BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135311.3 - phase: 1 /pseudo
(84 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225394 UP|SUSY_SOYBN (P13708) Sucrose synthase (Sucrose-UDP g... 121 5e-29
TC214903 similar to UP|Q9T0M9 (Q9T0M9) Sucrose synthase , parti... 114 1e-26
TC233379 similar to UP|SUSY_SOYBN (P13708) Sucrose synthase (Su... 65 8e-12
TC222890 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2 (Su... 44 1e-05
TC225848 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2 (... 36 0.004
TC221845 28 1.1
BM528794 26 4.0
TC230010 weakly similar to UP|Q6ND75 (Q6ND75) Methyl-accepting c... 26 4.0
TC211282 UP|C7D9_SOYBN (O81971) Cytochrome P450 71D9 (P450 CP3)... 25 5.3
TC208587 similar to UP|EXG2_YEAST (P52911) Glucan 1,3-beta-gluco... 25 9.0
BU090284 25 9.0
TC221205 weakly similar to UP|Q9M208 (Q9M208) Enoyl-CoA-hydratas... 25 9.0
>TC225394 UP|SUSY_SOYBN (P13708) Sucrose synthase (Sucrose-UDP
glucosyltransferase) (Nodulin-100) , complete
Length = 3328
Score = 121 bits (304), Expect = 5e-29
Identities = 62/80 (77%), Positives = 67/80 (83%), Gaps = 5/80 (6%)
Frame = +1
Query: 1 IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLELDF 60
IVLPPWVALAVR PG+ EYLRVNVHALVVE LQPAE+L FKEELVDGS+N N+VLELDF
Sbjct: 298 IVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEYLHFKEELVDGSSNGNFVLELDF 477
Query: 61 EPFTASFPRP-----IGGGV 75
EPF A+FPRP IG GV
Sbjct: 478 EPFNAAFPRPTLNKSIGNGV 537
>TC214903 similar to UP|Q9T0M9 (Q9T0M9) Sucrose synthase , partial (78%)
Length = 2572
Score = 114 bits (284), Expect = 1e-26
Identities = 58/80 (72%), Positives = 67/80 (83%), Gaps = 5/80 (6%)
Frame = +1
Query: 1 IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLELDF 60
IVLPP+VALAVR PG+ EYLRVNVH LVV+ L+PAE+L+FKEELV+GS+N N+VLELDF
Sbjct: 922 IVLPPFVALAVRPRPGVWEYLRVNVHMLVVDELRPAEYLRFKEELVEGSSNGNFVLELDF 1101
Query: 61 EPFTASFPRP-----IGGGV 75
EPF ASFPRP IG GV
Sbjct: 1102 EPFNASFPRPTLNKSIGNGV 1161
>TC233379 similar to UP|SUSY_SOYBN (P13708) Sucrose synthase (Sucrose-UDP
glucosyltransferase) (Nodulin-100) , partial (17%)
Length = 682
Score = 64.7 bits (156), Expect = 8e-12
Identities = 34/57 (59%), Positives = 39/57 (67%)
Frame = +2
Query: 1 IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLE 57
I LPPWVALAV +PG+ EYL V HALVV QPA +L K +LVDG + N VLE
Sbjct: 512 ICLPPWVALAVLPIPGVCEYLAVYAHALVVSESQPAAYLHSKVDLVDGIPHGNVVLE 682
>TC222890 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2 (Sucrose-UDP
glucosyltransferase 2) , partial (14%)
Length = 425
Score = 44.3 bits (103), Expect = 1e-05
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2
Query: 1 IVLPPWVALAVRLMPGI*EYLRVNVHALVVENL 33
IVLPP+VA+AVR PG+ EY+RVNV L VE L
Sbjct: 320 IVLPPFVAIAVRPRPGVWEYVRVNVSELSVEQL 418
>TC225848 homologue to UP|SUS2_PEA (O24301) Sucrose synthase 2
(Sucrose-UDP glucosyltransferase 2) , partial (83%)
Length = 2487
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/26 (69%), Positives = 19/26 (72%), Gaps = 5/26 (19%)
Frame = +2
Query: 55 VLELDFEPFTASFPRP-----IGGGV 75
VLELDFEPF A+FPRP IG GV
Sbjct: 14 VLELDFEPFNATFPRPTRSASIGNGV 91
>TC221845
Length = 976
Score = 27.7 bits (60), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +3
Query: 33 LQPAEFLKFKEELVDGSANVNYVLELDFEPFT 64
L+ A + F +L++ S NVNY +DFEP T
Sbjct: 51 LEYASAVDFDNKLLNDSDNVNYDDYMDFEPNT 146
>BM528794
Length = 432
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = +2
Query: 68 PRPIGGGVVVDEEKKG 83
P PIGGG VV EK+G
Sbjct: 266 PTPIGGGRVVAAEKRG 313
>TC230010 weakly similar to UP|Q6ND75 (Q6ND75) Methyl-accepting chemotaxis
receptor/sensory transducer precursor, partial (4%)
Length = 803
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 31 ENLQPAEFLKFKEELVDGSANVNYVLELDFEPFTASFPRP 70
E + + LK ++G ANV+ + FE F S P P
Sbjct: 477 ERNRSSSMLKHCLRFLEGEANVSSKIFFSFEQFQQSIPSP 596
>TC211282 UP|C7D9_SOYBN (O81971) Cytochrome P450 71D9 (P450 CP3) , complete
Length = 1573
Score = 25.4 bits (54), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 48 GSANVNYVLELDFEPFTASFPRPIG 72
G N+N L DF+ F S P P+G
Sbjct: 1107 GGCNLNVSLTTDFKYFRFSVPLPLG 1033
>TC208587 similar to UP|EXG2_YEAST (P52911) Glucan 1,3-beta-glucosidase 2
precursor (Exo-1,3-beta-glucanase 2) , partial (4%)
Length = 1027
Score = 24.6 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 49 SANVNYVLELDFEPFTASFPRPIGGG 74
S + +LEL F PF P+ GGG
Sbjct: 847 SIKIMIILELSFRPFLHFTPQRKGGG 924
>BU090284
Length = 309
Score = 24.6 bits (52), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = +1
Query: 44 ELVDGSANVNYVLELDFEPFTASFPRPI 71
E+ DGS+NV+ V +L ++ + P P+
Sbjct: 52 EITDGSSNVHEVWKLAYK*YRYFLPSPV 135
>TC221205 weakly similar to UP|Q9M208 (Q9M208) Enoyl-CoA-hydratase-like
protein, partial (25%)
Length = 986
Score = 24.6 bits (52), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 43 EELVD--GSANVNYVLELDFEPFTASFPRPIGGG 74
EE+VD G AN + + PF+ SFPR + G
Sbjct: 15 EEIVDAMGEANFFFSSQGSTLPFSGSFPRFVSKG 116
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.148 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,995,813
Number of Sequences: 63676
Number of extensions: 25376
Number of successful extensions: 137
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of query: 84
length of database: 12,639,632
effective HSP length: 60
effective length of query: 24
effective length of database: 8,819,072
effective search space: 211657728
effective search space used: 211657728
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC135311.3