BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135319.4 - phase: 0
(581 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 82 5e-16
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 67 2e-11
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 65 6e-11
CA851073 65 1e-10
BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevi... 60 2e-09
BQ453949 60 2e-09
CO979823 60 4e-09
TC231922 59 8e-09
TC213061 59 8e-09
TC233956 58 1e-08
TC233392 57 2e-08
CO982349 57 3e-08
TC234693 55 7e-08
TC211008 55 9e-08
BE610670 55 9e-08
CF922212 54 1e-07
BM891241 54 3e-07
TC212765 53 3e-07
TC218426 similar to UP|Q6IK74 (Q6IK74) HDC13250, partial (9%) 52 7e-07
CO981985 34 1e-05
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 82.4 bits (202), Expect = 5e-16
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Frame = +2
Query: 39 LPQNICDSIDQTTRNFIWRGTTN-KGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKL 97
LP I ++ R F+W G + + I VNWK + LPK GGL I+ R NT+LLGK
Sbjct: 17 LP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKW 196
Query: 98 VWDMVQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNI-----LKDGYTW 152
WD+ + W +L +KY G S+ ++ S W +I+ + + LK W
Sbjct: 197 RWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRETIW 376
Query: 153 RIGSGSS-SFWFSNWNS 168
++G G FW W +
Sbjct: 377 KVGGGDRIKFWEDLWTN 427
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 67.0 bits (162), Expect = 2e-11
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +2
Query: 17 GRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKG-IHLVNWKKISLP 75
GR+TL SVL+++P + +PQ I D + R F+W GT + I V W I P
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 76 KNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSL 112
K GGL I+ N +L G+ +W + + N+LW L
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 65.5 bits (158), Expect = 6e-11
Identities = 33/81 (40%), Positives = 49/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 2 QTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIW-RGTT 60
+ +L+ WK R ++ GR+TL SVLTSIP YF +PQ++ D + + R F+W G
Sbjct: 667 ERKLSKWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPD 846
Query: 61 NKGIHLVNWKKISLPKNIGGL 81
K I + W+K+ LPK GG+
Sbjct: 847 QKKISWIRWEKLCLPKERGGI 909
>CA851073
Length = 633
Score = 64.7 bits (156), Expect = 1e-10
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 14/169 (8%)
Frame = +1
Query: 220 QFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLI 279
Q +++D ++W + G Y+TKS + L+T E + + IW+LK+P +
Sbjct: 7 QIQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSE--ANIFKTIWKLKIPPRAAVFS 180
Query: 280 WLACQNAVPTLSLLYHRSMA-PSPICTRCGEEDETFMHCVRDCCFSKDIW-------QKI 331
W ++ +PT L R+++ C CG E E H +C ++ +W Q +
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQIV 360
Query: 332 GFTSNDFVTTATTYDWIKLGISGSRSSIFLAGLWW------VWRHRNLM 374
G S V+ A+ + G R+ G WW +W+HRNL+
Sbjct: 361 GPLS---VSPASHFVQFCDGFGAGRNHTRWCG-WWIALTSSIWKHRNLL 495
>BI785148 homologue to GP|25166165|dbj murF {Wigglesworthia brevipalpis},
partial (2%)
Length = 422
Score = 60.5 bits (145), Expect = 2e-09
Identities = 31/120 (25%), Positives = 58/120 (47%)
Frame = -2
Query: 271 VPEKYKFLIWLACQNAVPTLSLLYHRSMAPSPICTRCGEEDETFMHCVRDCCFSKDIWQK 330
+P+K + + WL N++ S +HR++ S C E +HC+RD +K+IW
Sbjct: 421 IPKKIRIMFWLILHNSLSKNSTRFHRNLVNSSAFPHCSNPREDSLHCLRDFPHAKEIWLG 242
Query: 331 IGFTSNDFVTTATTYDWIKLGISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNI 390
GF + + +K ++GS+ +F +WWV + N ++E + R+ +I
Sbjct: 241 FGFAPH-LSSLPLM*SGLKSQLNGSKVFLFTTIVWWV*KWGNNCIFDDEKWDIQRVVQSI 65
>BQ453949
Length = 450
Score = 60.5 bits (145), Expect = 2e-09
Identities = 36/110 (32%), Positives = 53/110 (47%), Gaps = 1/110 (0%)
Frame = +3
Query: 220 QFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLI 279
Q + D L+W N +G+Y+TKS +N+L IE A+ IW LK+P +
Sbjct: 9 QIQPSSRDLLLWGSNSDGSYSTKSAYNFLKNEDSQTIED--SAFKNIWNLKLPPRACAFS 182
Query: 280 WLACQNAVPTLSLLYHRSM-APSPICTRCGEEDETFMHCVRDCCFSKDIW 328
N +PT L R + PS C C EE+ET H + C ++ +W
Sbjct: 183 *RIF*NRIPTKVNLRRRHVKLPSSNCPLCDEEEETVGHVMYSCIKTRHLW 332
>CO979823
Length = 853
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/175 (25%), Positives = 71/175 (39%), Gaps = 14/175 (8%)
Frame = -2
Query: 220 QFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKYKFLI 279
Q + ED +W G Y+TKSG++ L I+ ++ IW+LK+P K
Sbjct: 723 QIHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDA--DFAEIWKLKIPTKAAVFA 550
Query: 280 WLACQNAVPTLSLLYHRS-MAPSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFTSNDF 338
W ++ +PT S L R M +C C +E H +C + +W + S +
Sbjct: 549 WRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLW----WESMSW 382
Query: 339 VTTATTYDW------------IKLGISGSR-SSIFLAGLWWVWRHRNLMCLNNET 380
V T I G+ R ++A W +W+HRN + N T
Sbjct: 381 VNLKTAMPQTPRQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVFQNAT 217
>TC231922
Length = 803
Score = 58.5 bits (140), Expect = 8e-09
Identities = 36/121 (29%), Positives = 55/121 (44%), Gaps = 1/121 (0%)
Frame = -3
Query: 209 DVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWR 268
D N I+ I Q + D++ W + +G Y+TKS + L+ S PA P + +W
Sbjct: 492 DFMNEISGISIQ--NQAHDSMFWKADSSGVYSTKSAYRLLMPSISPA--PSRRIFQILWH 325
Query: 269 LKVPEKYKFLIWLACQNAVPTLSLLYHRSMAPSPI-CTRCGEEDETFMHCVRDCCFSKDI 327
LK+P + W + +PT L RS+ I C CG + E H C +K +
Sbjct: 324 LKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEEAGHLFFHCKMTKGL 145
Query: 328 W 328
W
Sbjct: 144 W 142
>TC213061
Length = 823
Score = 58.5 bits (140), Expect = 8e-09
Identities = 46/206 (22%), Positives = 83/206 (39%), Gaps = 23/206 (11%)
Frame = +2
Query: 209 DVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWR 268
+VE H + +IED +W+ +G+Y +S + +I +P E + +W+
Sbjct: 92 EVEGH------KIRSDIEDQWVWAAESSGSYLARSAYR-VIREGIPEEEQD-REFKELWK 247
Query: 269 LKVPEKYKFLIWLACQNAVPTLSLLYHRSMAPSP-ICTRCGEEDETFMHCVRDCCFSKDI 327
LKVP K W ++ +PT L + + +C C DE+ H C I
Sbjct: 248 LKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPI 427
Query: 328 WQKIGFTSNDFVTTATTYDWIKL---------------------GISGSRSSIF-LAGLW 365
W + + W+KL G+ G+R + LA W
Sbjct: 428 WWE-------------SLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQGNRWKWWWLALTW 568
Query: 366 WVWRHRNLMCLNNETLSLFRLCNNII 391
+W+HRN + +N T + ++ ++ +
Sbjct: 569 TIWKHRNDIIFSNATFNAHKVMDDAV 646
>TC233956
Length = 757
Score = 58.2 bits (139), Expect = 1e-08
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Frame = +2
Query: 214 INNIHT-QFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVP 272
I++IH + N+N D +W G +TKS + +I S + L + +W +KVP
Sbjct: 17 IDHIHEIRLNNNFNDTWVWRAESTGIISTKSAYQ-VIKSELDDEGQHL-GFKKLWEIKVP 190
Query: 273 EKYKFLIWLACQNAVPTLSLLYHRSM-APSPICTRCGEEDETFMHCVRDCCFSKDI-WQK 330
K +W + +PT L R + +C C + ET H C + W+
Sbjct: 191 PKALSFVWRLLWDRLPTKDNLIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPLWWEF 370
Query: 331 IGFTSNDFVTTATTYDWIKLGISGSRSSI--FLAGLWW------VWRHRNLMCLNNETLS 382
+ + D V D S + S + +WW +WR RN + N+T+
Sbjct: 371 LSWVKEDKVFHCRPMDNFLQHYSSAASKVSNTRRTMWWIAVTNSIWRLRNDIIFQNQTVD 550
Query: 383 LFRLCNNII 391
+ RL ++ +
Sbjct: 551 ITRLTDSTL 577
>TC233392
Length = 1145
Score = 57.0 bits (136), Expect = 2e-08
Identities = 43/190 (22%), Positives = 77/190 (39%), Gaps = 14/190 (7%)
Frame = -1
Query: 216 NIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWRLKVPEKY 275
N H Q + D +W N Y+T+S + L+ + E A +W+LK+P K
Sbjct: 689 NSHAQIQQQVPDTWVWKHEPNELYSTRSAYK-LLQGHLEG-EDQDGALQDLWKLKIPAKA 516
Query: 276 KFLIWLACQNAVPTLSLLYHRSMA-PSPICTRCGEEDETFMHCVRDCCFSKDIWQKIGFT 334
W ++ +PT S L+ R + +C C +E H +C + +W +
Sbjct: 515 SIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLW----WE 348
Query: 335 SNDFVTTATTYDWIKL--------GISGSR-----SSIFLAGLWWVWRHRNLMCLNNETL 381
S +V + K G GS+ + ++A W +W+HRN + N
Sbjct: 347 SQTWVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQF 168
Query: 382 SLFRLCNNII 391
+ +L + +
Sbjct: 167 NGIKLLEDAV 138
>CO982349
Length = 795
Score = 56.6 bits (135), Expect = 3e-08
Identities = 26/75 (34%), Positives = 42/75 (55%), Gaps = 1/75 (1%)
Frame = +3
Query: 2 QTRLASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIW-RGTT 60
+T+LA WK R ++ GR+TL N++LT++P YF P + + R F+W G+
Sbjct: 570 ETKLARWKQRHISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSX 749
Query: 61 NKGIHLVNWKKISLP 75
+ I V W+ + LP
Sbjct: 750 QRRIAWVKWETVCLP 794
>TC234693
Length = 289
Score = 55.5 bits (132), Expect = 7e-08
Identities = 27/53 (50%), Positives = 33/53 (61%)
Frame = +3
Query: 527 NISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGIYFV 579
N+ + L EGNQC D AK G NS + +SPP DL PLL ADALG+ F+
Sbjct: 39 NLQVGRFLWEGNQCVDKMAKLGLNSGVGFQLVESPPQDLKPLLMADALGVEFL 197
>TC211008
Length = 516
Score = 55.1 bits (131), Expect = 9e-08
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Frame = +1
Query: 426 LNVDGS--------CIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAELTAIHQG 477
LN DGS C G+ GG++R+S+G ++ GF+ + N++ + LAEL + G
Sbjct: 94 LNTDGSVFENHRNGCSGS----ACGGLVRDSSGCYLGGFTVNLGNTS-VTLAELWGVVHG 258
Query: 478 LKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLL-NDRNISLHHTLRE 536
LKL DL ++ DS A+ L+ + AL+ I +L+ + + H RE
Sbjct: 259 LKLAWDLGCKKVKVDIDSGNALGLVRHGPVANDPAFALVSEINELVRKEWLVEFSHVFRE 438
Query: 537 GNQCADFFAKFG 548
N+ AD A G
Sbjct: 439 SNRAADKLAHLG 474
>BE610670
Length = 368
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = -2
Query: 209 DVENHINNIHTQFNDNIEDALIWSQNKNGTYTTKSGFNWLITSRVPAIEPILHAWSWIWR 268
DV+ H++++ D+LIW + +G Y+TKS +N L + + A IW
Sbjct: 340 DVQIHLSSL---------DSLIWRADPSGAYSTKSAYNLL--KGEGSFDNEDSASKIIWN 194
Query: 269 LKVPEKYKFLIWLACQNAVPTLSLLYHRSM-APSPICTRCGEEDETFMHCVRDCCFSKDI 327
LK+P + W +N +PT + L R + PS C C E+E H + C ++ +
Sbjct: 193 LKIPPRTIAFSWRIFKNRLPTKANLRRRQVELPSYRCPLCDLEEENVGHIMFSCTRTRSL 14
Query: 328 W 328
W
Sbjct: 13 W 11
>CF922212
Length = 445
Score = 54.3 bits (129), Expect = 1e-07
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Frame = -2
Query: 39 LPQNICDSIDQTTRNFIWRGTTN-KGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKL 97
+P + D + + + F+W G K I VNW + LPK GL R R+ N +LLGK
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 98 VWDMVQSSNKLWVSLLSNKYTGGHNTLYASANNRSSPTWSSIIRAKNILKDG-------Y 150
W++ +L +L +KY N S W I + +DG
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVKSESFWWQEISFITHSTEDGSWFEKRTK 82
Query: 151 TWRIGSGSS-SFWFSNW 166
T R+G + FW W
Sbjct: 81 TGRLGCRAKVRFWEDGW 31
>BM891241
Length = 407
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/67 (35%), Positives = 38/67 (55%)
Frame = -2
Query: 61 NKGIHLVNWKKISLPKNIGGLSIRAAREANTSLLGKLVWDMVQSSNKLWVSLLSNKYTGG 120
+K I V W+ + LPK GGL I+ + N +LLGK +W + +LW ++++KY G
Sbjct: 391 HKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINSKYGGW 212
Query: 121 HNTLYAS 127
+ Y S
Sbjct: 211 SDFQYNS 191
>TC212765
Length = 637
Score = 53.1 bits (126), Expect = 3e-07
Identities = 28/69 (40%), Positives = 41/69 (58%)
Frame = +2
Query: 5 LASWKNRLLNKTGRLTLANSVLTSIPSYFMQTNWLPQNICDSIDQTTRNFIWRGTTNKGI 64
LASWK +LLN+ + L VL + P Y M+ +WLPQ+I +ID+ +R IW NK
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIW----NKVG 583
Query: 65 HLVNWKKIS 73
++W +S
Sbjct: 584 ASLSWHSVS 610
>TC218426 similar to UP|Q6IK74 (Q6IK74) HDC13250, partial (9%)
Length = 950
Score = 52.0 bits (123), Expect = 7e-07
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = -3
Query: 498 AVNLIANDTPRYHIYAALIQNIKDLLN-DRNISLHHTLREGNQCADFFAKFGANSDAALV 556
A+ L+ +H YA L+ I+ ++ ++S +HTLREG AD AK GA +LV
Sbjct: 240 ALQLVLQGVQ*WHPYAPLVSRIQSFMSLSASLSFNHTLREGTGVADILAKHGAMDSTSLV 61
Query: 557 VHQSPPADLL 566
+ SPP ++L
Sbjct: 60 TYPSPPLEML 31
>CO981985
Length = 903
Score = 33.9 bits (76), Expect(2) = 1e-05
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 471 LTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIA-NDTPRYHIYAALIQNIKDLLNDRNIS 529
+T+ +GL L I C SDSLLA+ L+ +H +A+ + + ++
Sbjct: 387 ITSCVRGLTLAWSAVYKNIECDSDSLLALQLLV*EGVTIHHQHASKHKQT*AV----TVN 220
Query: 530 LHHTLREGNQCADFFAKFGANS 551
+ H R+ NQCAD +K G S
Sbjct: 219 VPHVYRKANQCAD*LSKKGEYS 154
Score = 33.5 bits (75), Expect(2) = 1e-05
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = -2
Query: 426 LNVDGSCIGTPPRTGYGGVLRNS 448
LNVDGS +G P G+GG+LR+S
Sbjct: 467 LNVDGSSLGNPS*GGFGGILRDS 399
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,035,042
Number of Sequences: 63676
Number of extensions: 596172
Number of successful extensions: 3341
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 3278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3309
length of query: 581
length of database: 12,639,632
effective HSP length: 102
effective length of query: 479
effective length of database: 6,144,680
effective search space: 2943301720
effective search space used: 2943301720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC135319.4