used: 3790916640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 63 (28.9 bits)


Medicago: description of AC135319.9