TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.3 + phase: 0 
         (41 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216588 similar to UP|RNP_HYLLE (Q8SQ11) Ribonuclease pancreati...    50  2e-07
TC216589 weakly similar to GB|AAP21222.1|30102608|BT006414 At3g0...    45  1e-05
TC224260                                                               33  0.033
TC228217 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {A...    25  6.9
TC230172 weakly similar to GB|AAP21222.1|30102608|BT006414 At3g0...    25  9.0
TC215241 homologue to UP|Q6WV72 (Q6WV72) Histone H4, complete          25  9.0

>TC216588 similar to UP|RNP_HYLLE (Q8SQ11) Ribonuclease pancreatic precursor 
           (RNase 1) (RNase A) , partial (10%)
          Length = 771

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 30/43 (69%), Positives = 34/43 (78%), Gaps = 5/43 (11%)
 Frame = +2

Query: 1   MVLVLTTNTTTGTFSAATTSLHAN-----FVLMVLLLVVIINY 38
           MVLVLTTNTTTG+FSAA TS+ AN     F+L VLLL V+INY
Sbjct: 527 MVLVLTTNTTTGSFSAAATSVRANAASVEFLLFVLLL-VLINY 652


>TC216589 weakly similar to GB|AAP21222.1|30102608|BT006414 At3g06035
           {Arabidopsis thaliana;} , partial (18%)
          Length = 788

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 27/43 (62%), Positives = 32/43 (73%), Gaps = 5/43 (11%)
 Frame = +3

Query: 1   MVLVLTTNTTTGTFSAATTSLHA-----NFVLMVLLLVVIINY 38
           MVLVLTTNTTTG+FSAA TS+ A     +F+L V L  V+INY
Sbjct: 483 MVLVLTTNTTTGSFSAAATSVRAYAASVDFLLFVSLF-VLINY 608


>TC224260 
          Length = 506

 Score = 33.1 bits (74), Expect = 0.033
 Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
 Frame = +3

Query: 1   MVLVLTTNTTTGTFSAATT----SLHANFVLMVLLLVVIINYFS 40
           MVL+++TNT++G FS+AT+    +L  +++++   L  +I +F+
Sbjct: 180 MVLIISTNTSSGDFSSATSLLAGALKGHYLMLPFFLSTLIVFFN 311


>TC228217 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {Arabidopsis
           thaliana;} , partial (74%)
          Length = 912

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 15/29 (51%), Positives = 18/29 (61%), Gaps = 3/29 (10%)
 Frame = +1

Query: 1   MVLVLTTNTTTGTFSAAT---TSLHANFV 26
           +V+VLTTNT  G+F   T   T   ANFV
Sbjct: 589 IVVVLTTNTPEGSFVPETETKTDSGANFV 675


>TC230172 weakly similar to GB|AAP21222.1|30102608|BT006414 At3g06035
           {Arabidopsis thaliana;} , partial (71%)
          Length = 910

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 10/15 (66%), Positives = 14/15 (92%)
 Frame = +2

Query: 1   MVLVLTTNTTTGTFS 15
           +V+VLTTNT +GTF+
Sbjct: 530 IVVVLTTNTPSGTFA 574


>TC215241 homologue to UP|Q6WV72 (Q6WV72) Histone H4, complete
          Length = 707

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 6   TTNTTTGTFSAATTSLHANFVLM 28
           TTNTT       TT +HA+FV +
Sbjct: 570 TTNTTIKKNKKKTTPIHASFVFL 502


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.329    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,442,249
Number of Sequences: 63676
Number of extensions: 9486
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of query: 41
length of database: 12,639,632
effective HSP length: 17
effective length of query: 24
effective length of database: 11,557,140
effective search space: 277371360
effective search space used: 277371360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)