
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135319.9 + phase: 0 /pseudo
(734 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211630 70 3e-24
BG790334 weakly similar to GP|2160154|gb| F19K23.18 gene product... 36 0.054
TC226902 weakly similar to UP|DMWD_HUMAN (Q09019) Dystrophia myo... 32 1.0
BQ453869 homologue to GP|23271009|gb PRP4 pre-mRNA processing fa... 30 3.8
BI945526 30 5.0
>TC211630
Length = 829
Score = 69.7 bits (169), Expect(2) = 3e-24
Identities = 32/36 (88%), Positives = 34/36 (93%)
Frame = +3
Query: 699 AEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDW 734
AEADLLYSLITKAKFENNRYQKPKK+ K S+QHVDW
Sbjct: 378 AEADLLYSLITKAKFENNRYQKPKKQPKSSSQHVDW 485
Score = 61.2 bits (147), Expect(2) = 3e-24
Identities = 27/37 (72%), Positives = 31/37 (82%)
Frame = +2
Query: 662 QSWGRLPSSVRCWTMPEKLHSLCNPITENYFGGIT*Q 698
+SWGRLPSS+ CWTMP KLHSL NP+T+N GG T*Q
Sbjct: 239 RSWGRLPSSMCCWTMP*KLHSLRNPVTKNSLGGAT*Q 349
>BG790334 weakly similar to GP|2160154|gb| F19K23.18 gene product
{Arabidopsis thaliana}, partial (19%)
Length = 390
Score = 36.2 bits (82), Expect = 0.054
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = +1
Query: 471 CLQSCRISRERYGAFGIYD**SRYKSSVRTLCLRCRHVGQGRTS 514
C++ CRIS R A I+D** Y ++ LCL C H+G R +
Sbjct: 58 CMRPCRIS*RRVEAIQIHD**LWY*ATG*ALCLPCGHLGTARAA 189
>TC226902 weakly similar to UP|DMWD_HUMAN (Q09019) Dystrophia
myotonica-containing WD repeat motif protein (DMR-N9
protein) (Protein 59) (Fragment), partial (14%)
Length = 1153
Score = 32.0 bits (71), Expect = 1.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -2
Query: 32 PISFNHKISPQPRRFNISSYPLRQRPKPHSRFFHPCPNHQTT 73
P+S+ + PQP S L P P FHPC H T
Sbjct: 354 PMSYVPRPMPQPCDLPCSKLELNHLPLPSKYIFHPCSMHNIT 229
>BQ453869 homologue to GP|23271009|gb PRP4 pre-mRNA processing factor 4
homolog B (yeast) {Homo sapiens}, partial (1%)
Length = 409
Score = 30.0 bits (66), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 26 ATTFPIPISFNHKISPQPRRFNISSY 51
A FPIP+ F++ SPQ +RF S++
Sbjct: 194 AKRFPIPLLFSYPFSPQQQRFPFSTH 271
>BI945526
Length = 375
Score = 29.6 bits (65), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 167 WLEIRNLYQCNTNDPWSGVCWWL*ERDYCRECS 199
W R + +++ P S WW RD CR CS
Sbjct: 116 WFTRRRRLRWSSSSPISSPTWWYGTRDRCRICS 214
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.365 0.163 0.692
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,888,867
Number of Sequences: 63676
Number of extensions: 797329
Number of successful extensions: 13078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5480
Number of HSP's successfully gapped in prelim test: 600
Number of HSP's that attempted gapping in prelim test: 7190
Number of HSP's gapped (non-prelim): 6819
length of query: 734
length of database: 12,639,632
effective HSP length: 104
effective length of query: 630
effective length of database: 6,017,328
effective search space: 3790916640
effective search space used: 3790916640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC135319.9